data_4CEF # _model_server_result.job_id 3o-nwM-_IVfweis_stEu1g _model_server_result.datetime_utc '2024-11-08 04:10:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1215}' # _entry.id 4CEF # _exptl.entry_id 4CEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.558 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(3-hydroxy-3-oxopropyl)-6-[[methyl-[[2-[(phenylmethyl)carbamoyl]phenyl]methyl]amino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CEF _cell.length_a 70.565 _cell.length_b 70.565 _cell.length_c 66.612 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 N N N # _chem_comp.formula 'C29 H30 N2 O7' _chem_comp.formula_weight 518.558 _chem_comp.id D0T _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(3-hydroxy-3-oxopropyl)-6-[[methyl-[[2-[(phenylmethyl)carbamoyl]phenyl]methyl]amino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C15 D0T doub 83 n n C15 C27 D0T sing 84 n n C15 O2 D0T sing 85 n n C27 C29 D0T sing 86 n n C29 C23 D0T sing 87 n n O7 C23 D0T sing 88 n n O7 C11 D0T sing 89 n n C23 C21 D0T sing 90 n n C6 C11 D0T doub 91 n y C6 C5 D0T sing 92 n y C11 C12 D0T sing 93 n y C21 O6 D0T sing 94 n n C5 C10 D0T doub 95 n y C12 O6 D0T sing 96 n n C12 C8 D0T doub 97 n y C18 C16 D0T doub 98 n y C18 C20 D0T sing 99 n y C26 N2 D0T sing 100 n n C16 C17 D0T sing 101 n y C10 C8 D0T sing 102 n y C10 C25 D0T sing 103 n n C8 C14 D0T sing 104 n n C20 C22 D0T doub 105 n y N2 C25 D0T sing 106 n n N2 C24 D0T sing 107 n n C17 C19 D0T doub 108 n y C14 O1 D0T doub 109 n n C14 O4 D0T sing 110 n n C24 C9 D0T sing 111 n n C22 C19 D0T sing 112 n y C22 C28 D0T sing 113 n n O3 C13 D0T doub 114 n n C28 N1 D0T sing 115 n n C9 C4 D0T doub 116 n y C9 C7 D0T sing 117 n y C13 N1 D0T sing 118 n n C13 C7 D0T sing 119 n n C4 C2 D0T sing 120 n y C7 C3 D0T doub 121 n y C2 C1 D0T doub 122 n y C3 C1 D0T sing 123 n y C1 H1 D0T sing 124 n n C2 H2 D0T sing 125 n n C3 H3 D0T sing 126 n n C4 H4 D0T sing 127 n n C5 H5 D0T sing 128 n n C6 H6 D0T sing 129 n n C16 H7 D0T sing 130 n n C17 H8 D0T sing 131 n n C18 H9 D0T sing 132 n n C19 H10 D0T sing 133 n n C20 H11 D0T sing 134 n n C21 H12 D0T sing 135 n n C21 H13 D0T sing 136 n n C23 H14 D0T sing 137 n n C24 H15 D0T sing 138 n n C24 H16 D0T sing 139 n n C25 H17 D0T sing 140 n n C25 H18 D0T sing 141 n n C26 H19 D0T sing 142 n n C26 H20 D0T sing 143 n n C26 H21 D0T sing 144 n n C27 H22 D0T sing 145 n n C27 H23 D0T sing 146 n n C28 H24 D0T sing 147 n n C28 H25 D0T sing 148 n n C29 H26 D0T sing 149 n n C29 H27 D0T sing 150 n n N1 H28 D0T sing 151 n n O2 H30 D0T sing 152 n n O4 H31 D0T sing 153 n n # _atom_sites.entry_id 4CEF _atom_sites.fract_transf_matrix[1][1] 0.014171 _atom_sites.fract_transf_matrix[1][2] 0.008182 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 CL A 1 1213 1213 CL CL . G 4 GOL A 1 1214 1214 GOL GOL . H 5 D0T A 1 1215 1215 D0T D0T . I 2 SO4 B 1 1210 1210 SO4 SO4 . J 2 SO4 B 1 1211 1211 SO4 SO4 . K 2 SO4 B 1 1212 1212 SO4 SO4 . L 3 CL B 1 1213 1213 CL CL . M 4 GOL B 1 1214 1214 GOL GOL . N 5 D0T B 1 1215 1215 D0T D0T . O 6 HOH A 1 2001 2001 HOH HOH . O 6 HOH A 2 2002 2002 HOH HOH . O 6 HOH A 3 2003 2003 HOH HOH . O 6 HOH A 4 2004 2004 HOH HOH . O 6 HOH A 5 2005 2005 HOH HOH . O 6 HOH A 6 2006 2006 HOH HOH . O 6 HOH A 7 2007 2007 HOH HOH . O 6 HOH A 8 2008 2008 HOH HOH . O 6 HOH A 9 2009 2009 HOH HOH . O 6 HOH A 10 2010 2010 HOH HOH . O 6 HOH A 11 2011 2011 HOH HOH . O 6 HOH A 12 2012 2012 HOH HOH . O 6 HOH A 13 2013 2013 HOH HOH . O 6 HOH A 14 2014 2014 HOH HOH . O 6 HOH A 15 2015 2015 HOH HOH . O 6 HOH A 16 2016 2016 HOH HOH . O 6 HOH A 17 2017 2017 HOH HOH . O 6 HOH A 18 2018 2018 HOH HOH . O 6 HOH A 19 2019 2019 HOH HOH . O 6 HOH A 20 2020 2020 HOH HOH . O 6 HOH A 21 2021 2021 HOH HOH . O 6 HOH A 22 2022 2022 HOH HOH . O 6 HOH A 23 2023 2023 HOH HOH . O 6 HOH A 24 2024 2024 HOH HOH . O 6 HOH A 25 2025 2025 HOH HOH . O 6 HOH A 26 2026 2026 HOH HOH . O 6 HOH A 27 2027 2027 HOH HOH . O 6 HOH A 28 2028 2028 HOH HOH . O 6 HOH A 29 2029 2029 HOH HOH . O 6 HOH A 30 2030 2030 HOH HOH . O 6 HOH A 31 2031 2031 HOH HOH . O 6 HOH A 32 2032 2032 HOH HOH . O 6 HOH A 33 2033 2033 HOH HOH . O 6 HOH A 34 2034 2034 HOH HOH . O 6 HOH A 35 2035 2035 HOH HOH . O 6 HOH A 36 2036 2036 HOH HOH . O 6 HOH A 37 2037 2037 HOH HOH . O 6 HOH A 38 2038 2038 HOH HOH . O 6 HOH A 39 2039 2039 HOH HOH . O 6 HOH A 40 2040 2040 HOH HOH . O 6 HOH A 41 2041 2041 HOH HOH . O 6 HOH A 42 2042 2042 HOH HOH . O 6 HOH A 43 2043 2043 HOH HOH . O 6 HOH A 44 2044 2044 HOH HOH . O 6 HOH A 45 2045 2045 HOH HOH . O 6 HOH A 46 2046 2046 HOH HOH . O 6 HOH A 47 2047 2047 HOH HOH . O 6 HOH A 48 2048 2048 HOH HOH . O 6 HOH A 49 2049 2049 HOH HOH . O 6 HOH A 50 2050 2050 HOH HOH . O 6 HOH A 51 2051 2051 HOH HOH . O 6 HOH A 52 2052 2052 HOH HOH . O 6 HOH A 53 2053 2053 HOH HOH . O 6 HOH A 54 2054 2054 HOH HOH . O 6 HOH A 55 2055 2055 HOH HOH . O 6 HOH A 56 2056 2056 HOH HOH . O 6 HOH A 57 2057 2057 HOH HOH . O 6 HOH A 58 2058 2058 HOH HOH . O 6 HOH A 59 2059 2059 HOH HOH . O 6 HOH A 60 2060 2060 HOH HOH . O 6 HOH A 61 2061 2061 HOH HOH . O 6 HOH A 62 2062 2062 HOH HOH . O 6 HOH A 63 2063 2063 HOH HOH . O 6 HOH A 64 2064 2064 HOH HOH . O 6 HOH A 65 2065 2065 HOH HOH . O 6 HOH A 66 2066 2066 HOH HOH . O 6 HOH A 67 2067 2067 HOH HOH . O 6 HOH A 68 2068 2068 HOH HOH . O 6 HOH A 69 2069 2069 HOH HOH . O 6 HOH A 70 2070 2070 HOH HOH . O 6 HOH A 71 2071 2071 HOH HOH . O 6 HOH A 72 2072 2072 HOH HOH . O 6 HOH A 73 2073 2073 HOH HOH . O 6 HOH A 74 2074 2074 HOH HOH . O 6 HOH A 75 2075 2075 HOH HOH . O 6 HOH A 76 2076 2076 HOH HOH . O 6 HOH A 77 2077 2077 HOH HOH . O 6 HOH A 78 2078 2078 HOH HOH . O 6 HOH A 79 2079 2079 HOH HOH . O 6 HOH A 80 2080 2080 HOH HOH . O 6 HOH A 81 2081 2081 HOH HOH . O 6 HOH A 82 2082 2082 HOH HOH . O 6 HOH A 83 2083 2083 HOH HOH . O 6 HOH A 84 2084 2084 HOH HOH . O 6 HOH A 85 2085 2085 HOH HOH . O 6 HOH A 86 2086 2086 HOH HOH . O 6 HOH A 87 2087 2087 HOH HOH . O 6 HOH A 88 2088 2088 HOH HOH . O 6 HOH A 89 2089 2089 HOH HOH . O 6 HOH A 90 2090 2090 HOH HOH . O 6 HOH A 91 2091 2091 HOH HOH . P 6 HOH B 1 2001 2001 HOH HOH . P 6 HOH B 2 2002 2002 HOH HOH . P 6 HOH B 3 2003 2003 HOH HOH . P 6 HOH B 4 2004 2004 HOH HOH . P 6 HOH B 5 2005 2005 HOH HOH . P 6 HOH B 6 2006 2006 HOH HOH . P 6 HOH B 7 2007 2007 HOH HOH . P 6 HOH B 8 2008 2008 HOH HOH . P 6 HOH B 9 2009 2009 HOH HOH . P 6 HOH B 10 2010 2010 HOH HOH . P 6 HOH B 11 2011 2011 HOH HOH . P 6 HOH B 12 2012 2012 HOH HOH . P 6 HOH B 13 2013 2013 HOH HOH . P 6 HOH B 14 2014 2014 HOH HOH . P 6 HOH B 15 2015 2015 HOH HOH . P 6 HOH B 16 2016 2016 HOH HOH . P 6 HOH B 17 2017 2017 HOH HOH . P 6 HOH B 18 2018 2018 HOH HOH . P 6 HOH B 19 2019 2019 HOH HOH . P 6 HOH B 20 2020 2020 HOH HOH . P 6 HOH B 21 2021 2021 HOH HOH . P 6 HOH B 22 2022 2022 HOH HOH . P 6 HOH B 23 2023 2023 HOH HOH . P 6 HOH B 24 2024 2024 HOH HOH . P 6 HOH B 25 2025 2025 HOH HOH . P 6 HOH B 26 2026 2026 HOH HOH . P 6 HOH B 27 2027 2027 HOH HOH . P 6 HOH B 28 2028 2028 HOH HOH . P 6 HOH B 29 2029 2029 HOH HOH . P 6 HOH B 30 2030 2030 HOH HOH . P 6 HOH B 31 2031 2031 HOH HOH . P 6 HOH B 32 2032 2032 HOH HOH . P 6 HOH B 33 2033 2033 HOH HOH . P 6 HOH B 34 2034 2034 HOH HOH . P 6 HOH B 35 2035 2035 HOH HOH . P 6 HOH B 36 2036 2036 HOH HOH . P 6 HOH B 37 2037 2037 HOH HOH . P 6 HOH B 38 2038 2038 HOH HOH . P 6 HOH B 39 2039 2039 HOH HOH . P 6 HOH B 40 2040 2040 HOH HOH . P 6 HOH B 41 2041 2041 HOH HOH . P 6 HOH B 42 2042 2042 HOH HOH . P 6 HOH B 43 2043 2043 HOH HOH . P 6 HOH B 44 2044 2044 HOH HOH . P 6 HOH B 45 2045 2045 HOH HOH . P 6 HOH B 46 2046 2046 HOH HOH . P 6 HOH B 47 2047 2047 HOH HOH . P 6 HOH B 48 2048 2048 HOH HOH . P 6 HOH B 49 2049 2049 HOH HOH . P 6 HOH B 50 2050 2050 HOH HOH . P 6 HOH B 51 2051 2051 HOH HOH . P 6 HOH B 52 2052 2052 HOH HOH . P 6 HOH B 53 2053 2053 HOH HOH . P 6 HOH B 54 2054 2054 HOH HOH . P 6 HOH B 55 2055 2055 HOH HOH . P 6 HOH B 56 2056 2056 HOH HOH . P 6 HOH B 57 2057 2057 HOH HOH . P 6 HOH B 58 2058 2058 HOH HOH . P 6 HOH B 59 2059 2059 HOH HOH . P 6 HOH B 60 2060 2060 HOH HOH . P 6 HOH B 61 2061 2061 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D0T . . . H 5 -10.277 47.669 5.215 1 29.84 ? C1 D0T 1215 A 1 HETATM 2 C C2 D0T . . . H 5 -11.145 48.466 4.495 1 29.64 ? C2 D0T 1215 A 1 HETATM 3 C C3 D0T . . . H 5 -9.271 46.971 4.575 1 30.31 ? C3 D0T 1215 A 1 HETATM 4 C C4 D0T . . . H 5 -11.008 48.552 3.123 1 29.12 ? C4 D0T 1215 A 1 HETATM 5 C C5 D0T . . . H 5 -11.508 44.79 -1.982 1 19.24 ? C5 D0T 1215 A 1 HETATM 6 C C6 D0T . . . H 5 -12.397 44.356 -2.951 1 18.54 ? C6 D0T 1215 A 1 HETATM 7 C C7 D0T . . . H 5 -9.139 47.064 3.201 1 29.57 ? C7 D0T 1215 A 1 HETATM 8 C C8 D0T . . . H 5 -13.34 45.293 -0.526 1 18.32 ? C8 D0T 1215 A 1 HETATM 9 C C9 D0T . . . H 5 -10.009 47.852 2.473 1 29.22 ? C9 D0T 1215 A 1 HETATM 10 C C10 D0T . . . H 5 -11.97 45.259 -0.766 1 20.96 ? C10 D0T 1215 A 1 HETATM 11 C C11 D0T . . . H 5 -13.75 44.407 -2.724 1 18.05 ? C11 D0T 1215 A 1 HETATM 12 C C12 D0T . . . H 5 -14.226 44.857 -1.508 1 18.14 ? C12 D0T 1215 A 1 HETATM 13 C C13 D0T . . . H 5 -8.063 46.308 2.52 1 30.81 ? C13 D0T 1215 A 1 HETATM 14 C C14 D0T . . . H 5 -13.871 45.767 0.788 1 20.2 ? C14 D0T 1215 A 1 HETATM 15 C C15 D0T . . . H 5 -16.729 45.386 -6.339 1 28.83 ? C15 D0T 1215 A 1 HETATM 16 C C16 D0T . . . H 5 -8.533 41.873 -1.022 1 28.02 ? C16 D0T 1215 A 1 HETATM 17 C C17 D0T . . . H 5 -8.437 41.294 0.225 1 27.97 ? C17 D0T 1215 A 1 HETATM 18 C C18 D0T . . . H 5 -8.13 43.177 -1.22 1 28.28 ? C18 D0T 1215 A 1 HETATM 19 C C19 D0T . . . H 5 -7.932 42.036 1.267 1 27.61 ? C19 D0T 1215 A 1 HETATM 20 C C20 D0T . . . H 5 -7.633 43.916 -0.168 1 27.38 ? C20 D0T 1215 A 1 HETATM 21 C C21 D0T . . . H 5 -16.376 44.162 -2.177 1 20.38 ? C21 D0T 1215 A 1 HETATM 22 C C22 D0T . . . H 5 -7.533 43.34 1.083 1 28.04 ? C22 D0T 1215 A 1 HETATM 23 C C23 D0T . . . H 5 -15.913 44.463 -3.569 1 19.61 ? C23 D0T 1215 A 1 HETATM 24 C C24 D0T . . . H 5 -9.889 47.966 0.993 1 29.22 ? C24 D0T 1215 A 1 HETATM 25 C C25 D0T . . . H 5 -10.94 45.735 0.226 1 21.16 ? C25 D0T 1215 A 1 HETATM 26 C C26 D0T . . . H 5 -11.003 47.931 -1.125 1 27.61 ? C26 D0T 1215 A 1 HETATM 27 C C27 D0T . . . H 5 -16.416 43.94 -5.988 1 24.42 ? C27 D0T 1215 A 1 HETATM 28 C C28 D0T . . . H 5 -6.999 44.117 2.241 1 29.02 ? C28 D0T 1215 A 1 HETATM 29 C C29 D0T . . . H 5 -16.859 43.776 -4.543 1 22.17 ? C29 D0T 1215 A 1 HETATM 30 N N1 D0T . . . H 5 -8.024 44.966 2.801 1 29.03 ? N1 D0T 1215 A 1 HETATM 31 N N2 D0T . . . H 5 -10.939 47.255 0.212 1 26.89 ? N2 D0T 1215 A 1 HETATM 32 O O1 D0T . . . H 5 -14.784 45.044 1.288 1 18.13 ? O1 D0T 1215 A 1 HETATM 33 O O2 D0T . . . H 5 -17.831 45.856 -5.938 1 31.85 ? O2 D0T 1215 A 1 HETATM 34 O O3 D0T . . . H 5 -7.29 46.872 1.756 1 32.38 ? O3 D0T 1215 A 1 HETATM 35 O O4 D0T . . . H 5 -13.355 46.76 1.36 1 20.3 ? O4 D0T 1215 A 1 HETATM 36 O O5 D0T . . . H 5 -15.839 45.961 -7.026 1 28.74 ? O5 D0T 1215 A 1 HETATM 37 O O6 D0T . . . H 5 -15.594 44.921 -1.256 1 19.05 ? O6 D0T 1215 A 1 HETATM 38 O O7 D0T . . . H 5 -14.58 43.971 -3.743 1 19.14 ? O7 D0T 1215 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 38 #