data_4CF0
#
_model_server_result.job_id            RRb53AkH2X4i5PGYd8WhCg 
_model_server_result.datetime_utc      '2024-11-22 05:14:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cf0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1213}' 
#
_entry.id    4CF0 
#
_exptl.entry_id    4CF0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.579 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-6-[[(1R,2S)-2-(6-azanylhexanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CF0 
_cell.length_a            71.364 
_cell.length_b            71.364 
_cell.length_c            66.601 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CF0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 L N N 
#
_chem_comp.formula           'C28 H34 N2 O7' 
_chem_comp.formula_weight    510.579 
_chem_comp.id                O5U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-6-[[(1R,2S)-2-(6-azanylhexanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 O5U sing 243 n y 
C1 C3 O5U doub 244 n y 
C2 C4 O5U doub 245 n y 
C3 C8 O5U sing 246 n y 
C4 C9 O5U sing 247 n y 
C5 C6 O5U sing 248 n y 
C5 C10 O5U doub 249 n y 
C6 C11 O5U doub 250 n y 
C7 C10 O5U sing 251 n y 
C7 C12 O5U doub 252 n y 
C7 C13 O5U sing 253 n n 
C8 C9 O5U doub 254 n y 
C8 C16 O5U sing 255 n n 
C9 C18 O5U sing 256 n n 
C10 C21 O5U sing 257 n n 
C11 C12 O5U sing 258 n y 
C11 O37 O5U sing 259 n n 
C12 O36 O5U sing 260 n n 
C13 O31 O5U sing 261 n n 
C13 O33 O5U doub 262 n n 
C14 C22 O5U sing 263 n n 
C14 N29 O5U sing 264 n n 
C14 O34 O5U doub 265 n n 
C15 C23 O5U sing 266 n n 
C15 O32 O5U sing 267 n n 
C15 O35 O5U doub 268 n n 
C16 C19 O5U sing 269 n n 
C17 C20 O5U sing 270 n n 
C17 O36 O5U sing 271 n n 
C18 C19 O5U sing 272 n n 
C18 C21 O5U sing 273 n n 
C19 N29 O5U sing 274 n n 
C20 C24 O5U sing 275 n n 
C20 O37 O5U sing 276 n n 
C22 C25 O5U sing 277 n n 
C23 C24 O5U sing 278 n n 
C25 C26 O5U sing 279 n n 
C26 C27 O5U sing 280 n n 
C27 C28 O5U sing 281 n n 
C28 N30 O5U sing 282 n n 
C1 H1 O5U sing 283 n n 
C2 H2 O5U sing 284 n n 
C3 H3 O5U sing 285 n n 
C4 H4 O5U sing 286 n n 
C5 H5 O5U sing 287 n n 
C6 H6 O5U sing 288 n n 
C16 H161 O5U sing 289 n n 
C16 H162 O5U sing 290 n n 
C18 H18 O5U sing 291 n n 
C21 H211 O5U sing 292 n n 
C21 H212 O5U sing 293 n n 
O31 H31 O5U sing 294 n n 
C22 H221 O5U sing 295 n n 
C22 H222 O5U sing 296 n n 
N29 H29 O5U sing 297 n n 
C23 H231 O5U sing 298 n n 
C23 H232 O5U sing 299 n n 
O32 H32 O5U sing 300 n n 
C19 H19 O5U sing 301 n n 
C17 H171 O5U sing 302 n n 
C17 H172 O5U sing 303 n n 
C20 H20 O5U sing 304 n n 
C24 H241 O5U sing 305 n n 
C24 H242 O5U sing 306 n n 
C25 H251 O5U sing 307 n n 
C25 H252 O5U sing 308 n n 
C26 H261 O5U sing 309 n n 
C26 H262 O5U sing 310 n n 
C27 H271 O5U sing 311 n n 
C27 H272 O5U sing 312 n n 
C28 H281 O5U sing 313 n n 
C28 H282 O5U sing 314 n n 
N30 H301 O5U sing 315 n n 
N30 H302 O5U sing 316 n n 
#
_atom_sites.entry_id                     4CF0 
_atom_sites.fract_transf_matrix[1][1]    0.014013 
_atom_sites.fract_transf_matrix[1][2]    0.00809 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1210 1210 SO4 SO4 . 
D 2 SO4 A 1 1211 1211 SO4 SO4 . 
E 2 SO4 A 1 1212 1212 SO4 SO4 . 
F 3 O5U A 1 1213 1213 O5U O5U . 
G 2 SO4 B 1 1210 1210 SO4 SO4 . 
H 2 SO4 B 1 1211 1211 SO4 SO4 . 
I 2 SO4 B 1 1212 1212 SO4 SO4 . 
J 4 ACT B 1 1213 1213 ACT ACT . 
K 4 ACT B 1 1214 1214 ACT ACT . 
L 3 O5U B 1 1215 1215 O5U O5U . 
M 5 HOH A 1 2001 2001 HOH HOH . 
M 5 HOH A 2 2002 2002 HOH HOH . 
M 5 HOH A 3 2003 2003 HOH HOH . 
M 5 HOH A 4 2004 2004 HOH HOH . 
M 5 HOH A 5 2005 2005 HOH HOH . 
M 5 HOH A 6 2006 2006 HOH HOH . 
M 5 HOH A 7 2007 2007 HOH HOH . 
M 5 HOH A 8 2008 2008 HOH HOH . 
M 5 HOH A 9 2009 2009 HOH HOH . 
M 5 HOH A 10 2010 2010 HOH HOH . 
M 5 HOH A 11 2011 2011 HOH HOH . 
M 5 HOH A 12 2012 2012 HOH HOH . 
M 5 HOH A 13 2013 2013 HOH HOH . 
M 5 HOH A 14 2014 2014 HOH HOH . 
M 5 HOH A 15 2015 2015 HOH HOH . 
M 5 HOH A 16 2016 2016 HOH HOH . 
M 5 HOH A 17 2017 2017 HOH HOH . 
M 5 HOH A 18 2018 2018 HOH HOH . 
M 5 HOH A 19 2019 2019 HOH HOH . 
M 5 HOH A 20 2020 2020 HOH HOH . 
M 5 HOH A 21 2021 2021 HOH HOH . 
M 5 HOH A 22 2022 2022 HOH HOH . 
M 5 HOH A 23 2023 2023 HOH HOH . 
M 5 HOH A 24 2024 2024 HOH HOH . 
M 5 HOH A 25 2025 2025 HOH HOH . 
M 5 HOH A 26 2026 2026 HOH HOH . 
M 5 HOH A 27 2027 2027 HOH HOH . 
M 5 HOH A 28 2028 2028 HOH HOH . 
M 5 HOH A 29 2029 2029 HOH HOH . 
M 5 HOH A 30 2030 2030 HOH HOH . 
M 5 HOH A 31 2031 2031 HOH HOH . 
M 5 HOH A 32 2032 2032 HOH HOH . 
M 5 HOH A 33 2033 2033 HOH HOH . 
M 5 HOH A 34 2034 2034 HOH HOH . 
M 5 HOH A 35 2035 2035 HOH HOH . 
M 5 HOH A 36 2036 2036 HOH HOH . 
M 5 HOH A 37 2037 2037 HOH HOH . 
M 5 HOH A 38 2038 2038 HOH HOH . 
M 5 HOH A 39 2039 2039 HOH HOH . 
M 5 HOH A 40 2040 2040 HOH HOH . 
M 5 HOH A 41 2041 2041 HOH HOH . 
M 5 HOH A 42 2042 2042 HOH HOH . 
M 5 HOH A 43 2043 2043 HOH HOH . 
M 5 HOH A 44 2044 2044 HOH HOH . 
M 5 HOH A 45 2045 2045 HOH HOH . 
M 5 HOH A 46 2046 2046 HOH HOH . 
M 5 HOH A 47 2047 2047 HOH HOH . 
M 5 HOH A 48 2048 2048 HOH HOH . 
M 5 HOH A 49 2049 2049 HOH HOH . 
M 5 HOH A 50 2050 2050 HOH HOH . 
M 5 HOH A 51 2051 2051 HOH HOH . 
M 5 HOH A 52 2052 2052 HOH HOH . 
M 5 HOH A 53 2053 2053 HOH HOH . 
M 5 HOH A 54 2054 2054 HOH HOH . 
M 5 HOH A 55 2055 2055 HOH HOH . 
M 5 HOH A 56 2056 2056 HOH HOH . 
N 5 HOH B 1 2001 2001 HOH HOH . 
N 5 HOH B 2 2002 2002 HOH HOH . 
N 5 HOH B 3 2003 2003 HOH HOH . 
N 5 HOH B 4 2004 2004 HOH HOH . 
N 5 HOH B 5 2005 2005 HOH HOH . 
N 5 HOH B 6 2006 2006 HOH HOH . 
N 5 HOH B 7 2007 2007 HOH HOH . 
N 5 HOH B 8 2008 2008 HOH HOH . 
N 5 HOH B 9 2009 2009 HOH HOH . 
N 5 HOH B 10 2010 2010 HOH HOH . 
N 5 HOH B 11 2011 2011 HOH HOH . 
N 5 HOH B 12 2012 2012 HOH HOH . 
N 5 HOH B 13 2013 2013 HOH HOH . 
N 5 HOH B 14 2014 2014 HOH HOH . 
N 5 HOH B 15 2015 2015 HOH HOH . 
N 5 HOH B 16 2016 2016 HOH HOH . 
N 5 HOH B 17 2017 2017 HOH HOH . 
N 5 HOH B 18 2018 2018 HOH HOH . 
N 5 HOH B 19 2019 2019 HOH HOH . 
N 5 HOH B 20 2020 2020 HOH HOH . 
N 5 HOH B 21 2021 2021 HOH HOH . 
N 5 HOH B 22 2022 2022 HOH HOH . 
N 5 HOH B 23 2023 2023 HOH HOH . 
N 5 HOH B 24 2024 2024 HOH HOH . 
N 5 HOH B 25 2025 2025 HOH HOH . 
N 5 HOH B 26 2026 2026 HOH HOH . 
N 5 HOH B 27 2027 2027 HOH HOH . 
N 5 HOH B 28 2028 2028 HOH HOH . 
N 5 HOH B 29 2029 2029 HOH HOH . 
N 5 HOH B 30 2030 2030 HOH HOH . 
N 5 HOH B 31 2031 2031 HOH HOH . 
N 5 HOH B 32 2032 2032 HOH HOH . 
N 5 HOH B 33 2033 2033 HOH HOH . 
N 5 HOH B 34 2034 2034 HOH HOH . 
N 5 HOH B 35 2035 2035 HOH HOH . 
N 5 HOH B 36 2036 2036 HOH HOH . 
N 5 HOH B 37 2037 2037 HOH HOH . 
N 5 HOH B 38 2038 2038 HOH HOH . 
N 5 HOH B 39 2039 2039 HOH HOH . 
N 5 HOH B 40 2040 2040 HOH HOH . 
N 5 HOH B 41 2041 2041 HOH HOH . 
N 5 HOH B 42 2042 2042 HOH HOH . 
N 5 HOH B 43 2043 2043 HOH HOH . 
N 5 HOH B 44 2044 2044 HOH HOH . 
N 5 HOH B 45 2045 2045 HOH HOH . 
N 5 HOH B 46 2046 2046 HOH HOH . 
N 5 HOH B 47 2047 2047 HOH HOH . 
N 5 HOH B 48 2048 2048 HOH HOH . 
N 5 HOH B 49 2049 2049 HOH HOH . 
N 5 HOH B 50 2050 2050 HOH HOH . 
N 5 HOH B 51 2051 2051 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 O5U . . . F 3 8.6 -40.768 1.135 1 38.28 ? C1 O5U 1213 A 1 
HETATM 2 C C2 O5U . . . F 3 9.467 -41.126 0.124 1 35.89 ? C2 O5U 1213 A 1 
HETATM 3 C C3 O5U . . . F 3 8.028 -41.737 1.934 1 37.5 ? C3 O5U 1213 A 1 
HETATM 4 C C4 O5U . . . F 3 9.776 -42.454 -0.093 1 37.73 ? C4 O5U 1213 A 1 
HETATM 5 C C5 O5U . . . F 3 11.444 -44.864 -1.413 1 23.97 ? C5 O5U 1213 A 1 
HETATM 6 C C6 O5U . . . F 3 12.441 -44.655 -2.353 1 21.53 ? C6 O5U 1213 A 1 
HETATM 7 C C7 O5U . . . F 3 13.088 -45.399 0.272 1 23.66 ? C7 O5U 1213 A 1 
HETATM 8 C C8 O5U . . . F 3 8.334 -43.058 1.708 1 39.31 ? C8 O5U 1213 A 1 
HETATM 9 C C9 O5U . . . F 3 9.208 -43.417 0.715 1 38.66 ? C9 O5U 1213 A 1 
HETATM 10 C C10 O5U . . . F 3 11.76 -45.235 -0.111 1 26.06 ? C10 O5U 1213 A 1 
HETATM 11 C C11 O5U . . . F 3 13.753 -44.81 -1.956 1 23.04 ? C11 O5U 1213 A 1 
HETATM 12 C C12 O5U . . . F 3 14.083 -45.18 -0.664 1 22.91 ? C12 O5U 1213 A 1 
HETATM 13 C C13 O5U . . . F 3 13.458 -45.823 1.677 1 22.38 ? C13 O5U 1213 A 1 
HETATM 14 C C14 O5U . . . F 3 7.723 -47.74 1.666 1 50.19 ? C14 O5U 1213 A 1 
HETATM 15 C C15 O5U . . . F 3 17.01 -45.536 -5.194 1 31.71 ? C15 O5U 1213 A 1 
HETATM 16 C C16 O5U . . . F 3 7.814 -44.235 2.453 1 39.89 ? C16 O5U 1213 A 1 
HETATM 17 C C17 O5U . . . F 3 16.385 -44.593 -0.945 1 23.52 ? C17 O5U 1213 A 1 
HETATM 18 C C18 O5U . . . F 3 9.354 -44.909 0.61 1 37.99 ? C18 O5U 1213 A 1 
HETATM 19 C C19 O5U . . . F 3 8.168 -45.364 1.496 1 40.42 ? C19 O5U 1213 A 1 
HETATM 20 C C20 O5U . . . F 3 15.956 -44.132 -2.322 1 27.3 ? C20 O5U 1213 A 1 
HETATM 21 C C21 O5U . . . F 3 10.706 -45.49 0.943 1 30.75 ? C21 O5U 1213 A 1 
HETATM 22 C C22 O5U . . . F 3 8.11 -48.991 2.426 1 51.29 ? C22 O5U 1213 A 1 
HETATM 23 C C23 O5U . . . F 3 16.763 -44.111 -4.709 1 28.94 ? C23 O5U 1213 A 1 
HETATM 24 C C24 O5U . . . F 3 17.142 -44.266 -3.264 1 27.08 ? C24 O5U 1213 A 1 
HETATM 25 C C25 O5U . . . F 3 9.571 -49.028 2.846 1 50.95 ? C25 O5U 1213 A 1 
HETATM 26 C C26 O5U . . . F 3 9.779 -48.267 4.141 1 51.51 ? C26 O5U 1213 A 1 
HETATM 27 C C27 O5U . . . F 3 10.201 -49.195 5.256 1 50.1 ? C27 O5U 1213 A 1 
HETATM 28 C C28 O5U . . . F 3 10.706 -48.319 6.375 1 49.87 ? C28 O5U 1213 A 1 
HETATM 29 N N29 O5U . . . F 3 8.322 -46.61 2.183 1 45.63 ? N29 O5U 1213 A 1 
HETATM 30 N N30 O5U . . . F 3 11.32 -49.16 7.423 1 48.69 ? N30 O5U 1213 A 1 
HETATM 31 O O31 O5U . . . F 3 12.979 -46.922 2.115 1 21.44 ? O31 O5U 1213 A 1 
HETATM 32 O O32 O5U . . . F 3 16.101 -46.059 -5.92 1 29.43 ? O32 O5U 1213 A 1 
HETATM 33 O O33 O5U . . . F 3 14.262 -45.128 2.335 1 20.35 ? O33 O5U 1213 A 1 
HETATM 34 O O34 O5U . . . F 3 6.947 -47.766 0.707 1 50.46 ? O34 O5U 1213 A 1 
HETATM 35 O O35 O5U . . . F 3 18.117 -46.036 -4.833 1 33.87 ? O35 O5U 1213 A 1 
HETATM 36 O O36 O5U . . . F 3 15.41 -45.342 -0.242 1 21.69 ? O36 O5U 1213 A 1 
HETATM 37 O O37 O5U . . . F 3 14.725 -44.613 -2.874 1 24.36 ? O37 O5U 1213 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           37 
#