data_4CED # _model_server_result.job_id C5HRpAwH6GmI4_PtN89oGw _model_server_result.datetime_utc '2024-11-09 02:14:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ced # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1216}' # _entry.id 4CED # _exptl.entry_id 4CED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.557 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-6-[[[2-(furan-2-ylmethylcarbamoyl)phenyl]methyl-prop-2-enyl-amino]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CED _cell.length_a 70.668 _cell.length_b 70.668 _cell.length_c 66.647 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CED _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N # _chem_comp.formula 'C29 H30 N2 O8' _chem_comp.formula_weight 534.557 _chem_comp.id 9NS _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-6-[[[2-(furan-2-ylmethylcarbamoyl)phenyl]methyl-prop-2-enyl-amino]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 9NS sing 1 n y C1 C4 9NS doub 2 n y C2 C5 9NS doub 3 n y C3 C8 9NS sing 4 n y C3 C9 9NS doub 5 n y C4 C10 9NS sing 6 n y C5 C12 9NS sing 7 n y C6 C7 9NS sing 8 n y C6 C13 9NS doub 9 n y C7 C14 9NS doub 10 n y C8 C16 9NS doub 11 n y C9 O37 9NS sing 12 n y C10 C12 9NS doub 13 n y C10 C19 9NS sing 14 n n C11 C13 9NS sing 15 n y C11 C15 9NS doub 16 n y C11 C20 9NS sing 17 n n C12 C24 9NS sing 18 n n C13 C25 9NS sing 19 n n C14 C15 9NS sing 20 n y C14 O39 9NS sing 21 n n C15 O38 9NS sing 22 n n C16 C26 9NS sing 23 n n C16 O37 9NS sing 24 n y C17 C18 9NS doub 25 n n C18 C27 9NS sing 26 n n C19 N30 9NS sing 27 n n C19 O34 9NS doub 28 n n C20 O32 9NS sing 29 n n C20 O35 9NS doub 30 n n C21 C28 9NS sing 31 n n C21 O33 9NS sing 32 n n C21 O36 9NS doub 33 n n C22 C23 9NS sing 34 n n C22 O38 9NS sing 35 n n C23 C29 9NS sing 36 n n C23 O39 9NS sing 37 n n C24 N31 9NS sing 38 n n C25 N31 9NS sing 39 n n C26 N30 9NS sing 40 n n C27 N31 9NS sing 41 n n C28 C29 9NS sing 42 n n C9 H9 9NS sing 43 n n C1 H1 9NS sing 44 n n C2 H2 9NS sing 45 n n C4 H4 9NS sing 46 n n C5 H5 9NS sing 47 n n C3 H3 9NS sing 48 n n C8 H8 9NS sing 49 n n C6 H6 9NS sing 50 n n C7 H7 9NS sing 51 n n C24 H241 9NS sing 52 n n C24 H242 9NS sing 53 n n C25 H251 9NS sing 54 n n C25 H252 9NS sing 55 n n C26 H261 9NS sing 56 n n C26 H262 9NS sing 57 n n C17 H171 9NS sing 58 n n C17 H172 9NS sing 59 n n C18 H18 9NS sing 60 n n C27 H271 9NS sing 61 n n C27 H272 9NS sing 62 n n N30 H30 9NS sing 63 n n O32 H32 9NS sing 64 n n C28 H281 9NS sing 65 n n C28 H282 9NS sing 66 n n O33 H33 9NS sing 67 n n C22 H221 9NS sing 68 n n C22 H222 9NS sing 69 n n C23 H23 9NS sing 70 n n C29 H291 9NS sing 71 n n C29 H292 9NS sing 72 n n # _atom_sites.entry_id 4CED _atom_sites.fract_transf_matrix[1][1] 0.014151 _atom_sites.fract_transf_matrix[1][2] 0.00817 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 CL A 1 1213 1213 CL CL . G 4 GOL A 1 1214 1214 GOL GOL . H 2 SO4 B 1 1210 1210 SO4 SO4 . I 2 SO4 B 1 1211 1211 SO4 SO4 . J 2 SO4 B 1 1212 1212 SO4 SO4 . K 3 CL B 1 1213 1213 CL CL . L 4 GOL B 1 1214 1214 GOL GOL . M 5 9NS B 1 1215 1215 9NS 9NS . N 5 9NS B 1 1216 1216 9NS 9NS . O 6 HOH A 1 2001 2001 HOH HOH . O 6 HOH A 2 2002 2002 HOH HOH . O 6 HOH A 3 2003 2003 HOH HOH . O 6 HOH A 4 2004 2004 HOH HOH . O 6 HOH A 5 2005 2005 HOH HOH . O 6 HOH A 6 2006 2006 HOH HOH . O 6 HOH A 7 2007 2007 HOH HOH . O 6 HOH A 8 2008 2008 HOH HOH . O 6 HOH A 9 2009 2009 HOH HOH . O 6 HOH A 10 2010 2010 HOH HOH . O 6 HOH A 11 2011 2011 HOH HOH . O 6 HOH A 12 2012 2012 HOH HOH . O 6 HOH A 13 2013 2013 HOH HOH . O 6 HOH A 14 2014 2014 HOH HOH . O 6 HOH A 15 2015 2015 HOH HOH . O 6 HOH A 16 2016 2016 HOH HOH . O 6 HOH A 17 2017 2017 HOH HOH . O 6 HOH A 18 2018 2018 HOH HOH . O 6 HOH A 19 2019 2019 HOH HOH . O 6 HOH A 20 2020 2020 HOH HOH . O 6 HOH A 21 2021 2021 HOH HOH . O 6 HOH A 22 2022 2022 HOH HOH . O 6 HOH A 23 2023 2023 HOH HOH . O 6 HOH A 24 2024 2024 HOH HOH . O 6 HOH A 25 2025 2025 HOH HOH . O 6 HOH A 26 2026 2026 HOH HOH . O 6 HOH A 27 2027 2027 HOH HOH . O 6 HOH A 28 2028 2028 HOH HOH . O 6 HOH A 29 2029 2029 HOH HOH . O 6 HOH A 30 2030 2030 HOH HOH . O 6 HOH A 31 2031 2031 HOH HOH . O 6 HOH A 32 2032 2032 HOH HOH . O 6 HOH A 33 2033 2033 HOH HOH . O 6 HOH A 34 2034 2034 HOH HOH . O 6 HOH A 35 2035 2035 HOH HOH . O 6 HOH A 36 2036 2036 HOH HOH . O 6 HOH A 37 2037 2037 HOH HOH . O 6 HOH A 38 2038 2038 HOH HOH . O 6 HOH A 39 2039 2039 HOH HOH . O 6 HOH A 40 2040 2040 HOH HOH . O 6 HOH A 41 2041 2041 HOH HOH . O 6 HOH A 42 2042 2042 HOH HOH . O 6 HOH A 43 2043 2043 HOH HOH . O 6 HOH A 44 2044 2044 HOH HOH . O 6 HOH A 45 2045 2045 HOH HOH . O 6 HOH A 46 2046 2046 HOH HOH . O 6 HOH A 47 2047 2047 HOH HOH . O 6 HOH A 48 2048 2048 HOH HOH . O 6 HOH A 49 2049 2049 HOH HOH . O 6 HOH A 50 2050 2050 HOH HOH . O 6 HOH A 51 2051 2051 HOH HOH . O 6 HOH A 52 2052 2052 HOH HOH . O 6 HOH A 53 2053 2053 HOH HOH . O 6 HOH A 54 2054 2054 HOH HOH . O 6 HOH A 55 2055 2055 HOH HOH . O 6 HOH A 56 2056 2056 HOH HOH . O 6 HOH A 57 2057 2057 HOH HOH . O 6 HOH A 58 2058 2058 HOH HOH . O 6 HOH A 59 2059 2059 HOH HOH . O 6 HOH A 60 2060 2060 HOH HOH . O 6 HOH A 61 2061 2061 HOH HOH . O 6 HOH A 62 2062 2062 HOH HOH . O 6 HOH A 63 2063 2063 HOH HOH . O 6 HOH A 64 2064 2064 HOH HOH . O 6 HOH A 65 2065 2065 HOH HOH . O 6 HOH A 66 2066 2066 HOH HOH . O 6 HOH A 67 2067 2067 HOH HOH . O 6 HOH A 68 2068 2068 HOH HOH . O 6 HOH A 69 2069 2069 HOH HOH . O 6 HOH A 70 2070 2070 HOH HOH . O 6 HOH A 71 2071 2071 HOH HOH . O 6 HOH A 72 2072 2072 HOH HOH . O 6 HOH A 73 2073 2073 HOH HOH . O 6 HOH A 74 2074 2074 HOH HOH . O 6 HOH A 75 2075 2075 HOH HOH . O 6 HOH A 76 2076 2076 HOH HOH . O 6 HOH A 77 2077 2077 HOH HOH . O 6 HOH A 78 2078 2078 HOH HOH . O 6 HOH A 79 2079 2079 HOH HOH . O 6 HOH A 80 2080 2080 HOH HOH . O 6 HOH A 81 2081 2081 HOH HOH . O 6 HOH A 82 2082 2082 HOH HOH . O 6 HOH A 83 2083 2083 HOH HOH . O 6 HOH A 84 2084 2084 HOH HOH . O 6 HOH A 85 2085 2085 HOH HOH . O 6 HOH A 86 2086 2086 HOH HOH . O 6 HOH A 87 2087 2087 HOH HOH . O 6 HOH A 88 2088 2088 HOH HOH . O 6 HOH A 89 2089 2089 HOH HOH . O 6 HOH A 90 2090 2090 HOH HOH . P 6 HOH B 1 2001 2001 HOH HOH . P 6 HOH B 2 2002 2002 HOH HOH . P 6 HOH B 3 2003 2003 HOH HOH . P 6 HOH B 4 2004 2004 HOH HOH . P 6 HOH B 5 2005 2005 HOH HOH . P 6 HOH B 6 2006 2006 HOH HOH . P 6 HOH B 7 2007 2007 HOH HOH . P 6 HOH B 8 2008 2008 HOH HOH . P 6 HOH B 9 2009 2009 HOH HOH . P 6 HOH B 10 2010 2010 HOH HOH . P 6 HOH B 11 2011 2011 HOH HOH . P 6 HOH B 12 2012 2012 HOH HOH . P 6 HOH B 13 2013 2013 HOH HOH . P 6 HOH B 14 2014 2014 HOH HOH . P 6 HOH B 15 2015 2015 HOH HOH . P 6 HOH B 16 2016 2016 HOH HOH . P 6 HOH B 17 2017 2017 HOH HOH . P 6 HOH B 18 2018 2018 HOH HOH . P 6 HOH B 19 2019 2019 HOH HOH . P 6 HOH B 20 2020 2020 HOH HOH . P 6 HOH B 21 2021 2021 HOH HOH . P 6 HOH B 22 2022 2022 HOH HOH . P 6 HOH B 23 2023 2023 HOH HOH . P 6 HOH B 24 2024 2024 HOH HOH . P 6 HOH B 25 2025 2025 HOH HOH . P 6 HOH B 26 2026 2026 HOH HOH . P 6 HOH B 27 2027 2027 HOH HOH . P 6 HOH B 28 2028 2028 HOH HOH . P 6 HOH B 29 2029 2029 HOH HOH . P 6 HOH B 30 2030 2030 HOH HOH . P 6 HOH B 31 2031 2031 HOH HOH . P 6 HOH B 32 2032 2032 HOH HOH . P 6 HOH B 33 2033 2033 HOH HOH . P 6 HOH B 34 2034 2034 HOH HOH . P 6 HOH B 35 2035 2035 HOH HOH . P 6 HOH B 36 2036 2036 HOH HOH . P 6 HOH B 37 2037 2037 HOH HOH . P 6 HOH B 38 2038 2038 HOH HOH . P 6 HOH B 39 2039 2039 HOH HOH . P 6 HOH B 40 2040 2040 HOH HOH . P 6 HOH B 41 2041 2041 HOH HOH . P 6 HOH B 42 2042 2042 HOH HOH . P 6 HOH B 43 2043 2043 HOH HOH . P 6 HOH B 44 2044 2044 HOH HOH . P 6 HOH B 45 2045 2045 HOH HOH . P 6 HOH B 46 2046 2046 HOH HOH . P 6 HOH B 47 2047 2047 HOH HOH . P 6 HOH B 48 2048 2048 HOH HOH . P 6 HOH B 49 2049 2049 HOH HOH . P 6 HOH B 50 2050 2050 HOH HOH . P 6 HOH B 51 2051 2051 HOH HOH . P 6 HOH B 52 2052 2052 HOH HOH . P 6 HOH B 53 2053 2053 HOH HOH . P 6 HOH B 54 2054 2054 HOH HOH . P 6 HOH B 55 2055 2055 HOH HOH . P 6 HOH B 56 2056 2056 HOH HOH . P 6 HOH B 57 2057 2057 HOH HOH . P 6 HOH B 58 2058 2058 HOH HOH . P 6 HOH B 59 2059 2059 HOH HOH . P 6 HOH B 60 2060 2060 HOH HOH . P 6 HOH B 61 2061 2061 HOH HOH . P 6 HOH B 62 2062 2062 HOH HOH . P 6 HOH B 63 2063 2063 HOH HOH . P 6 HOH B 64 2064 2064 HOH HOH . P 6 HOH B 65 2065 2065 HOH HOH . P 6 HOH B 66 2066 2066 HOH HOH . P 6 HOH B 67 2067 2067 HOH HOH . P 6 HOH B 68 2068 2068 HOH HOH . P 6 HOH B 69 2069 2069 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9NS . . . N 5 36.129 -8.086 19.324 0.95 32.93 ? C1 9NS 1216 B 1 HETATM 2 C C2 9NS . . . N 5 36.466 -6.932 18.651 0.95 33.9 ? C2 9NS 1216 B 1 HETATM 3 C C3 9NS . . . N 5 33.083 -12.104 12.934 0.95 37.73 ? C3 9NS 1216 B 1 HETATM 4 C C4 9NS . . . N 5 35.964 -9.27 18.632 0.95 33.54 ? C4 9NS 1216 B 1 HETATM 5 C C5 9NS . . . N 5 36.626 -6.972 17.281 0.95 32.87 ? C5 9NS 1216 B 1 HETATM 6 C C6 9NS . . . N 5 33.124 -8.324 12.134 0.95 20.97 ? C6 9NS 1216 B 1 HETATM 7 C C7 9NS . . . N 5 32.296 -7.777 11.169 0.95 19.38 ? C7 9NS 1216 B 1 HETATM 8 C C8 9NS . . . N 5 34.154 -12.001 13.858 0.95 36.55 ? C8 9NS 1216 B 1 HETATM 9 C C9 9NS . . . N 5 31.995 -12.557 13.65 0.95 36.59 ? C9 9NS 1216 B 1 HETATM 10 C C10 9NS . . . N 5 36.124 -9.31 17.261 0.95 33.38 ? C10 9NS 1216 B 1 HETATM 11 C C11 9NS . . . N 5 32.618 -6.525 13.643 0.95 19.1 ? C11 9NS 1216 B 1 HETATM 12 C C12 9NS . . . N 5 36.455 -8.148 16.58 0.95 32.12 ? C12 9NS 1216 B 1 HETATM 13 C C13 9NS . . . N 5 33.289 -7.712 13.366 0.95 21.43 ? C13 9NS 1216 B 1 HETATM 14 C C14 9NS . . . N 5 31.641 -6.595 11.438 0.95 18.84 ? C14 9NS 1216 B 1 HETATM 15 C C15 9NS . . . N 5 31.784 -5.979 12.669 0.95 18.44 ? C15 9NS 1216 B 1 HETATM 16 C C16 9NS . . . N 5 33.649 -12.401 15.074 0.95 36.93 ? C16 9NS 1216 B 1 HETATM 17 C C17 9NS . . . N 5 38.093 -8.012 11.877 0.95 35.61 ? C17 9NS 1216 B 1 HETATM 18 C C18 9NS . . . N 5 37.385 -7.109 12.559 0.95 34.96 ? C18 9NS 1216 B 1 HETATM 19 C C19 9NS . . . N 5 35.913 -10.618 16.581 0.95 34.98 ? C19 9NS 1216 B 1 HETATM 20 C C20 9NS . . . N 5 32.755 -5.866 14.973 0.95 19.83 ? C20 9NS 1216 B 1 HETATM 21 C C21 9NS . . . N 5 30.941 -3.569 7.801 0.95 27.42 ? C21 9NS 1216 B 1 HETATM 22 C C22 9NS . . . N 5 30.088 -4.479 12.022 0.95 20.31 ? C22 9NS 1216 B 1 HETATM 23 C C23 9NS . . . N 5 30.594 -4.689 10.625 0.95 20.46 ? C23 9NS 1216 B 1 HETATM 24 C C24 9NS . . . N 5 36.654 -8.096 15.105 0.95 30.58 ? C24 9NS 1216 B 1 HETATM 25 C C25 9NS . . . N 5 34.225 -8.341 14.363 0.95 21.52 ? C25 9NS 1216 B 1 HETATM 26 C C26 9NS . . . N 5 34.277 -12.51 16.41 0.95 36.69 ? C26 9NS 1216 B 1 HETATM 27 C C27 9NS . . . N 5 35.942 -7.26 12.875 0.95 31.41 ? C27 9NS 1216 B 1 HETATM 28 C C28 9NS . . . N 5 29.885 -4.57 8.22 0.95 23.13 ? C28 9NS 1216 B 1 HETATM 29 C C29 9NS . . . N 5 29.558 -4.168 9.647 0.95 22.75 ? C29 9NS 1216 B 1 HETATM 30 N N30 9NS . . . N 5 34.69 -11.197 16.866 0.95 35.47 ? N30 9NS 1216 B 1 HETATM 31 N N31 9NS . . . N 5 35.52 -7.562 14.294 0.95 28.71 ? N31 9NS 1216 B 1 HETATM 32 O O32 9NS . . . N 5 31.657 -5.462 15.461 0.95 16.89 ? O32 9NS 1216 B 1 HETATM 33 O O33 9NS . . . N 5 31.863 -4.043 7.079 0.95 26.16 ? O33 9NS 1216 B 1 HETATM 34 O O34 9NS . . . N 5 36.758 -11.093 15.836 0.95 36.76 ? O34 9NS 1216 B 1 HETATM 35 O O35 9NS . . . N 5 33.869 -5.821 15.565 0.95 19.92 ? O35 9NS 1216 B 1 HETATM 36 O O36 9NS . . . N 5 30.769 -2.382 8.19 0.95 30.17 ? O36 9NS 1216 B 1 HETATM 37 O O37 9NS . . . N 5 32.33 -12.744 14.957 0.95 35.79 ? O37 9NS 1216 B 1 HETATM 38 O O38 9NS . . . N 5 31.133 -4.775 12.948 0.95 19.24 ? O38 9NS 1216 B 1 HETATM 39 O O39 9NS . . . N 5 30.835 -6.087 10.432 0.95 19.22 ? O39 9NS 1216 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #