data_4CEB # _model_server_result.job_id m80p-BZCQKORIaG5pZr9VQ _model_server_result.datetime_utc '2024-11-22 04:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ceb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1216}' # _entry.id 4CEB # _exptl.entry_id 4CEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.629 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-[(2S)-5-carboxy-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxin-6-yl]methyl-[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl]-prop-2-enyl-azanium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CEB _cell.length_a 70.677 _cell.length_b 70.677 _cell.length_c 67.125 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N # _chem_comp.formula 'C32 H35 N2 O8 1' _chem_comp.formula_weight 575.629 _chem_comp.id ZSV _chem_comp.mon_nstd_flag . _chem_comp.name (R)-[(2S)-5-carboxy-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxin-6-yl]methyl-[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl]-prop-2-enyl-azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ZSV sing 409 n y C1 C3 ZSV doub 410 n y C2 C4 ZSV doub 411 n y C3 C11 ZSV sing 412 n y C4 C14 ZSV sing 413 n y C5 C8 ZSV sing 414 n y C5 C15 ZSV doub 415 n y C6 C9 ZSV sing 416 n y C6 C13 ZSV doub 417 n y C7 C10 ZSV doub 418 n y C7 C13 ZSV sing 419 n y C8 C16 ZSV doub 420 n y C9 C18 ZSV doub 421 n y C10 C18 ZSV sing 422 n y C11 C14 ZSV doub 423 n y C11 C21 ZSV sing 424 n n C12 C15 ZSV sing 425 n y C12 C17 ZSV doub 426 n y C12 C22 ZSV sing 427 n n C13 C27 ZSV sing 428 n n C14 C28 ZSV sing 429 n n C15 C29 ZSV sing 430 n n C16 C17 ZSV sing 431 n y C16 O41 ZSV sing 432 n n C17 O40 ZSV sing 433 n n C18 O42 ZSV sing 434 n n C19 C20 ZSV doub 435 n n C20 C30 ZSV sing 436 n n C21 N33 ZSV sing 437 n n C21 O37 ZSV doub 438 n n C22 O35 ZSV sing 439 n n C22 O38 ZSV doub 440 n n C23 C31 ZSV sing 441 n n C23 O36 ZSV sing 442 n n C23 O39 ZSV doub 443 n n C24 C25 ZSV sing 444 n n C24 O40 ZSV sing 445 n n C25 C32 ZSV sing 446 n n C25 O41 ZSV sing 447 n n C26 O42 ZSV sing 448 n n C27 N33 ZSV sing 449 n n C28 N34 ZSV sing 450 n n C29 N34 ZSV sing 451 n n C30 N34 ZSV sing 452 n n C31 C32 ZSV sing 453 n n C1 H1 ZSV sing 454 n n C2 H2 ZSV sing 455 n n C3 H3 ZSV sing 456 n n C4 H4 ZSV sing 457 n n C5 H5 ZSV sing 458 n n C8 H8 ZSV sing 459 n n C6 H6 ZSV sing 460 n n C9 H9 ZSV sing 461 n n C7 H7 ZSV sing 462 n n C10 H10 ZSV sing 463 n n C27 H271 ZSV sing 464 n n C27 H272 ZSV sing 465 n n C28 H281 ZSV sing 466 n n C28 H282 ZSV sing 467 n n C29 H291 ZSV sing 468 n n C29 H292 ZSV sing 469 n n C19 H191 ZSV sing 470 n n C19 H192 ZSV sing 471 n n C20 H20 ZSV sing 472 n n C30 H301 ZSV sing 473 n n C30 H302 ZSV sing 474 n n N33 H33 ZSV sing 475 n n O35 H35 ZSV sing 476 n n C31 H311 ZSV sing 477 n n C31 H312 ZSV sing 478 n n O36 H36 ZSV sing 479 n n C24 H241 ZSV sing 480 n n C24 H242 ZSV sing 481 n n C25 H25 ZSV sing 482 n n C32 H321 ZSV sing 483 n n C32 H322 ZSV sing 484 n n C26 H261 ZSV sing 485 n n C26 H262 ZSV sing 486 n n C26 H263 ZSV sing 487 n n N34 H34 ZSV sing 488 n n # _atom_sites.entry_id 4CEB _atom_sites.fract_transf_matrix[1][1] 0.014149 _atom_sites.fract_transf_matrix[1][2] 0.008169 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 3 ACY A 1 1212 1212 ACY ACY . F 4 EDO A 1 1213 1213 EDO EDO . G 5 GOL A 1 1214 1214 GOL GOL . H 2 SO4 B 1 1210 1210 SO4 SO4 . I 2 SO4 B 1 1211 1211 SO4 SO4 . J 3 ACY B 1 1212 1212 ACY ACY . K 4 EDO B 1 1213 1213 EDO EDO . L 5 GOL B 1 1214 1214 GOL GOL . M 6 ZSV B 1 1215 1215 ZSV ZSV . N 6 ZSV B 1 1216 1216 ZSV ZSV . O 7 HOH A 1 2001 2001 HOH HOH . O 7 HOH A 2 2002 2002 HOH HOH . O 7 HOH A 3 2003 2003 HOH HOH . O 7 HOH A 4 2004 2004 HOH HOH . O 7 HOH A 5 2005 2005 HOH HOH . O 7 HOH A 6 2006 2006 HOH HOH . O 7 HOH A 7 2007 2007 HOH HOH . O 7 HOH A 8 2008 2008 HOH HOH . O 7 HOH A 9 2009 2009 HOH HOH . O 7 HOH A 10 2010 2010 HOH HOH . O 7 HOH A 11 2011 2011 HOH HOH . O 7 HOH A 12 2012 2012 HOH HOH . O 7 HOH A 13 2013 2013 HOH HOH . O 7 HOH A 14 2014 2014 HOH HOH . O 7 HOH A 15 2015 2015 HOH HOH . O 7 HOH A 16 2016 2016 HOH HOH . O 7 HOH A 17 2017 2017 HOH HOH . O 7 HOH A 18 2018 2018 HOH HOH . O 7 HOH A 19 2019 2019 HOH HOH . O 7 HOH A 20 2020 2020 HOH HOH . O 7 HOH A 21 2021 2021 HOH HOH . O 7 HOH A 22 2022 2022 HOH HOH . O 7 HOH A 23 2023 2023 HOH HOH . O 7 HOH A 24 2024 2024 HOH HOH . O 7 HOH A 25 2025 2025 HOH HOH . O 7 HOH A 26 2026 2026 HOH HOH . O 7 HOH A 27 2027 2027 HOH HOH . O 7 HOH A 28 2028 2028 HOH HOH . O 7 HOH A 29 2029 2029 HOH HOH . O 7 HOH A 30 2030 2030 HOH HOH . O 7 HOH A 31 2031 2031 HOH HOH . O 7 HOH A 32 2032 2032 HOH HOH . O 7 HOH A 33 2033 2033 HOH HOH . O 7 HOH A 34 2034 2034 HOH HOH . O 7 HOH A 35 2035 2035 HOH HOH . O 7 HOH A 36 2036 2036 HOH HOH . O 7 HOH A 37 2037 2037 HOH HOH . O 7 HOH A 38 2038 2038 HOH HOH . O 7 HOH A 39 2039 2039 HOH HOH . O 7 HOH A 40 2040 2040 HOH HOH . O 7 HOH A 41 2041 2041 HOH HOH . O 7 HOH A 42 2042 2042 HOH HOH . O 7 HOH A 43 2043 2043 HOH HOH . O 7 HOH A 44 2044 2044 HOH HOH . O 7 HOH A 45 2045 2045 HOH HOH . O 7 HOH A 46 2046 2046 HOH HOH . O 7 HOH A 47 2047 2047 HOH HOH . O 7 HOH A 48 2048 2048 HOH HOH . O 7 HOH A 49 2049 2049 HOH HOH . O 7 HOH A 50 2050 2050 HOH HOH . O 7 HOH A 51 2051 2051 HOH HOH . O 7 HOH A 52 2052 2052 HOH HOH . O 7 HOH A 53 2053 2053 HOH HOH . O 7 HOH A 54 2054 2054 HOH HOH . O 7 HOH A 55 2055 2055 HOH HOH . O 7 HOH A 56 2056 2056 HOH HOH . O 7 HOH A 57 2057 2057 HOH HOH . O 7 HOH A 58 2058 2058 HOH HOH . O 7 HOH A 59 2059 2059 HOH HOH . O 7 HOH A 60 2060 2060 HOH HOH . O 7 HOH A 61 2061 2061 HOH HOH . O 7 HOH A 62 2062 2062 HOH HOH . O 7 HOH A 63 2063 2063 HOH HOH . O 7 HOH A 64 2064 2064 HOH HOH . O 7 HOH A 65 2065 2065 HOH HOH . O 7 HOH A 66 2066 2066 HOH HOH . O 7 HOH A 67 2067 2067 HOH HOH . O 7 HOH A 68 2068 2068 HOH HOH . O 7 HOH A 69 2069 2069 HOH HOH . O 7 HOH A 70 2070 2070 HOH HOH . O 7 HOH A 71 2071 2071 HOH HOH . O 7 HOH A 72 2072 2072 HOH HOH . P 7 HOH B 1 2001 2001 HOH HOH . P 7 HOH B 2 2002 2002 HOH HOH . P 7 HOH B 3 2003 2003 HOH HOH . P 7 HOH B 4 2004 2004 HOH HOH . P 7 HOH B 5 2005 2005 HOH HOH . P 7 HOH B 6 2006 2006 HOH HOH . P 7 HOH B 7 2007 2007 HOH HOH . P 7 HOH B 8 2008 2008 HOH HOH . P 7 HOH B 9 2009 2009 HOH HOH . P 7 HOH B 10 2010 2010 HOH HOH . P 7 HOH B 11 2011 2011 HOH HOH . P 7 HOH B 12 2012 2012 HOH HOH . P 7 HOH B 13 2013 2013 HOH HOH . P 7 HOH B 14 2014 2014 HOH HOH . P 7 HOH B 15 2015 2015 HOH HOH . P 7 HOH B 16 2016 2016 HOH HOH . P 7 HOH B 17 2017 2017 HOH HOH . P 7 HOH B 18 2018 2018 HOH HOH . P 7 HOH B 19 2019 2019 HOH HOH . P 7 HOH B 20 2020 2020 HOH HOH . P 7 HOH B 21 2021 2021 HOH HOH . P 7 HOH B 22 2022 2022 HOH HOH . P 7 HOH B 23 2023 2023 HOH HOH . P 7 HOH B 24 2024 2024 HOH HOH . P 7 HOH B 25 2025 2025 HOH HOH . P 7 HOH B 26 2026 2026 HOH HOH . P 7 HOH B 27 2027 2027 HOH HOH . P 7 HOH B 28 2028 2028 HOH HOH . P 7 HOH B 29 2029 2029 HOH HOH . P 7 HOH B 30 2030 2030 HOH HOH . P 7 HOH B 31 2031 2031 HOH HOH . P 7 HOH B 32 2032 2032 HOH HOH . P 7 HOH B 33 2033 2033 HOH HOH . P 7 HOH B 34 2034 2034 HOH HOH . P 7 HOH B 35 2035 2035 HOH HOH . P 7 HOH B 36 2036 2036 HOH HOH . P 7 HOH B 37 2037 2037 HOH HOH . P 7 HOH B 38 2038 2038 HOH HOH . P 7 HOH B 39 2039 2039 HOH HOH . P 7 HOH B 40 2040 2040 HOH HOH . P 7 HOH B 41 2041 2041 HOH HOH . P 7 HOH B 42 2042 2042 HOH HOH . P 7 HOH B 43 2043 2043 HOH HOH . P 7 HOH B 44 2044 2044 HOH HOH . P 7 HOH B 45 2045 2045 HOH HOH . P 7 HOH B 46 2046 2046 HOH HOH . P 7 HOH B 47 2047 2047 HOH HOH . P 7 HOH B 48 2048 2048 HOH HOH . P 7 HOH B 49 2049 2049 HOH HOH . P 7 HOH B 50 2050 2050 HOH HOH . P 7 HOH B 51 2051 2051 HOH HOH . P 7 HOH B 52 2052 2052 HOH HOH . P 7 HOH B 53 2053 2053 HOH HOH . P 7 HOH B 54 2054 2054 HOH HOH . P 7 HOH B 55 2055 2055 HOH HOH . P 7 HOH B 56 2056 2056 HOH HOH . P 7 HOH B 57 2057 2057 HOH HOH . P 7 HOH B 58 2058 2058 HOH HOH . P 7 HOH B 59 2059 2059 HOH HOH . P 7 HOH B 60 2060 2060 HOH HOH . P 7 HOH B 61 2061 2061 HOH HOH . P 7 HOH B 62 2062 2062 HOH HOH . P 7 HOH B 63 2063 2063 HOH HOH . P 7 HOH B 64 2064 2064 HOH HOH . P 7 HOH B 65 2065 2065 HOH HOH . P 7 HOH B 66 2066 2066 HOH HOH . P 7 HOH B 67 2067 2067 HOH HOH . P 7 HOH B 68 2068 2068 HOH HOH . P 7 HOH B 69 2069 2069 HOH HOH . P 7 HOH B 70 2070 2070 HOH HOH . P 7 HOH B 71 2071 2071 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZSV . . . N 6 11.618 5.644 19.477 1 25.56 ? C1 ZSV 1216 B 1 HETATM 2 C C2 ZSV . . . N 6 12.721 6.093 18.78 1 24.31 ? C2 ZSV 1216 B 1 HETATM 3 C C3 ZSV . . . N 6 10.574 5.021 18.81 1 25.29 ? C3 ZSV 1216 B 1 HETATM 4 C C4 ZSV . . . N 6 12.787 5.915 17.411 1 25.96 ? C4 ZSV 1216 B 1 HETATM 5 C C5 ZSV . . . N 6 9.49 7.778 12.253 1 20.65 ? C5 ZSV 1216 B 1 HETATM 6 C C6 ZSV . . . N 6 6.918 4.498 13.98 1 22.02 ? C6 ZSV 1216 B 1 HETATM 7 C C7 ZSV . . . N 6 6.485 6.404 15.335 1 26.84 ? C7 ZSV 1216 B 1 HETATM 8 C C8 ZSV . . . N 6 9.46 8.758 11.276 1 19.82 ? C8 ZSV 1216 B 1 HETATM 9 C C9 ZSV . . . N 6 6.673 5.253 12.856 1 21.73 ? C9 ZSV 1216 B 1 HETATM 10 C C10 ZSV . . . N 6 6.246 7.176 14.209 1 24.88 ? C10 ZSV 1216 B 1 HETATM 11 C C11 ZSV . . . N 6 10.651 4.848 17.439 1 24 ? C11 ZSV 1216 B 1 HETATM 12 C C12 ZSV . . . N 6 10.796 9.223 13.654 1 18.78 ? C12 ZSV 1216 B 1 HETATM 13 C C13 ZSV . . . N 6 6.83 5.069 15.23 1 23.89 ? C13 ZSV 1216 B 1 HETATM 14 C C14 ZSV . . . N 6 11.753 5.297 16.737 1 23.11 ? C14 ZSV 1216 B 1 HETATM 15 C C15 ZSV . . . N 6 10.153 8.008 13.447 1 20.8 ? C15 ZSV 1216 B 1 HETATM 16 C C16 ZSV . . . N 6 10.106 9.956 11.471 1 18.05 ? C16 ZSV 1216 B 1 HETATM 17 C C17 ZSV . . . N 6 10.76 10.202 12.666 1 18.42 ? C17 ZSV 1216 B 1 HETATM 18 C C18 ZSV . . . N 6 6.335 6.585 12.965 1 23.87 ? C18 ZSV 1216 B 1 HETATM 19 C C19 ZSV . . . N 6 12.461 4.087 11.855 1 31.9 ? C19 ZSV 1216 B 1 HETATM 20 C C20 ZSV . . . N 6 11.759 5.155 12.247 1 29.17 ? C20 ZSV 1216 B 1 HETATM 21 C C21 ZSV . . . N 6 9.525 4.185 16.758 1 23.88 ? C21 ZSV 1216 B 1 HETATM 22 C C22 ZSV . . . N 6 11.48 9.513 14.956 1 19.76 ? C22 ZSV 1216 B 1 HETATM 23 C C23 ZSV . . . N 6 12.266 12.055 7.673 1 25.86 ? C23 ZSV 1216 B 1 HETATM 24 C C24 ZSV . . . N 6 11.17 12.406 11.913 1 19.68 ? C24 ZSV 1216 B 1 HETATM 25 C C25 ZSV . . . N 6 11.138 11.807 10.533 1 18.88 ? C25 ZSV 1216 B 1 HETATM 26 C C26 ZSV . . . N 6 5.488 8.535 11.967 1 23.84 ? C26 ZSV 1216 B 1 HETATM 27 C C27 ZSV . . . N 6 7.089 4.232 16.451 1 23.92 ? C27 ZSV 1216 B 1 HETATM 28 C C28 ZSV . . . N 6 11.859 5.121 15.261 1 25.2 ? C28 ZSV 1216 B 1 HETATM 29 C C29 ZSV . . . N 6 10.176 6.902 14.46 1 21 ? C29 ZSV 1216 B 1 HETATM 30 C C30 ZSV . . . N 6 12.309 6.219 13.14 1 26.47 ? C30 ZSV 1216 B 1 HETATM 31 C C31 ZSV . . . N 6 10.856 12.435 8.1 1 23.01 ? C31 ZSV 1216 B 1 HETATM 32 C C32 ZSV . . . N 6 10.96 12.931 9.53 1 21.69 ? C32 ZSV 1216 B 1 HETATM 33 N N33 ZSV . . . N 6 8.292 4.644 17.127 1 22.83 ? N33 ZSV 1216 B 1 HETATM 34 N N34 ZSV . . . N 6 11.606 6.36 14.465 1 24.93 ? N34 ZSV 1216 B 1 HETATM 35 O O35 ZSV . . . N 6 11.229 10.667 15.418 1 17.4 ? O35 ZSV 1216 B 1 HETATM 36 O O36 ZSV . . . N 6 13.212 12.813 8.033 1 28.46 ? O36 ZSV 1216 B 1 HETATM 37 O O37 ZSV . . . N 6 9.712 3.296 15.941 1 26.45 ? O37 ZSV 1216 B 1 HETATM 38 O O38 ZSV . . . N 6 12.124 8.626 15.57 1 19.85 ? O38 ZSV 1216 B 1 HETATM 39 O O39 ZSV . . . N 6 12.33 11.001 6.979 1 25.03 ? O39 ZSV 1216 B 1 HETATM 40 O O40 ZSV . . . N 6 11.44 11.402 12.89 1 18.72 ? O40 ZSV 1216 B 1 HETATM 41 O O41 ZSV . . . N 6 10.044 10.886 10.446 1 18.43 ? O41 ZSV 1216 B 1 HETATM 42 O O42 ZSV . . . N 6 6.125 7.27 11.773 1 23.15 ? O42 ZSV 1216 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #