data_4CDM # _model_server_result.job_id kUHBfXEolpmvU6BF1xaFyQ _model_server_result.datetime_utc '2024-12-26 05:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1464}' # _entry.id 4CDM # _exptl.entry_id 4CDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.322 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CDM _cell.length_a 69.89 _cell.length_b 69.89 _cell.length_c 245.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H17 N3 O7' _chem_comp.formula_weight 363.322 _chem_comp.id FO1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,8-didemethyl-8-hydroxy-5-deazariboflavin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 FO1 sing 174 n n N1 C13 FO1 doub 175 n n C1 O1 FO1 doub 176 n n C1 N2 FO1 sing 177 n n N2 C2 FO1 sing 178 n n N2 HN3 FO1 sing 179 n n C2 O2 FO1 doub 180 n n C2 C3 FO1 sing 181 n n C3 C4 FO1 doub 182 n n C3 C13 FO1 sing 183 n n C4 C5 FO1 sing 184 n n C4 H21 FO1 sing 185 n n C5 C6 FO1 doub 186 n y C5 C12 FO1 sing 187 n y C6 C7 FO1 sing 188 n y C6 HC6 FO1 sing 189 n n C7 C9 FO1 doub 190 n y C7 HC7 FO1 sing 191 n n C9 O10 FO1 sing 192 n n C9 C11 FO1 sing 193 n y O10 HC82 FO1 sing 194 n n C11 C12 FO1 doub 195 n y C11 HC9 FO1 sing 196 n n C12 N3 FO1 sing 197 n n N3 C13 FO1 sing 198 n n N3 C14 FO1 sing 199 n n C14 C15 FO1 sing 200 n n C14 HC11 FO1 sing 201 n n C14 HC12 FO1 sing 202 n n C15 O3 FO1 sing 203 n n C15 C16 FO1 sing 204 n n C15 HC2' FO1 sing 205 n n O3 HO2' FO1 sing 206 n n C16 O4 FO1 sing 207 n n C16 C17 FO1 sing 208 n n C16 HC3' FO1 sing 209 n n O4 HO3' FO1 sing 210 n n C17 O5 FO1 sing 211 n n C17 C18 FO1 sing 212 n n C17 HC4' FO1 sing 213 n n O5 HO4' FO1 sing 214 n n C18 O6 FO1 sing 215 n n C18 HC51 FO1 sing 216 n n C18 HC52 FO1 sing 217 n n O6 HO5' FO1 sing 218 n n # _atom_sites.entry_id 4CDM _atom_sites.fract_transf_matrix[1][1] 0.014308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 1463 1463 FAD FAD . C 3 FO1 A 1 1464 1464 FO1 FO1 . D 4 SO4 A 1 1465 1465 SO4 SO4 . E 4 SO4 A 1 1466 1466 SO4 SO4 . F 4 SO4 A 1 1467 1467 SO4 SO4 . G 4 SO4 A 1 1468 1468 SO4 SO4 . H 5 GOL A 1 1469 1469 GOL GOL . I 5 GOL A 1 1470 1470 GOL GOL . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . J 6 HOH A 3 2003 2003 HOH HOH . J 6 HOH A 4 2004 2004 HOH HOH . J 6 HOH A 5 2005 2005 HOH HOH . J 6 HOH A 6 2006 2006 HOH HOH . J 6 HOH A 7 2007 2007 HOH HOH . J 6 HOH A 8 2008 2008 HOH HOH . J 6 HOH A 9 2009 2009 HOH HOH . J 6 HOH A 10 2010 2010 HOH HOH . J 6 HOH A 11 2011 2011 HOH HOH . J 6 HOH A 12 2012 2012 HOH HOH . J 6 HOH A 13 2013 2013 HOH HOH . J 6 HOH A 14 2014 2014 HOH HOH . J 6 HOH A 15 2015 2015 HOH HOH . J 6 HOH A 16 2016 2016 HOH HOH . J 6 HOH A 17 2017 2017 HOH HOH . J 6 HOH A 18 2018 2018 HOH HOH . J 6 HOH A 19 2019 2019 HOH HOH . J 6 HOH A 20 2020 2020 HOH HOH . J 6 HOH A 21 2021 2021 HOH HOH . J 6 HOH A 22 2022 2022 HOH HOH . J 6 HOH A 23 2023 2023 HOH HOH . J 6 HOH A 24 2024 2024 HOH HOH . J 6 HOH A 25 2025 2025 HOH HOH . J 6 HOH A 26 2026 2026 HOH HOH . J 6 HOH A 27 2027 2027 HOH HOH . J 6 HOH A 28 2028 2028 HOH HOH . J 6 HOH A 29 2029 2029 HOH HOH . J 6 HOH A 30 2030 2030 HOH HOH . J 6 HOH A 31 2031 2031 HOH HOH . J 6 HOH A 32 2032 2032 HOH HOH . J 6 HOH A 33 2033 2033 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FO1 . . . C 3 10.505 30.181 111.604 0.7 18.95 ? N1 FO1 1464 A 1 HETATM 2 C C1 FO1 . . . C 3 9.435 30.62 112.344 0.7 19.21 ? C1 FO1 1464 A 1 HETATM 3 O O1 FO1 . . . C 3 8.449 29.866 112.523 0.7 17.37 ? O1 FO1 1464 A 1 HETATM 4 N N2 FO1 . . . C 3 9.393 31.852 112.896 0.7 19.43 ? N2 FO1 1464 A 1 HETATM 5 C C2 FO1 . . . C 3 10.4 32.737 112.767 0.7 19.7 ? C2 FO1 1464 A 1 HETATM 6 O O2 FO1 . . . C 3 10.333 33.874 113.294 0.7 18.41 ? O2 FO1 1464 A 1 HETATM 7 C C3 FO1 . . . C 3 11.6 32.327 111.982 0.7 19.71 ? C3 FO1 1464 A 1 HETATM 8 C C4 FO1 . . . C 3 12.679 33.193 111.818 0.7 19.63 ? C4 FO1 1464 A 1 HETATM 9 C C5 FO1 . . . C 3 13.779 32.783 111.077 0.7 20.27 ? C5 FO1 1464 A 1 HETATM 10 C C6 FO1 . . . C 3 14.856 33.656 110.903 0.7 21.3 ? C6 FO1 1464 A 1 HETATM 11 C C7 FO1 . . . C 3 15.964 33.229 110.159 0.7 21.79 ? C7 FO1 1464 A 1 HETATM 12 C C9 FO1 . . . C 3 15.997 31.947 109.592 0.7 20.72 ? C9 FO1 1464 A 1 HETATM 13 O O10 FO1 . . . C 3 17.08 31.571 108.866 0.7 21.46 ? O10 FO1 1464 A 1 HETATM 14 C C11 FO1 . . . C 3 14.943 31.047 109.736 0.7 19.36 ? C11 FO1 1464 A 1 HETATM 15 C C12 FO1 . . . C 3 13.814 31.41 110.463 0.7 19.73 ? C12 FO1 1464 A 1 HETATM 16 N N3 FO1 . . . C 3 12.721 30.511 110.636 0.7 19.57 ? N3 FO1 1464 A 1 HETATM 17 C C13 FO1 . . . C 3 11.599 30.955 111.389 0.7 18.93 ? C13 FO1 1464 A 1 HETATM 18 C C14 FO1 . . . C 3 12.735 29.176 109.997 0.7 18.8 ? C14 FO1 1464 A 1 HETATM 19 C C15 FO1 . . . C 3 13.488 28.044 110.692 0.7 18 ? C15 FO1 1464 A 1 HETATM 20 O O3 FO1 . . . C 3 14.151 27.28 109.676 0.7 17.9 ? O3 FO1 1464 A 1 HETATM 21 C C16 FO1 . . . C 3 12.491 27.152 111.421 0.7 16.11 ? C16 FO1 1464 A 1 HETATM 22 O O4 FO1 . . . C 3 11.877 27.905 112.468 0.7 17.16 ? O4 FO1 1464 A 1 HETATM 23 C C17 FO1 . . . C 3 13.088 25.886 112.011 0.7 14.38 ? C17 FO1 1464 A 1 HETATM 24 O O5 FO1 . . . C 3 13.495 25.047 110.94 0.7 13.47 ? O5 FO1 1464 A 1 HETATM 25 C C18 FO1 . . . C 3 12.008 25.146 112.775 0.7 14.65 ? C18 FO1 1464 A 1 HETATM 26 O O6 FO1 . . . C 3 10.828 25.045 111.962 0.7 12.72 ? O6 FO1 1464 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #