data_4CDM
#
_model_server_result.job_id            ymim-gy7sZSXEV38rCCuMA 
_model_server_result.datetime_utc      '2024-11-08 06:50:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cdm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1463}' 
#
_entry.id    4CDM 
#
_exptl.entry_id    4CDM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CDM 
_cell.length_a            69.89 
_cell.length_b            69.89 
_cell.length_c            245.52 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CDM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     4CDM 
_atom_sites.fract_transf_matrix[1][1]    0.014308 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 1463 1463 FAD FAD . 
C 3 FO1 A 1 1464 1464 FO1 FO1 . 
D 4 SO4 A 1 1465 1465 SO4 SO4 . 
E 4 SO4 A 1 1466 1466 SO4 SO4 . 
F 4 SO4 A 1 1467 1467 SO4 SO4 . 
G 4 SO4 A 1 1468 1468 SO4 SO4 . 
H 5 GOL A 1 1469 1469 GOL GOL . 
I 5 GOL A 1 1470 1470 GOL GOL . 
J 6 HOH A 1 2001 2001 HOH HOH . 
J 6 HOH A 2 2002 2002 HOH HOH . 
J 6 HOH A 3 2003 2003 HOH HOH . 
J 6 HOH A 4 2004 2004 HOH HOH . 
J 6 HOH A 5 2005 2005 HOH HOH . 
J 6 HOH A 6 2006 2006 HOH HOH . 
J 6 HOH A 7 2007 2007 HOH HOH . 
J 6 HOH A 8 2008 2008 HOH HOH . 
J 6 HOH A 9 2009 2009 HOH HOH . 
J 6 HOH A 10 2010 2010 HOH HOH . 
J 6 HOH A 11 2011 2011 HOH HOH . 
J 6 HOH A 12 2012 2012 HOH HOH . 
J 6 HOH A 13 2013 2013 HOH HOH . 
J 6 HOH A 14 2014 2014 HOH HOH . 
J 6 HOH A 15 2015 2015 HOH HOH . 
J 6 HOH A 16 2016 2016 HOH HOH . 
J 6 HOH A 17 2017 2017 HOH HOH . 
J 6 HOH A 18 2018 2018 HOH HOH . 
J 6 HOH A 19 2019 2019 HOH HOH . 
J 6 HOH A 20 2020 2020 HOH HOH . 
J 6 HOH A 21 2021 2021 HOH HOH . 
J 6 HOH A 22 2022 2022 HOH HOH . 
J 6 HOH A 23 2023 2023 HOH HOH . 
J 6 HOH A 24 2024 2024 HOH HOH . 
J 6 HOH A 25 2025 2025 HOH HOH . 
J 6 HOH A 26 2026 2026 HOH HOH . 
J 6 HOH A 27 2027 2027 HOH HOH . 
J 6 HOH A 28 2028 2028 HOH HOH . 
J 6 HOH A 29 2029 2029 HOH HOH . 
J 6 HOH A 30 2030 2030 HOH HOH . 
J 6 HOH A 31 2031 2031 HOH HOH . 
J 6 HOH A 32 2032 2032 HOH HOH . 
J 6 HOH A 33 2033 2033 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 24.338 23.515 95.04 1 13.25 ? PA FAD 1463 A 1 
HETATM 2 O O1A FAD . . . B 2 23.679 24.246 93.893 1 12.7 ? O1A FAD 1463 A 1 
HETATM 3 O O2A FAD . . . B 2 25.661 22.884 94.666 1 12.98 ? O2A FAD 1463 A 1 
HETATM 4 O O5B FAD . . . B 2 23.436 22.365 95.702 1 13.04 ? O5B FAD 1463 A 1 
HETATM 5 C C5B FAD . . . B 2 22.024 22.458 95.715 1 13.39 ? C5B FAD 1463 A 1 
HETATM 6 C C4B FAD . . . B 2 21.491 22.079 97.09 1 14.13 ? C4B FAD 1463 A 1 
HETATM 7 O O4B FAD . . . B 2 22.011 20.843 97.59 1 13.48 ? O4B FAD 1463 A 1 
HETATM 8 C C3B FAD . . . B 2 21.843 23.143 98.127 1 13.99 ? C3B FAD 1463 A 1 
HETATM 9 O O3B FAD . . . B 2 20.905 24.185 98.124 1 14.03 ? O3B FAD 1463 A 1 
HETATM 10 C C2B FAD . . . B 2 21.848 22.369 99.43 1 13.83 ? C2B FAD 1463 A 1 
HETATM 11 O O2B FAD . . . B 2 20.567 22.348 100.014 1 13.79 ? O2B FAD 1463 A 1 
HETATM 12 C C1B FAD . . . B 2 22.208 20.959 98.997 1 13.87 ? C1B FAD 1463 A 1 
HETATM 13 N N9A FAD . . . B 2 23.628 20.816 99.309 1 14.42 ? N9A FAD 1463 A 1 
HETATM 14 C C8A FAD . . . B 2 24.693 21.076 98.472 1 15.11 ? C8A FAD 1463 A 1 
HETATM 15 N N7A FAD . . . B 2 25.842 20.808 99.144 1 15.09 ? N7A FAD 1463 A 1 
HETATM 16 C C5A FAD . . . B 2 25.517 20.396 100.391 1 13.9 ? C5A FAD 1463 A 1 
HETATM 17 C C6A FAD . . . B 2 26.288 20.005 101.465 1 13.4 ? C6A FAD 1463 A 1 
HETATM 18 N N6A FAD . . . B 2 27.604 19.998 101.362 1 13.33 ? N6A FAD 1463 A 1 
HETATM 19 N N1A FAD . . . B 2 25.677 19.63 102.64 1 14.12 ? N1A FAD 1463 A 1 
HETATM 20 C C2A FAD . . . B 2 24.296 19.652 102.738 1 13.73 ? C2A FAD 1463 A 1 
HETATM 21 N N3A FAD . . . B 2 23.52 20.035 101.662 1 12.98 ? N3A FAD 1463 A 1 
HETATM 22 C C4A FAD . . . B 2 24.128 20.4 100.51 1 13.95 ? C4A FAD 1463 A 1 
HETATM 23 N N1 FAD . . . B 2 24.195 24.464 103.57 1 7.11 ? N1 FAD 1463 A 1 
HETATM 24 C C2 FAD . . . B 2 23.037 25.12 103.931 1 7.67 ? C2 FAD 1463 A 1 
HETATM 25 O O2 FAD . . . B 2 21.998 24.915 103.314 1 7.52 ? O2 FAD 1463 A 1 
HETATM 26 N N3 FAD . . . B 2 23.046 26.002 104.995 1 8.98 ? N3 FAD 1463 A 1 
HETATM 27 C C4 FAD . . . B 2 24.221 26.23 105.705 1 8.68 ? C4 FAD 1463 A 1 
HETATM 28 O O4 FAD . . . B 2 24.212 27.031 106.644 1 7.46 ? O4 FAD 1463 A 1 
HETATM 29 C C4X FAD . . . B 2 25.399 25.565 105.337 1 8.2 ? C4X FAD 1463 A 1 
HETATM 30 N N5 FAD . . . B 2 26.582 25.801 106.021 1 7.73 ? N5 FAD 1463 A 1 
HETATM 31 C C5X FAD . . . B 2 27.735 25.119 105.658 1 8.12 ? C5X FAD 1463 A 1 
HETATM 32 C C6 FAD . . . B 2 28.92 25.342 106.366 1 7.56 ? C6 FAD 1463 A 1 
HETATM 33 C C7 FAD . . . B 2 30.093 24.675 106.002 1 7.59 ? C7 FAD 1463 A 1 
HETATM 34 C C7M FAD . . . B 2 31.374 24.907 106.747 1 5.94 ? C7M FAD 1463 A 1 
HETATM 35 C C8 FAD . . . B 2 30.072 23.777 104.941 1 7.95 ? C8 FAD 1463 A 1 
HETATM 36 C C8M FAD . . . B 2 31.319 23.046 104.53 1 6.54 ? C8M FAD 1463 A 1 
HETATM 37 C C9 FAD . . . B 2 28.884 23.561 104.246 1 7.7 ? C9 FAD 1463 A 1 
HETATM 38 C C9A FAD . . . B 2 27.714 24.222 104.585 1 7.39 ? C9A FAD 1463 A 1 
HETATM 39 N N10 FAD . . . B 2 26.534 23.997 103.872 1 8.43 ? N10 FAD 1463 A 1 
HETATM 40 C C10 FAD . . . B 2 25.376 24.665 104.262 1 8.08 ? C10 FAD 1463 A 1 
HETATM 41 C C1' FAD . . . B 2 26.476 23.032 102.709 1 7.78 ? C1' FAD 1463 A 1 
HETATM 42 C C2' FAD . . . B 2 26.75 23.684 101.344 1 9.89 ? C2' FAD 1463 A 1 
HETATM 43 O O2' FAD . . . B 2 27.975 24.381 101.427 1 10.18 ? O2' FAD 1463 A 1 
HETATM 44 C C3' FAD . . . B 2 25.643 24.63 100.819 1 11.54 ? C3' FAD 1463 A 1 
HETATM 45 O O3' FAD . . . B 2 24.351 24.083 101.005 1 12.94 ? O3' FAD 1463 A 1 
HETATM 46 C C4' FAD . . . B 2 25.738 25.017 99.339 1 11.58 ? C4' FAD 1463 A 1 
HETATM 47 O O4' FAD . . . B 2 26.961 25.686 99.067 1 14.1 ? O4' FAD 1463 A 1 
HETATM 48 C C5' FAD . . . B 2 24.543 25.907 98.973 1 10.31 ? C5' FAD 1463 A 1 
HETATM 49 O O5' FAD . . . B 2 24.708 26.54 97.719 1 10.62 ? O5' FAD 1463 A 1 
HETATM 50 P P FAD . . . B 2 23.978 26.031 96.381 1 9.6 ? P FAD 1463 A 1 
HETATM 51 O O1P FAD . . . B 2 22.498 26.057 96.585 1 10.68 ? O1P FAD 1463 A 1 
HETATM 52 O O2P FAD . . . B 2 24.355 26.857 95.189 1 12.74 ? O2P FAD 1463 A 1 
HETATM 53 O O3P FAD . . . B 2 24.551 24.549 96.258 1 12.41 ? O3P FAD 1463 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           53 
#