data_4CD1
#
_model_server_result.job_id            Y33rakQycPMu5yWagRgcew 
_model_server_result.datetime_utc      '2024-11-26 21:04:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cd1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1452}' 
#
_entry.id    4CD1 
#
_exptl.entry_id    4CD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              408.427 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-AMINO-4-(3-METHYLPHENYL)AMINO-9,10-DIOXO-9,10-DIHYDROANTHRACENE-2-SULFONATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CD1 
_cell.length_a            41.007 
_cell.length_b            68.04 
_cell.length_c            162.389 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 70 A CYS 75 1_555 A SG CYS 94 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 237 A CYS 242 1_555 A SG CYS 279 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 A SG CYS 260 A CYS 265 1_555 A SG CYS 305 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf4 A SG CYS 318 A CYS 323 1_555 A SG CYS 323 A CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf5 A SG CYS 372 A CYS 377 1_555 A SG CYS 394 A CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
#
_chem_comp.formula           'C21 H16 N2 O5 S' 
_chem_comp.formula_weight    408.427 
_chem_comp.id                8E9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-AMINO-4-(3-METHYLPHENYL)AMINO-9,10-DIOXO-9,10-DIHYDROANTHRACENE-2-SULFONATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O16 C10 8E9 doub 1 n n 
C10 C14 8E9 sing 2 n n 
C10 C11 8E9 sing 3 n n 
C14 C5 8E9 sing 4 n y 
C14 C13 8E9 doub 5 n y 
C5 C6 8E9 doub 6 n y 
C6 C7 8E9 sing 7 n y 
C7 C8 8E9 doub 8 n y 
C8 C13 8E9 sing 9 n y 
C13 C9 8E9 sing 10 n n 
C9 O9 8E9 doub 11 n n 
C9 C12 8E9 sing 12 n n 
C11 C12 8E9 sing 13 n y 
C11 C4 8E9 doub 14 n y 
C12 C1 8E9 doub 15 n y 
C1 N1 8E9 sing 16 n n 
C1 C2 8E9 sing 17 n y 
C4 C3 8E9 sing 18 n y 
C4 N4 8E9 sing 19 n n 
C3 C2 8E9 doub 20 n y 
C2 S2 8E9 sing 21 n n 
S2 OS2 8E9 doub 22 n n 
S2 OS1 8E9 sing 23 n n 
S2 OS3 8E9 doub 24 n n 
N4 C1' 8E9 sing 25 n n 
C1' C6' 8E9 sing 26 n y 
C1' C2' 8E9 doub 27 n y 
C6' C5' 8E9 doub 28 n y 
C5' C4' 8E9 sing 29 n y 
C4' C3' 8E9 doub 30 n y 
C3' C7' 8E9 sing 31 n n 
C3' C2' 8E9 sing 32 n y 
C5 H5 8E9 sing 33 n n 
C6 H6 8E9 sing 34 n n 
C7 H7 8E9 sing 35 n n 
C8 H8 8E9 sing 36 n n 
N1 H11N 8E9 sing 37 n n 
N1 H12N 8E9 sing 38 n n 
C3 H3 8E9 sing 39 n n 
N4 H4 8E9 sing 40 n n 
OS1 HS1 8E9 sing 41 n n 
C6' H6' 8E9 sing 42 n n 
C2' H2' 8E9 sing 43 n n 
C5' H5' 8E9 sing 44 n n 
C4' H4' 8E9 sing 45 n n 
C7' "H7'1" 8E9 sing 46 n n 
C7' "H7'2" 8E9 sing 47 n n 
C7' "H7'3" 8E9 sing 48 n n 
#
_atom_sites.entry_id                     4CD1 
_atom_sites.fract_transf_matrix[1][1]    0.024386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006158 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 8E9 A 1 1452 1452 8E9 8E9 . 
C 2 8E9 A 1 1453 1453 8E9 8E9 . 
D 3 HOH A 1 2001 2001 HOH HOH . 
D 3 HOH A 2 2002 2002 HOH HOH . 
D 3 HOH A 3 2003 2003 HOH HOH . 
D 3 HOH A 4 2004 2004 HOH HOH . 
D 3 HOH A 5 2005 2005 HOH HOH . 
D 3 HOH A 6 2006 2006 HOH HOH . 
D 3 HOH A 7 2007 2007 HOH HOH . 
D 3 HOH A 8 2008 2008 HOH HOH . 
D 3 HOH A 9 2009 2009 HOH HOH . 
D 3 HOH A 10 2010 2010 HOH HOH . 
D 3 HOH A 11 2011 2011 HOH HOH . 
D 3 HOH A 12 2012 2012 HOH HOH . 
D 3 HOH A 13 2013 2013 HOH HOH . 
D 3 HOH A 14 2014 2014 HOH HOH . 
D 3 HOH A 15 2015 2015 HOH HOH . 
D 3 HOH A 16 2016 2016 HOH HOH . 
D 3 HOH A 17 2017 2017 HOH HOH . 
D 3 HOH A 18 2018 2018 HOH HOH . 
D 3 HOH A 19 2019 2019 HOH HOH . 
D 3 HOH A 20 2020 2020 HOH HOH . 
D 3 HOH A 21 2021 2021 HOH HOH . 
D 3 HOH A 22 2022 2022 HOH HOH . 
D 3 HOH A 23 2023 2023 HOH HOH . 
D 3 HOH A 24 2024 2024 HOH HOH . 
D 3 HOH A 25 2025 2025 HOH HOH . 
D 3 HOH A 26 2026 2026 HOH HOH . 
D 3 HOH A 27 2027 2027 HOH HOH . 
D 3 HOH A 28 2028 2028 HOH HOH . 
D 3 HOH A 29 2029 2029 HOH HOH . 
D 3 HOH A 30 2030 2030 HOH HOH . 
D 3 HOH A 31 2031 2031 HOH HOH . 
D 3 HOH A 32 2032 2032 HOH HOH . 
D 3 HOH A 33 2033 2033 HOH HOH . 
D 3 HOH A 34 2034 2034 HOH HOH . 
D 3 HOH A 35 2035 2035 HOH HOH . 
D 3 HOH A 36 2036 2036 HOH HOH . 
D 3 HOH A 37 2037 2037 HOH HOH . 
D 3 HOH A 38 2038 2038 HOH HOH . 
D 3 HOH A 39 2039 2039 HOH HOH . 
D 3 HOH A 40 2040 2040 HOH HOH . 
D 3 HOH A 41 2041 2041 HOH HOH . 
D 3 HOH A 42 2042 2042 HOH HOH . 
D 3 HOH A 43 2043 2043 HOH HOH . 
D 3 HOH A 44 2044 2044 HOH HOH . 
D 3 HOH A 45 2045 2045 HOH HOH . 
D 3 HOH A 46 2046 2046 HOH HOH . 
D 3 HOH A 47 2047 2047 HOH HOH . 
D 3 HOH A 48 2048 2048 HOH HOH . 
D 3 HOH A 49 2049 2049 HOH HOH . 
D 3 HOH A 50 2050 2050 HOH HOH . 
D 3 HOH A 51 2051 2051 HOH HOH . 
D 3 HOH A 52 2052 2052 HOH HOH . 
D 3 HOH A 53 2053 2053 HOH HOH . 
D 3 HOH A 54 2054 2054 HOH HOH . 
D 3 HOH A 55 2055 2055 HOH HOH . 
D 3 HOH A 56 2056 2056 HOH HOH . 
D 3 HOH A 57 2057 2057 HOH HOH . 
D 3 HOH A 58 2058 2058 HOH HOH . 
D 3 HOH A 59 2059 2059 HOH HOH . 
D 3 HOH A 60 2060 2060 HOH HOH . 
D 3 HOH A 61 2061 2061 HOH HOH . 
D 3 HOH A 62 2062 2062 HOH HOH . 
D 3 HOH A 63 2063 2063 HOH HOH . 
D 3 HOH A 64 2064 2064 HOH HOH . 
D 3 HOH A 65 2065 2065 HOH HOH . 
D 3 HOH A 66 2066 2066 HOH HOH . 
D 3 HOH A 67 2067 2067 HOH HOH . 
D 3 HOH A 68 2068 2068 HOH HOH . 
D 3 HOH A 69 2069 2069 HOH HOH . 
D 3 HOH A 70 2070 2070 HOH HOH . 
D 3 HOH A 71 2071 2071 HOH HOH . 
D 3 HOH A 72 2072 2072 HOH HOH . 
D 3 HOH A 73 2073 2073 HOH HOH . 
D 3 HOH A 74 2074 2074 HOH HOH . 
D 3 HOH A 75 2075 2075 HOH HOH . 
D 3 HOH A 76 2076 2076 HOH HOH . 
D 3 HOH A 77 2077 2077 HOH HOH . 
D 3 HOH A 78 2078 2078 HOH HOH . 
D 3 HOH A 79 2079 2079 HOH HOH . 
D 3 HOH A 80 2080 2080 HOH HOH . 
D 3 HOH A 81 2081 2081 HOH HOH . 
D 3 HOH A 82 2082 2082 HOH HOH . 
D 3 HOH A 83 2083 2083 HOH HOH . 
D 3 HOH A 84 2084 2084 HOH HOH . 
D 3 HOH A 85 2085 2085 HOH HOH . 
D 3 HOH A 86 2086 2086 HOH HOH . 
D 3 HOH A 87 2087 2087 HOH HOH . 
D 3 HOH A 88 2088 2088 HOH HOH . 
D 3 HOH A 89 2089 2089 HOH HOH . 
D 3 HOH A 90 2090 2090 HOH HOH . 
D 3 HOH A 91 2091 2091 HOH HOH . 
D 3 HOH A 92 2092 2092 HOH HOH . 
D 3 HOH A 93 2093 2093 HOH HOH . 
D 3 HOH A 94 2094 2094 HOH HOH . 
D 3 HOH A 95 2095 2095 HOH HOH . 
D 3 HOH A 96 2096 2096 HOH HOH . 
D 3 HOH A 97 2097 2097 HOH HOH . 
D 3 HOH A 98 2098 2098 HOH HOH . 
D 3 HOH A 99 2099 2099 HOH HOH . 
D 3 HOH A 100 2100 2100 HOH HOH . 
D 3 HOH A 101 2101 2101 HOH HOH . 
D 3 HOH A 102 2102 2102 HOH HOH . 
D 3 HOH A 103 2103 2103 HOH HOH . 
D 3 HOH A 104 2104 2104 HOH HOH . 
D 3 HOH A 105 2105 2105 HOH HOH . 
D 3 HOH A 106 2106 2106 HOH HOH . 
D 3 HOH A 107 2107 2107 HOH HOH . 
D 3 HOH A 108 2108 2108 HOH HOH . 
D 3 HOH A 109 2109 2109 HOH HOH . 
D 3 HOH A 110 2110 2110 HOH HOH . 
D 3 HOH A 111 2111 2111 HOH HOH . 
D 3 HOH A 112 2112 2112 HOH HOH . 
D 3 HOH A 113 2113 2113 HOH HOH . 
D 3 HOH A 114 2114 2114 HOH HOH . 
D 3 HOH A 115 2115 2115 HOH HOH . 
D 3 HOH A 116 2116 2116 HOH HOH . 
D 3 HOH A 117 2117 2117 HOH HOH . 
D 3 HOH A 118 2118 2118 HOH HOH . 
D 3 HOH A 119 2119 2119 HOH HOH . 
D 3 HOH A 120 2120 2120 HOH HOH . 
D 3 HOH A 121 2121 2121 HOH HOH . 
D 3 HOH A 122 2122 2122 HOH HOH . 
D 3 HOH A 123 2123 2123 HOH HOH . 
D 3 HOH A 124 2124 2124 HOH HOH . 
D 3 HOH A 125 2125 2125 HOH HOH . 
D 3 HOH A 126 2126 2126 HOH HOH . 
D 3 HOH A 127 2127 2127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O16 8E9 . . . B 2 28.112 34.555 26.036 1 45.62 ? O16 8E9 1452 A 1 
HETATM 2 C C10 8E9 . . . B 2 29.15 35.086 25.637 1 43.83 ? C10 8E9 1452 A 1 
HETATM 3 C C14 8E9 . . . B 2 29.164 35.864 24.342 1 46.91 ? C14 8E9 1452 A 1 
HETATM 4 C C5 8E9 . . . B 2 28.01 35.983 23.544 1 48.53 ? C5 8E9 1452 A 1 
HETATM 5 C C6 8E9 . . . B 2 28.097 36.694 22.338 1 51.38 ? C6 8E9 1452 A 1 
HETATM 6 C C7 8E9 . . . B 2 29.301 37.278 21.89 1 51.36 ? C7 8E9 1452 A 1 
HETATM 7 C C8 8E9 . . . B 2 30.462 37.183 22.653 1 54.96 ? C8 8E9 1452 A 1 
HETATM 8 C C13 8E9 . . . B 2 30.434 36.481 23.879 1 49.32 ? C13 8E9 1452 A 1 
HETATM 9 C C9 8E9 . . . B 2 31.658 36.335 24.716 1 46.3 ? C9 8E9 1452 A 1 
HETATM 10 O O9 8E9 . . . B 2 32.726 36.854 24.363 1 47.63 ? O9 8E9 1452 A 1 
HETATM 11 C C11 8E9 . . . B 2 30.371 34.955 26.485 1 42.23 ? C11 8E9 1452 A 1 
HETATM 12 C C12 8E9 . . . B 2 31.622 35.59 26.006 1 39.21 ? C12 8E9 1452 A 1 
HETATM 13 C C1 8E9 . . . B 2 32.819 35.458 26.86 1 40.47 ? C1 8E9 1452 A 1 
HETATM 14 N N1 8E9 . . . B 2 34.007 35.96 26.481 1 38.65 ? N1 8E9 1452 A 1 
HETATM 15 C C4 8E9 . . . B 2 30.347 34.195 27.791 1 34.25 ? C4 8E9 1452 A 1 
HETATM 16 C C3 8E9 . . . B 2 31.521 34.109 28.54 1 33.42 ? C3 8E9 1452 A 1 
HETATM 17 C C2 8E9 . . . B 2 32.757 34.671 28.14 1 40.14 ? C2 8E9 1452 A 1 
HETATM 18 S S2 8E9 . . . B 2 34.108 34.566 29.068 1 39.69 ? S2 8E9 1452 A 1 
HETATM 19 O OS2 8E9 . . . B 2 35.187 33.823 28.405 1 40.37 ? OS2 8E9 1452 A 1 
HETATM 20 O OS1 8E9 . . . B 2 33.696 33.871 30.36 1 39.73 ? OS1 8E9 1452 A 1 
HETATM 21 O OS3 8E9 . . . B 2 34.582 35.909 29.411 1 47.89 ? OS3 8E9 1452 A 1 
HETATM 22 N N4 8E9 . . . B 2 29.143 33.647 28.127 1 34.93 ? N4 8E9 1452 A 1 
HETATM 23 C C1' 8E9 . . . B 2 28.935 32.845 29.215 1 34.29 ? C1' 8E9 1452 A 1 
HETATM 24 C C6' 8E9 . . . B 2 27.736 33.025 29.924 1 32.6 ? C6' 8E9 1452 A 1 
HETATM 25 C C5' 8E9 . . . B 2 27.377 32.256 31.058 1 33.23 ? C5' 8E9 1452 A 1 
HETATM 26 C C4' 8E9 . . . B 2 28.308 31.316 31.455 1 29.07 ? C4' 8E9 1452 A 1 
HETATM 27 C C3' 8E9 . . . B 2 29.488 31.131 30.777 1 34.35 ? C3' 8E9 1452 A 1 
HETATM 28 C C7' 8E9 . . . B 2 30.426 30.101 31.273 1 32.93 ? C7' 8E9 1452 A 1 
HETATM 29 C C2' 8E9 . . . B 2 29.843 31.858 29.618 1 34.22 ? C2' 8E9 1452 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#