data_4CEY # _model_server_result.job_id 38X9gLfAg_OW8S6UCBNWWQ _model_server_result.datetime_utc '2025-03-04 05:56:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1244}' # _entry.id 4CEY # _exptl.entry_id 4CEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CEY _cell.length_a 600.36 _cell.length_b 600.36 _cell.length_c 600.36 _cell.Z_PDB 480 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-MERIC 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 (1-60) A,B,C,D,E,F,G,H,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 (1-5) A,B,C,D,E,F,G,H,I,J 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I,J 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.103398 -0.115485 -0.987913 -0.987913 0.103398 -0.115485 0.115485 0.987913 -0.103398 146.41093 146.41093 -146.41093 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.431569 -0.118973 0.8942 -0.401759 0.862176 0.308614 -0.807675 -0.492441 0.32429 -30.27713 33.81645 289.28254 3 'point symmetry operation' ? ? -0.488173 -0.594262 0.639172 -0.769033 0.639172 0.006907 -0.412645 -0.488173 -0.769033 211.30944 164.41287 390.89528 4 'point symmetry operation' ? ? -0.488173 -0.769033 -0.412645 -0.594262 0.639172 -0.488173 0.639172 0.006907 -0.769033 390.89528 211.30944 164.41287 5 'point symmetry operation' ? ? 0.431569 -0.401759 -0.807675 -0.118973 0.862176 -0.492441 0.8942 0.308614 0.324289 260.29886 109.6967 -77.1737 6 'point symmetry operation' ? ? -0.973327 0.228178 -0.023882 0.228178 0.951944 -0.204296 -0.023882 -0.204296 -0.978618 259.00541 3.53933 323.09899 7 'point symmetry operation' ? ? -0.492441 0.32429 -0.807675 -0.118973 0.8942 0.431569 0.862176 0.308614 -0.401759 289.28254 -30.27713 33.81645 8 'point symmetry operation' ? ? 0.30953 0.735914 -0.602181 -0.759165 0.57259 0.30953 0.57259 0.361346 0.735914 81.51242 128.40899 -98.07341 9 'point symmetry operation' ? ? 0.324289 0.8942 0.308614 -0.807675 0.431569 -0.401759 -0.492441 -0.118973 0.862176 -77.1737 260.29886 109.6967 10 'point symmetry operation' ? ? -0.468559 0.580402 0.666022 -0.197463 0.666022 -0.719321 -0.861081 -0.468559 -0.197463 32.523 183.12516 369.99556 11 'point symmetry operation' ? ? 0.951944 -0.204296 0.228178 -0.204296 -0.978618 -0.023882 0.228178 -0.023882 -0.973327 3.53933 323.09899 259.00541 12 'point symmetry operation' ? ? 0.308614 -0.401759 0.862176 0.32429 -0.807675 -0.492441 0.8942 0.431569 -0.118973 33.81645 289.28254 -30.27713 13 'point symmetry operation' ? ? -0.401759 -0.807675 0.431569 0.862176 -0.492441 -0.118973 0.308614 0.324289 0.8942 260.29886 109.6967 -77.1737 14 'point symmetry operation' ? ? -0.197463 -0.861081 -0.468559 0.666022 -0.468559 0.580402 -0.719321 -0.197463 0.666022 369.99556 32.523 183.12516 15 'point symmetry operation' ? ? 0.639172 -0.488173 -0.594262 0.006907 -0.769033 0.639172 -0.769033 -0.412645 -0.488173 211.30944 164.41287 390.89528 16 'point symmetry operation' ? ? -0.978618 -0.023882 -0.204296 -0.023882 -0.973327 0.228178 -0.204296 0.228178 0.951944 323.09899 259.00541 3.53933 17 'point symmetry operation' ? ? -0.247741 0.196443 -0.948701 0.196443 -0.948701 -0.247741 -0.948701 -0.247741 0.196443 292.82186 292.82186 292.82186 18 'point symmetry operation' ? ? 0.580402 0.666022 -0.468559 0.666022 -0.719321 -0.197463 -0.468559 -0.197463 -0.861081 32.523 183.12516 369.99556 19 'point symmetry operation' ? ? 0.361346 0.735914 0.57259 0.735914 -0.602181 0.30953 0.57259 0.30953 -0.759165 -98.07341 81.51242 128.40899 20 'point symmetry operation' ? ? -0.602181 0.30953 0.735914 0.30953 -0.759165 0.57259 0.735914 0.57259 0.361346 81.51242 128.40899 -98.07341 21 'point symmetry operation' ? ? -0.204296 0.228178 0.951944 -0.978618 -0.023882 -0.204296 -0.023882 -0.973327 0.228178 3.53933 323.09899 259.00541 22 'point symmetry operation' ? ? -0.948701 -0.247741 0.196443 -0.247741 0.196443 -0.948701 0.196443 -0.948701 -0.247741 292.82186 292.82186 292.82186 23 'point symmetry operation' ? ? -0.468559 -0.197463 -0.861081 0.580402 0.666022 -0.468559 0.666022 -0.719321 -0.197463 369.99556 32.523 183.12516 24 'point symmetry operation' ? ? 0.57259 0.30953 -0.759165 0.361346 0.735914 0.57259 0.735914 -0.602181 0.30953 128.40899 -98.07341 81.51242 25 'point symmetry operation' ? ? 0.735914 0.57259 0.361346 -0.602181 0.30953 0.735914 0.30953 -0.759165 0.57259 -98.07341 81.51242 128.40899 26 'point symmetry operation' ? ? 0.228178 -0.023882 -0.973327 0.951944 -0.204296 0.228178 -0.204296 -0.978618 -0.023882 259.00541 3.53933 323.09899 27 'point symmetry operation' ? ? 0.8942 0.431569 -0.118973 0.308614 -0.401759 0.862176 0.32429 -0.807675 -0.492441 -30.27713 33.81645 289.28254 28 'point symmetry operation' ? ? 0.308614 0.324289 0.8942 -0.401759 -0.807675 0.431569 0.862176 -0.492441 -0.118973 -77.1737 260.29886 109.6967 29 'point symmetry operation' ? ? -0.719321 -0.197463 0.666022 -0.197463 -0.861081 -0.468559 0.666022 -0.468559 0.580402 183.12516 369.99556 32.523 30 'point symmetry operation' ? ? -0.769033 -0.412645 -0.488173 0.639172 -0.488173 -0.594262 0.006907 -0.769033 0.639172 390.89528 211.30944 164.41287 31 'point symmetry operation' ? ? -0.023882 -0.204296 -0.978618 -0.973327 0.228178 -0.023882 0.228178 0.951944 -0.204296 323.09899 259.00541 3.53933 32 'point symmetry operation' ? ? 0.862176 0.308614 -0.401759 -0.492441 0.32429 -0.807675 -0.118973 0.8942 0.431569 33.81645 289.28254 -30.27713 33 'point symmetry operation' ? ? 0.57259 0.361346 0.735914 0.30953 0.735914 -0.602181 -0.759165 0.57259 0.30953 -98.07341 81.51242 128.40899 34 'point symmetry operation' ? ? -0.492441 -0.118973 0.862176 0.324289 0.8942 0.308614 -0.807675 0.431569 -0.401759 109.6967 -77.1737 260.29886 35 'point symmetry operation' ? ? -0.861081 -0.468559 -0.197463 -0.468559 0.580402 0.666022 -0.197463 0.666022 -0.719321 369.99556 32.523 183.12516 36 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 37 'point symmetry operation' ? ? -0.807675 -0.492441 0.32429 0.431569 -0.118973 0.8942 -0.401759 0.862176 0.308614 289.28254 -30.27713 33.81645 38 'point symmetry operation' ? ? -0.412645 -0.488173 -0.769033 -0.488173 -0.594262 0.639172 -0.769033 0.639172 0.006907 390.89528 211.30944 164.41287 39 'point symmetry operation' ? ? 0.639172 0.006907 -0.769033 -0.488173 -0.769033 -0.412645 -0.594262 0.639172 -0.488173 164.41287 390.89528 211.30944 40 'point symmetry operation' ? ? 0.8942 0.308614 0.324289 0.431569 -0.401759 -0.807675 -0.118973 0.862176 -0.492441 -77.1737 260.29886 109.6967 41 'point symmetry operation' ? ? -0.204296 -0.978618 -0.023882 0.228178 -0.023882 -0.973327 0.951944 -0.204296 0.228178 323.09899 259.00541 3.53933 42 'point symmetry operation' ? ? 0.32429 -0.807675 -0.492441 0.8942 0.431569 -0.118973 0.308614 -0.401759 0.862176 289.28254 -30.27713 33.81645 43 'point symmetry operation' ? ? 0.862176 -0.492441 -0.118973 0.308614 0.324289 0.8942 -0.401759 -0.807675 0.431569 109.6967 -77.1737 260.29886 44 'point symmetry operation' ? ? 0.666022 -0.468559 0.580402 -0.719321 -0.197463 0.666022 -0.197463 -0.861081 -0.468559 32.523 183.12516 369.99556 45 'point symmetry operation' ? ? 0.006907 -0.769033 0.639172 -0.769033 -0.412645 -0.488173 0.639172 -0.488173 -0.594262 164.41287 390.89528 211.30944 46 'point symmetry operation' ? ? -0.023882 -0.973327 0.228178 -0.204296 0.228178 0.951944 -0.978618 -0.023882 -0.204296 259.00541 3.53933 323.09899 47 'point symmetry operation' ? ? 0.196443 -0.948701 -0.247741 -0.948701 -0.247741 0.196443 -0.247741 0.196443 -0.948701 292.82186 292.82186 292.82186 48 'point symmetry operation' ? ? 0.666022 -0.719321 -0.197463 -0.468559 -0.197463 -0.861081 0.580402 0.666022 -0.468559 183.12516 369.99556 32.523 49 'point symmetry operation' ? ? 0.735914 -0.602181 0.30953 0.57259 0.30953 -0.759165 0.361346 0.735914 0.57259 81.51242 128.40899 -98.07341 50 'point symmetry operation' ? ? 0.30953 -0.759165 0.57259 0.735914 0.57259 0.361346 -0.602181 0.30953 0.735914 128.40899 -98.07341 81.51242 51 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 52 'point symmetry operation' ? ? -0.401759 0.862176 0.308614 -0.807675 -0.492441 0.32429 0.431569 -0.118973 0.8942 33.81645 289.28254 -30.27713 53 'point symmetry operation' ? ? -0.769033 0.639172 0.006907 -0.412645 -0.488173 -0.769033 -0.488173 -0.594262 0.639172 164.41287 390.89528 211.30944 54 'point symmetry operation' ? ? -0.594262 0.639172 -0.488173 0.639172 0.006907 -0.769033 -0.488173 -0.769033 -0.412645 211.30944 164.41287 390.89528 55 'point symmetry operation' ? ? -0.118973 0.862176 -0.492441 0.8942 0.308614 0.324289 0.431569 -0.401759 -0.807675 109.6967 -77.1737 260.29886 56 'point symmetry operation' ? ? 0.228178 0.951944 -0.204296 -0.023882 -0.204296 -0.978618 -0.973327 0.228178 -0.023882 3.53933 323.09899 259.00541 57 'point symmetry operation' ? ? -0.118973 0.8942 0.431569 0.862176 0.308614 -0.401759 -0.492441 0.32429 -0.807675 -30.27713 33.81645 289.28254 58 'point symmetry operation' ? ? -0.759165 0.57259 0.30953 0.57259 0.361346 0.735914 0.30953 0.735914 -0.602181 128.40899 -98.07341 81.51242 59 'point symmetry operation' ? ? -0.807675 0.431569 -0.401759 -0.492441 -0.118973 0.862176 0.324289 0.8942 0.308614 260.29886 109.6967 -77.1737 60 'point symmetry operation' ? ? -0.197463 0.666022 -0.719321 -0.861081 -0.468559 -0.197463 -0.468559 0.580402 0.666022 183.12516 369.99556 32.523 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 189 A GLN 189 1_555 F NA NA . C NA 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 C O VAL 20 C VAL 20 1_555 F NA NA . C NA 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc3 C OG SER 21 C SER 21 1_555 F NA NA . C NA 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4CEY _atom_sites.fract_transf_matrix[1][1] 0.001666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.001666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 906 A 1 1298 1298 906 906 . F 6 NA C 1 1243 1243 NA NA . G 6 NA C 1 1244 1244 NA NA . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH A 12 2012 2012 HOH HOH . H 7 HOH A 13 2013 2013 HOH HOH . H 7 HOH A 14 2014 2014 HOH HOH . H 7 HOH A 15 2015 2015 HOH HOH . H 7 HOH A 16 2016 2016 HOH HOH . H 7 HOH A 17 2017 2017 HOH HOH . H 7 HOH A 18 2018 2018 HOH HOH . H 7 HOH A 19 2019 2019 HOH HOH . H 7 HOH A 20 2020 2020 HOH HOH . H 7 HOH A 21 2021 2021 HOH HOH . H 7 HOH A 22 2022 2022 HOH HOH . H 7 HOH A 23 2023 2023 HOH HOH . H 7 HOH A 24 2024 2024 HOH HOH . H 7 HOH A 25 2025 2025 HOH HOH . H 7 HOH A 26 2026 2026 HOH HOH . H 7 HOH A 27 2027 2027 HOH HOH . H 7 HOH A 28 2028 2028 HOH HOH . H 7 HOH A 29 2029 2029 HOH HOH . I 7 HOH B 1 2001 2001 HOH HOH . I 7 HOH B 2 2002 2002 HOH HOH . I 7 HOH B 3 2003 2003 HOH HOH . I 7 HOH B 4 2004 2004 HOH HOH . I 7 HOH B 5 2005 2005 HOH HOH . I 7 HOH B 6 2006 2006 HOH HOH . I 7 HOH B 7 2007 2007 HOH HOH . I 7 HOH B 8 2008 2008 HOH HOH . I 7 HOH B 9 2009 2009 HOH HOH . I 7 HOH B 10 2010 2010 HOH HOH . I 7 HOH B 11 2011 2011 HOH HOH . I 7 HOH B 12 2012 2012 HOH HOH . I 7 HOH B 13 2013 2013 HOH HOH . I 7 HOH B 14 2014 2014 HOH HOH . I 7 HOH B 15 2015 2015 HOH HOH . I 7 HOH B 16 2016 2016 HOH HOH . I 7 HOH B 17 2017 2017 HOH HOH . J 7 HOH C 1 2001 2001 HOH HOH . J 7 HOH C 2 2002 2002 HOH HOH . J 7 HOH C 3 2003 2003 HOH HOH . J 7 HOH C 4 2004 2004 HOH HOH . J 7 HOH C 5 2005 2005 HOH HOH . J 7 HOH C 6 2006 2006 HOH HOH . J 7 HOH C 7 2007 2007 HOH HOH . J 7 HOH C 8 2008 2008 HOH HOH . J 7 HOH C 9 2009 2009 HOH HOH . J 7 HOH C 10 2010 2010 HOH HOH . J 7 HOH C 11 2011 2011 HOH HOH . J 7 HOH C 12 2012 2012 HOH HOH . J 7 HOH C 13 2013 2013 HOH HOH . J 7 HOH C 14 2014 2014 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 140.436 _atom_site.Cartn_y 277.567 _atom_site.Cartn_z 131.67 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1244 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #