data_4CDL # _model_server_result.job_id iUSF_NHY8oY0ZlRytxfbuA _model_server_result.datetime_utc '2025-05-17 11:54:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cdl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1128}' # _entry.id 4CDL # _exptl.entry_id 4CDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.27 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-1-(6-methoxynaphthalen-2-yl)but-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CDL _cell.length_a 51.58 _cell.length_b 51.58 _cell.length_c 198.64 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 88 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 88 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C13 _struct_conn.ptnr2_label_comp_id LLK _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LLK _struct_conn.ptnr2_auth_seq_id 1128 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.281 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H14 O2' _chem_comp.formula_weight 226.27 _chem_comp.id LLK _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-1-(6-methoxynaphthalen-2-yl)but-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 LLK doub 194 n y H1 C1 LLK sing 195 n n C1 C2 LLK sing 196 n y O1 C11 LLK doub 197 n n C2 C3 LLK doub 198 n y C2 H2 LLK sing 199 n n C4 C3 LLK sing 200 n y C3 O3 LLK sing 201 n n O3 C31 LLK sing 202 n n C5 C4 LLK doub 203 n y C4 H4 LLK sing 204 n n C10 C5 LLK sing 205 n y C6 C5 LLK sing 206 n y C7 C6 LLK sing 207 n y C8 C7 LLK doub 208 n y H7 C7 LLK sing 209 n n C11 C8 LLK sing 210 n n C8 C9 LLK sing 211 n y H9 C9 LLK sing 212 n n C9 C10 LLK doub 213 n y C10 H10 LLK sing 214 n n C12 C11 LLK sing 215 n n C13 C12 LLK doub 216 e n C12 H12 LLK sing 217 n n C14 C13 LLK sing 218 n n C13 H13 LLK sing 219 n n H14 C14 LLK sing 220 n n H14B C14 LLK sing 221 n n C14 H14A LLK sing 222 n n H31A C31 LLK sing 223 n n H31B C31 LLK sing 224 n n C31 H31 LLK sing 225 n n # _atom_sites.entry_id 4CDL _atom_sites.fract_transf_matrix[1][1] 0.019387 _atom_sites.fract_transf_matrix[1][2] 0.011193 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LLK A 1 1128 1128 LLK LLK . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LLK . . . B 2 -4.183 10.895 2.166 1 60.27 ? C1 LLK 1128 A 1 HETATM 2 O O1 LLK . . . B 2 -4.295 9.806 -2.795 1 90.51 ? O1 LLK 1128 A 1 HETATM 3 C C2 LLK . . . B 2 -3.782 11.252 3.473 1 69.99 ? C2 LLK 1128 A 1 HETATM 4 C C3 LLK . . . B 2 -2.444 11.538 3.749 1 67.29 ? C3 LLK 1128 A 1 HETATM 5 O O3 LLK . . . B 2 -2.081 11.9 5.118 1 68.32 ? O3 LLK 1128 A 1 HETATM 6 C C4 LLK . . . B 2 -1.507 11.472 2.73 1 64.87 ? C4 LLK 1128 A 1 HETATM 7 C C5 LLK . . . B 2 -1.908 11.114 1.419 1 67.73 ? C5 LLK 1128 A 1 HETATM 8 C C6 LLK . . . B 2 -3.239 10.829 1.149 1 69.79 ? C6 LLK 1128 A 1 HETATM 9 C C7 LLK . . . B 2 -3.635 10.475 -0.153 1 67.05 ? C7 LLK 1128 A 1 HETATM 10 C C8 LLK . . . B 2 -2.68 10.407 -1.183 1 81.66 ? C8 LLK 1128 A 1 HETATM 11 C C9 LLK . . . B 2 -1.352 10.695 -0.915 1 77.1 ? C9 LLK 1128 A 1 HETATM 12 C C10 LLK . . . B 2 -0.957 11.048 0.39 1 71.94 ? C10 LLK 1128 A 1 HETATM 13 C C11 LLK . . . B 2 -3.131 10.03 -2.591 1 87.55 ? C11 LLK 1128 A 1 HETATM 14 C C12 LLK . . . B 2 -2.155 9.936 -3.77 1 74.99 ? C12 LLK 1128 A 1 HETATM 15 C C13 LLK . . . B 2 -2.483 9.618 -5.027 1 65.09 ? C13 LLK 1128 A 1 HETATM 16 C C14 LLK . . . B 2 -1.414 9.553 -6.116 1 75.1 ? C14 LLK 1128 A 1 HETATM 17 C C31 LLK . . . B 2 -0.785 12.505 5.223 1 64.95 ? C31 LLK 1128 A 1 HETATM 18 H H1 LLK . . . B 2 -5.114 10.697 1.98 1 72.32 ? H1 LLK 1128 A 1 HETATM 19 H H2 LLK . . . B 2 -4.441 11.296 4.185 1 83.99 ? H2 LLK 1128 A 1 HETATM 20 H H4 LLK . . . B 2 -0.58 11.668 2.913 1 77.85 ? H4 LLK 1128 A 1 HETATM 21 H H7 LLK . . . B 2 -4.569 10.278 -0.342 1 80.46 ? H7 LLK 1128 A 1 HETATM 22 H H9 LLK . . . B 2 -0.687 10.649 -1.634 1 92.52 ? H9 LLK 1128 A 1 HETATM 23 H H10 LLK . . . B 2 -0.038 11.244 0.574 1 86.33 ? H10 LLK 1128 A 1 HETATM 24 H H12 LLK . . . B 2 -1.221 10.119 -3.55 1 89.99 ? H12 LLK 1128 A 1 HETATM 25 H H31 LLK . . . B 2 -0.599 12.725 6.172 1 77.95 ? H31 LLK 1128 A 1 HETATM 26 H H31A LLK . . . B 2 -0.763 13.322 4.689 1 77.95 ? H31A LLK 1128 A 1 HETATM 27 H H31B LLK . . . B 2 -0.109 11.885 4.895 1 77.95 ? H31B LLK 1128 A 1 HETATM 28 H H14 LLK . . . B 2 -1.453 8.813 -6.769 1 90.11 ? H14 LLK 1128 A 1 HETATM 29 H H14A LLK . . . B 2 -0.598 10.08 -5.999 1 90.11 ? H14A LLK 1128 A 1 HETATM 30 H H14B LLK . . . B 2 -1.851 10.21 -6.71 1 90.11 ? H14B LLK 1128 A 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #