data_4CDE # _model_server_result.job_id rxsi1aQDdJHTlbNx17-yrg _model_server_result.datetime_utc '2024-10-19 16:23:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1119}' # _entry.id 4CDE # _exptl.entry_id 4CDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CDE _cell.length_a 84.35 _cell.length_b 84.35 _cell.length_c 224.94 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression D,E,F,K,L,M,N,R,S,T 1 1 A,B,C,G,H,I,J,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 26 B CYS 231 1_555 B SG CYS 69 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 62 B CYS 267 1_555 B SG CYS 102 B CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 92 B CYS 297 1_555 B SG CYS 108 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 D SG CYS 6 D CYS 6 1_555 D SG CYS 94 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 D SG CYS 30 D CYS 30 1_555 D SG CYS 112 D CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 E SG CYS 26 E CYS 231 1_555 E SG CYS 69 E CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 E SG CYS 62 E CYS 267 1_555 E SG CYS 102 E CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 E SG CYS 92 E CYS 297 1_555 E SG CYS 108 E CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A ND2 ASN 5 A ASN 5 1_555 G C1 NAG . A NAG 1119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B SG CYS 29 B CYS 234 1_555 I C9 U6B . B U6B 1368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? covale ? covale3 B ND2 ASN 47 B ASN 252 1_555 H C1 NAG . B NAG 1367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 D ND2 ASN 5 D ASN 5 1_555 K C1 NAG . D NAG 1119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 E SG CYS 29 E CYS 234 1_555 N C9 U6B . F U6B 1440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? covale ? covale6 E ND2 ASN 47 E ASN 252 1_555 L C1 NAG . E NAG 1368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4CDE _atom_sites.fract_transf_matrix[1][1] 0.011855 _atom_sites.fract_transf_matrix[1][2] 0.006845 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 1119 1119 NAG NAG . H 4 NAG B 1 1367 1367 NAG NAG . I 5 U6B B 1 1368 1368 U6B U6B . J 6 CL B 1 1369 1369 CL CL . K 4 NAG D 1 1119 1119 NAG NAG . L 4 NAG E 1 1368 1368 NAG NAG . M 6 CL E 1 1369 1369 CL CL . N 5 U6B F 1 1440 1440 U6B U6B . O 7 HOH A 1 2001 2001 HOH HOH . O 7 HOH A 2 2002 2002 HOH HOH . O 7 HOH A 3 2003 2003 HOH HOH . O 7 HOH A 4 2004 2004 HOH HOH . O 7 HOH A 5 2005 2005 HOH HOH . O 7 HOH A 6 2006 2006 HOH HOH . O 7 HOH A 7 2007 2007 HOH HOH . O 7 HOH A 8 2008 2008 HOH HOH . O 7 HOH A 9 2009 2009 HOH HOH . O 7 HOH A 10 2010 2010 HOH HOH . O 7 HOH A 11 2011 2011 HOH HOH . O 7 HOH A 12 2012 2012 HOH HOH . O 7 HOH A 13 2013 2013 HOH HOH . O 7 HOH A 14 2014 2014 HOH HOH . O 7 HOH A 15 2015 2015 HOH HOH . O 7 HOH A 16 2016 2016 HOH HOH . O 7 HOH A 17 2017 2017 HOH HOH . O 7 HOH A 18 2018 2018 HOH HOH . O 7 HOH A 19 2019 2019 HOH HOH . O 7 HOH A 20 2020 2020 HOH HOH . O 7 HOH A 21 2021 2021 HOH HOH . O 7 HOH A 22 2022 2022 HOH HOH . O 7 HOH A 23 2023 2023 HOH HOH . O 7 HOH A 24 2024 2024 HOH HOH . O 7 HOH A 25 2025 2025 HOH HOH . O 7 HOH A 26 2026 2026 HOH HOH . O 7 HOH A 27 2027 2027 HOH HOH . O 7 HOH A 28 2028 2028 HOH HOH . O 7 HOH A 29 2029 2029 HOH HOH . O 7 HOH A 30 2030 2030 HOH HOH . O 7 HOH A 31 2031 2031 HOH HOH . O 7 HOH A 32 2032 2032 HOH HOH . O 7 HOH A 33 2033 2033 HOH HOH . O 7 HOH A 34 2034 2034 HOH HOH . O 7 HOH A 35 2035 2035 HOH HOH . O 7 HOH A 36 2036 2036 HOH HOH . P 7 HOH B 1 2001 2001 HOH HOH . P 7 HOH B 2 2002 2002 HOH HOH . P 7 HOH B 3 2003 2003 HOH HOH . P 7 HOH B 4 2004 2004 HOH HOH . P 7 HOH B 5 2005 2005 HOH HOH . P 7 HOH B 6 2006 2006 HOH HOH . P 7 HOH B 7 2007 2007 HOH HOH . P 7 HOH B 8 2008 2008 HOH HOH . P 7 HOH B 9 2009 2009 HOH HOH . P 7 HOH B 10 2010 2010 HOH HOH . P 7 HOH B 11 2011 2011 HOH HOH . P 7 HOH B 12 2012 2012 HOH HOH . P 7 HOH B 13 2013 2013 HOH HOH . P 7 HOH B 14 2014 2014 HOH HOH . P 7 HOH B 15 2015 2015 HOH HOH . P 7 HOH B 16 2016 2016 HOH HOH . P 7 HOH B 17 2017 2017 HOH HOH . P 7 HOH B 18 2018 2018 HOH HOH . P 7 HOH B 19 2019 2019 HOH HOH . P 7 HOH B 20 2020 2020 HOH HOH . P 7 HOH B 21 2021 2021 HOH HOH . P 7 HOH B 22 2022 2022 HOH HOH . P 7 HOH B 23 2023 2023 HOH HOH . P 7 HOH B 24 2024 2024 HOH HOH . P 7 HOH B 25 2025 2025 HOH HOH . P 7 HOH B 26 2026 2026 HOH HOH . P 7 HOH B 27 2027 2027 HOH HOH . P 7 HOH B 28 2028 2028 HOH HOH . P 7 HOH B 29 2029 2029 HOH HOH . P 7 HOH B 30 2030 2030 HOH HOH . P 7 HOH B 31 2031 2031 HOH HOH . P 7 HOH B 32 2032 2032 HOH HOH . P 7 HOH B 33 2033 2033 HOH HOH . P 7 HOH B 34 2034 2034 HOH HOH . P 7 HOH B 35 2035 2035 HOH HOH . P 7 HOH B 36 2036 2036 HOH HOH . P 7 HOH B 37 2037 2037 HOH HOH . P 7 HOH B 38 2038 2038 HOH HOH . Q 7 HOH C 1 2001 2001 HOH HOH . Q 7 HOH C 2 2002 2002 HOH HOH . Q 7 HOH C 3 2003 2003 HOH HOH . Q 7 HOH C 4 2004 2004 HOH HOH . Q 7 HOH C 5 2005 2005 HOH HOH . Q 7 HOH C 6 2006 2006 HOH HOH . Q 7 HOH C 7 2007 2007 HOH HOH . Q 7 HOH C 8 2008 2008 HOH HOH . Q 7 HOH C 9 2009 2009 HOH HOH . Q 7 HOH C 10 2010 2010 HOH HOH . Q 7 HOH C 11 2011 2011 HOH HOH . Q 7 HOH C 12 2012 2012 HOH HOH . Q 7 HOH C 13 2013 2013 HOH HOH . Q 7 HOH C 14 2014 2014 HOH HOH . R 7 HOH D 1 2001 2001 HOH HOH . R 7 HOH D 2 2002 2002 HOH HOH . R 7 HOH D 3 2003 2003 HOH HOH . R 7 HOH D 4 2004 2004 HOH HOH . R 7 HOH D 5 2005 2005 HOH HOH . R 7 HOH D 6 2006 2006 HOH HOH . R 7 HOH D 7 2007 2007 HOH HOH . R 7 HOH D 8 2008 2008 HOH HOH . R 7 HOH D 9 2009 2009 HOH HOH . R 7 HOH D 10 2010 2010 HOH HOH . R 7 HOH D 11 2011 2011 HOH HOH . R 7 HOH D 12 2012 2012 HOH HOH . R 7 HOH D 13 2013 2013 HOH HOH . R 7 HOH D 14 2014 2014 HOH HOH . R 7 HOH D 15 2015 2015 HOH HOH . R 7 HOH D 16 2016 2016 HOH HOH . R 7 HOH D 17 2017 2017 HOH HOH . R 7 HOH D 18 2018 2018 HOH HOH . R 7 HOH D 19 2019 2019 HOH HOH . R 7 HOH D 20 2020 2020 HOH HOH . R 7 HOH D 21 2021 2021 HOH HOH . R 7 HOH D 22 2022 2022 HOH HOH . R 7 HOH D 23 2023 2023 HOH HOH . R 7 HOH D 24 2024 2024 HOH HOH . R 7 HOH D 25 2025 2025 HOH HOH . S 7 HOH E 1 2001 2001 HOH HOH . S 7 HOH E 2 2002 2002 HOH HOH . S 7 HOH E 3 2003 2003 HOH HOH . S 7 HOH E 4 2004 2004 HOH HOH . S 7 HOH E 5 2005 2005 HOH HOH . S 7 HOH E 6 2006 2006 HOH HOH . S 7 HOH E 7 2007 2007 HOH HOH . S 7 HOH E 8 2008 2008 HOH HOH . S 7 HOH E 9 2009 2009 HOH HOH . S 7 HOH E 10 2010 2010 HOH HOH . S 7 HOH E 11 2011 2011 HOH HOH . S 7 HOH E 12 2012 2012 HOH HOH . S 7 HOH E 13 2013 2013 HOH HOH . S 7 HOH E 14 2014 2014 HOH HOH . S 7 HOH E 15 2015 2015 HOH HOH . S 7 HOH E 16 2016 2016 HOH HOH . S 7 HOH E 17 2017 2017 HOH HOH . S 7 HOH E 18 2018 2018 HOH HOH . S 7 HOH E 19 2019 2019 HOH HOH . S 7 HOH E 20 2020 2020 HOH HOH . S 7 HOH E 21 2021 2021 HOH HOH . S 7 HOH E 22 2022 2022 HOH HOH . S 7 HOH E 23 2023 2023 HOH HOH . T 7 HOH F 1 2001 2001 HOH HOH . T 7 HOH F 2 2002 2002 HOH HOH . T 7 HOH F 3 2003 2003 HOH HOH . T 7 HOH F 4 2004 2004 HOH HOH . T 7 HOH F 5 2005 2005 HOH HOH . T 7 HOH F 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 4 22.61 84.067 40.176 1 89.23 ? C1 NAG 1119 D 1 HETATM 2 C C2 NAG . . . K 4 23.641 85.081 39.644 1 99.51 ? C2 NAG 1119 D 1 HETATM 3 C C3 NAG . . . K 4 23.885 86.2 40.662 1 99.71 ? C3 NAG 1119 D 1 HETATM 4 C C4 NAG . . . K 4 22.554 86.884 40.952 1 98.6 ? C4 NAG 1119 D 1 HETATM 5 C C5 NAG . . . K 4 21.639 85.826 41.563 1 94.44 ? C5 NAG 1119 D 1 HETATM 6 C C6 NAG . . . K 4 20.264 86.382 41.928 1 96.18 ? C6 NAG 1119 D 1 HETATM 7 C C7 NAG . . . K 4 25.019 83.695 38.186 1 106.64 ? C7 NAG 1119 D 1 HETATM 8 C C8 NAG . . . K 4 26.374 83.091 37.908 1 96.27 ? C8 NAG 1119 D 1 HETATM 9 N N2 NAG . . . K 4 24.902 84.445 39.285 1 103.53 ? N2 NAG 1119 D 1 HETATM 10 O O3 NAG . . . K 4 24.832 87.14 40.201 1 100.24 ? O3 NAG 1119 D 1 HETATM 11 O O4 NAG . . . K 4 22.717 88.01 41.795 1 95.89 ? O4 NAG 1119 D 1 HETATM 12 O O5 NAG . . . K 4 21.461 84.785 40.621 1 93.12 ? O5 NAG 1119 D 1 HETATM 13 O O6 NAG . . . K 4 19.25 85.643 41.276 1 97.37 ? O6 NAG 1119 D 1 HETATM 14 O O7 NAG . . . K 4 24.067 83.494 37.422 1 98.86 ? O7 NAG 1119 D 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 158 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 14 #