data_4CF1 # _model_server_result.job_id -BloG8sjdmRHR6_un6BqEg _model_server_result.datetime_utc '2024-11-22 05:08:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cf1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1217}' # _entry.id 4CF1 # _exptl.entry_id 4CF1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.552 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2s)-6-[[(1r,2s)-2-(5-azanylpentanoylamino)-2,3-dihydro-1h-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CF1 _cell.length_a 71.282 _cell.length_b 71.282 _cell.length_c 66.702 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 O N N # _chem_comp.formula 'C27 H32 N2 O7' _chem_comp.formula_weight 496.552 _chem_comp.id IY7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2s)-6-[[(1r,2s)-2-(5-azanylpentanoylamino)-2,3-dihydro-1h-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 IY7 sing 179 n y C2 C1 IY7 doub 180 n y C3 C4 IY7 doub 181 n y C1 C6 IY7 sing 182 n y C4 C5 IY7 sing 183 n y C12 C13 IY7 sing 184 n y C12 C11 IY7 doub 185 n y C13 C14 IY7 doub 186 n y C16 C11 IY7 sing 187 n y C16 C15 IY7 doub 188 n y C16 C17 IY7 sing 189 n n C6 C5 IY7 doub 190 n y C6 C7 IY7 sing 191 n n C5 C9 IY7 sing 192 n n C11 C10 IY7 sing 193 n n C14 C15 IY7 sing 194 n y C14 O23 IY7 sing 195 n n C15 O20 IY7 sing 196 n n C17 O19 IY7 sing 197 n n C17 O18 IY7 doub 198 n n C30 C32 IY7 sing 199 n n C30 N29 IY7 sing 200 n n C30 O31 IY7 doub 201 n n C26 C25 IY7 sing 202 n n C26 O28 IY7 sing 203 n n C26 O27 IY7 doub 204 n n C7 C8 IY7 sing 205 n n C21 C22 IY7 sing 206 n n C21 O20 IY7 sing 207 n n C9 C8 IY7 sing 208 n n C9 C10 IY7 sing 209 n n C8 N29 IY7 sing 210 n n C22 C24 IY7 sing 211 n n C22 O23 IY7 sing 212 n n C32 C33 IY7 sing 213 n n C25 C24 IY7 sing 214 n n C33 C34 IY7 sing 215 n n C34 C35 IY7 sing 216 n n C35 N36 IY7 sing 217 n n C2 H2 IY7 sing 218 n n C3 H3 IY7 sing 219 n n C1 H1 IY7 sing 220 n n C4 H4 IY7 sing 221 n n C12 H12 IY7 sing 222 n n C13 H13 IY7 sing 223 n n C7 H71C IY7 sing 224 n n C7 H72C IY7 sing 225 n n C9 H9 IY7 sing 226 n n C10 H101 IY7 sing 227 n n C10 H102 IY7 sing 228 n n O19 H19 IY7 sing 229 n n C32 H321 IY7 sing 230 n n C32 H322 IY7 sing 231 n n N29 H29 IY7 sing 232 n n C25 H251 IY7 sing 233 n n C25 H252 IY7 sing 234 n n O28 H28 IY7 sing 235 n n C8 H8 IY7 sing 236 n n C21 H211 IY7 sing 237 n n C21 H212 IY7 sing 238 n n C22 H22 IY7 sing 239 n n C24 H241 IY7 sing 240 n n C24 H242 IY7 sing 241 n n C33 H331 IY7 sing 242 n n C33 H332 IY7 sing 243 n n C34 H341 IY7 sing 244 n n C34 H342 IY7 sing 245 n n C35 H351 IY7 sing 246 n n C35 H352 IY7 sing 247 n n N36 H361 IY7 sing 248 n n N36 H362 IY7 sing 249 n n # _atom_sites.entry_id 4CF1 _atom_sites.fract_transf_matrix[1][1] 0.014029 _atom_sites.fract_transf_matrix[1][2] 0.0081 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 2 SO4 A 1 1213 1213 SO4 SO4 . G 3 ACT A 1 1214 1214 ACT ACT . H 4 IY7 A 1 1215 1215 IY7 IY7 . I 2 SO4 B 1 1211 1211 SO4 SO4 . J 2 SO4 B 1 1212 1212 SO4 SO4 . K 2 SO4 B 1 1213 1213 SO4 SO4 . L 2 SO4 B 1 1214 1214 SO4 SO4 . M 3 ACT B 1 1215 1215 ACT ACT . N 3 ACT B 1 1216 1216 ACT ACT . O 4 IY7 B 1 1217 1217 IY7 IY7 . P 5 HOH A 1 2001 2001 HOH HOH . P 5 HOH A 2 2002 2002 HOH HOH . P 5 HOH A 3 2003 2003 HOH HOH . P 5 HOH A 4 2004 2004 HOH HOH . P 5 HOH A 5 2005 2005 HOH HOH . P 5 HOH A 6 2006 2006 HOH HOH . P 5 HOH A 7 2007 2007 HOH HOH . P 5 HOH A 8 2008 2008 HOH HOH . P 5 HOH A 9 2009 2009 HOH HOH . P 5 HOH A 10 2010 2010 HOH HOH . P 5 HOH A 11 2011 2011 HOH HOH . P 5 HOH A 12 2012 2012 HOH HOH . P 5 HOH A 13 2013 2013 HOH HOH . P 5 HOH A 14 2014 2014 HOH HOH . P 5 HOH A 15 2015 2015 HOH HOH . P 5 HOH A 16 2016 2016 HOH HOH . P 5 HOH A 17 2017 2017 HOH HOH . P 5 HOH A 18 2018 2018 HOH HOH . P 5 HOH A 19 2019 2019 HOH HOH . P 5 HOH A 20 2020 2020 HOH HOH . P 5 HOH A 21 2021 2021 HOH HOH . P 5 HOH A 22 2022 2022 HOH HOH . P 5 HOH A 23 2023 2023 HOH HOH . P 5 HOH A 24 2024 2024 HOH HOH . P 5 HOH A 25 2025 2025 HOH HOH . P 5 HOH A 26 2026 2026 HOH HOH . P 5 HOH A 27 2027 2027 HOH HOH . P 5 HOH A 28 2028 2028 HOH HOH . P 5 HOH A 29 2029 2029 HOH HOH . P 5 HOH A 30 2030 2030 HOH HOH . P 5 HOH A 31 2031 2031 HOH HOH . P 5 HOH A 32 2032 2032 HOH HOH . P 5 HOH A 33 2033 2033 HOH HOH . P 5 HOH A 34 2034 2034 HOH HOH . P 5 HOH A 35 2035 2035 HOH HOH . P 5 HOH A 36 2036 2036 HOH HOH . P 5 HOH A 37 2037 2037 HOH HOH . P 5 HOH A 38 2038 2038 HOH HOH . P 5 HOH A 39 2039 2039 HOH HOH . P 5 HOH A 40 2040 2040 HOH HOH . P 5 HOH A 41 2041 2041 HOH HOH . P 5 HOH A 42 2042 2042 HOH HOH . P 5 HOH A 43 2043 2043 HOH HOH . P 5 HOH A 44 2044 2044 HOH HOH . P 5 HOH A 45 2045 2045 HOH HOH . P 5 HOH A 46 2046 2046 HOH HOH . P 5 HOH A 47 2047 2047 HOH HOH . P 5 HOH A 48 2048 2048 HOH HOH . P 5 HOH A 49 2049 2049 HOH HOH . P 5 HOH A 50 2050 2050 HOH HOH . P 5 HOH A 51 2051 2051 HOH HOH . P 5 HOH A 52 2052 2052 HOH HOH . P 5 HOH A 53 2053 2053 HOH HOH . P 5 HOH A 54 2054 2054 HOH HOH . P 5 HOH A 55 2055 2055 HOH HOH . P 5 HOH A 56 2056 2056 HOH HOH . P 5 HOH A 57 2057 2057 HOH HOH . P 5 HOH A 58 2058 2058 HOH HOH . P 5 HOH A 59 2059 2059 HOH HOH . P 5 HOH A 60 2060 2060 HOH HOH . P 5 HOH A 61 2061 2061 HOH HOH . P 5 HOH A 62 2062 2062 HOH HOH . P 5 HOH A 63 2063 2063 HOH HOH . P 5 HOH A 64 2064 2064 HOH HOH . P 5 HOH A 65 2065 2065 HOH HOH . P 5 HOH A 66 2066 2066 HOH HOH . P 5 HOH A 67 2067 2067 HOH HOH . Q 5 HOH B 1 2001 2001 HOH HOH . Q 5 HOH B 2 2002 2002 HOH HOH . Q 5 HOH B 3 2003 2003 HOH HOH . Q 5 HOH B 4 2004 2004 HOH HOH . Q 5 HOH B 5 2005 2005 HOH HOH . Q 5 HOH B 6 2006 2006 HOH HOH . Q 5 HOH B 7 2007 2007 HOH HOH . Q 5 HOH B 8 2008 2008 HOH HOH . Q 5 HOH B 9 2009 2009 HOH HOH . Q 5 HOH B 10 2010 2010 HOH HOH . Q 5 HOH B 11 2011 2011 HOH HOH . Q 5 HOH B 12 2012 2012 HOH HOH . Q 5 HOH B 13 2013 2013 HOH HOH . Q 5 HOH B 14 2014 2014 HOH HOH . Q 5 HOH B 15 2015 2015 HOH HOH . Q 5 HOH B 16 2016 2016 HOH HOH . Q 5 HOH B 17 2017 2017 HOH HOH . Q 5 HOH B 18 2018 2018 HOH HOH . Q 5 HOH B 19 2019 2019 HOH HOH . Q 5 HOH B 20 2020 2020 HOH HOH . Q 5 HOH B 21 2021 2021 HOH HOH . Q 5 HOH B 22 2022 2022 HOH HOH . Q 5 HOH B 23 2023 2023 HOH HOH . Q 5 HOH B 24 2024 2024 HOH HOH . Q 5 HOH B 25 2025 2025 HOH HOH . Q 5 HOH B 26 2026 2026 HOH HOH . Q 5 HOH B 27 2027 2027 HOH HOH . Q 5 HOH B 28 2028 2028 HOH HOH . Q 5 HOH B 29 2029 2029 HOH HOH . Q 5 HOH B 30 2030 2030 HOH HOH . Q 5 HOH B 31 2031 2031 HOH HOH . Q 5 HOH B 32 2032 2032 HOH HOH . Q 5 HOH B 33 2033 2033 HOH HOH . Q 5 HOH B 34 2034 2034 HOH HOH . Q 5 HOH B 35 2035 2035 HOH HOH . Q 5 HOH B 36 2036 2036 HOH HOH . Q 5 HOH B 37 2037 2037 HOH HOH . Q 5 HOH B 38 2038 2038 HOH HOH . Q 5 HOH B 39 2039 2039 HOH HOH . Q 5 HOH B 40 2040 2040 HOH HOH . Q 5 HOH B 41 2041 2041 HOH HOH . Q 5 HOH B 42 2042 2042 HOH HOH . Q 5 HOH B 43 2043 2043 HOH HOH . Q 5 HOH B 44 2044 2044 HOH HOH . Q 5 HOH B 45 2045 2045 HOH HOH . Q 5 HOH B 46 2046 2046 HOH HOH . Q 5 HOH B 47 2047 2047 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 IY7 . . . O 4 -8.53 40.887 13.241 1 44.04 ? C2 IY7 1217 B 1 HETATM 2 C C3 IY7 . . . O 4 -9.34 41.18 12.165 1 42.54 ? C3 IY7 1217 B 1 HETATM 3 C C1 IY7 . . . O 4 -8.012 41.902 14.013 1 44.01 ? C1 IY7 1217 B 1 HETATM 4 C C4 IY7 . . . O 4 -9.639 42.486 11.85 1 43.45 ? C4 IY7 1217 B 1 HETATM 5 C C12 IY7 . . . O 4 -11.477 44.877 10.532 1 31.73 ? C12 IY7 1217 B 1 HETATM 6 C C13 IY7 . . . O 4 -12.478 44.657 9.613 1 29.19 ? C13 IY7 1217 B 1 HETATM 7 C C16 IY7 . . . O 4 -13.098 45.392 12.206 1 29.71 ? C16 IY7 1217 B 1 HETATM 8 C C6 IY7 . . . O 4 -8.325 43.198 13.693 1 46.39 ? C6 IY7 1217 B 1 HETATM 9 C C5 IY7 . . . O 4 -9.127 43.497 12.63 1 45.61 ? C5 IY7 1217 B 1 HETATM 10 C C11 IY7 . . . O 4 -11.767 45.243 11.837 1 34 ? C11 IY7 1217 B 1 HETATM 11 C C14 IY7 . . . O 4 -13.792 44.803 9.985 1 29.31 ? C14 IY7 1217 B 1 HETATM 12 C C15 IY7 . . . O 4 -14.1 45.17 11.278 1 29.76 ? C15 IY7 1217 B 1 HETATM 13 C C17 IY7 . . . O 4 -13.477 45.787 13.589 1 29.72 ? C17 IY7 1217 B 1 HETATM 14 C C30 IY7 . . . O 4 -8 47.898 13.379 1 66.66 ? C30 IY7 1217 B 1 HETATM 15 C C26 IY7 . . . O 4 -16.997 45.623 6.695 1 37.42 ? C26 IY7 1217 B 1 HETATM 16 C C7 IY7 . . . O 4 -7.866 44.411 14.401 1 48.17 ? C7 IY7 1217 B 1 HETATM 17 C C21 IY7 . . . O 4 -16.24 44.498 10.875 1 32.05 ? C21 IY7 1217 B 1 HETATM 18 C C9 IY7 . . . O 4 -9.299 44.97 12.463 1 44.57 ? C9 IY7 1217 B 1 HETATM 19 C C8 IY7 . . . O 4 -8.168 45.478 13.364 1 48.88 ? C8 IY7 1217 B 1 HETATM 20 C C22 IY7 . . . O 4 -16.048 44.911 9.435 1 32.72 ? C22 IY7 1217 B 1 HETATM 21 C C10 IY7 . . . O 4 -10.678 45.484 12.856 1 38.99 ? C10 IY7 1217 B 1 HETATM 22 C C32 IY7 . . . O 4 -8.464 49.104 14.136 1 72.92 ? C32 IY7 1217 B 1 HETATM 23 C C25 IY7 . . . O 4 -16.799 44.176 7.121 1 34.24 ? C25 IY7 1217 B 1 HETATM 24 C C24 IY7 . . . O 4 -17.075 44.158 8.612 1 33.72 ? C24 IY7 1217 B 1 HETATM 25 C C33 IY7 . . . O 4 -7.937 50.345 13.454 1 77.96 ? C33 IY7 1217 B 1 HETATM 26 C C34 IY7 . . . O 4 -8.433 51.57 14.184 1 80.64 ? C34 IY7 1217 B 1 HETATM 27 C C35 IY7 . . . O 4 -8.197 52.776 13.309 1 81.7 ? C35 IY7 1217 B 1 HETATM 28 N N29 IY7 . . . O 4 -8.438 46.746 13.983 1 55.37 ? N29 IY7 1217 B 1 HETATM 29 N N36 IY7 . . . O 4 -8.757 53.955 14.004 1 81.96 ? N36 IY7 1217 B 1 HETATM 30 O O19 IY7 . . . O 4 -14.342 45.106 14.209 1 27.65 ? O19 IY7 1217 B 1 HETATM 31 O O28 IY7 . . . O 4 -16.037 46.118 6.041 1 38.04 ? O28 IY7 1217 B 1 HETATM 32 O O18 IY7 . . . O 4 -12.91 46.808 14.058 1 29.63 ? O18 IY7 1217 B 1 HETATM 33 O O31 IY7 . . . O 4 -7.322 47.957 12.359 1 66.99 ? O31 IY7 1217 B 1 HETATM 34 O O27 IY7 . . . O 4 -18.096 46.152 7.016 1 39.54 ? O27 IY7 1217 B 1 HETATM 35 O O20 IY7 . . . O 4 -15.419 45.321 11.689 1 31.21 ? O20 IY7 1217 B 1 HETATM 36 O O23 IY7 . . . O 4 -14.735 44.555 9.007 1 30.72 ? O23 IY7 1217 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 36 #