data_4CF2 # _model_server_result.job_id wd6toccnQ-_u47jPGZXDhQ _model_server_result.datetime_utc '2024-11-25 06:05:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1213}' # _entry.id 4CF2 # _exptl.entry_id 4CF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.526 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2s)-6-[[(1r,2s)-2-(4-azanylbutanoylamino)-2,3-dihydro-1h-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CF2 _cell.length_a 71.313 _cell.length_b 71.313 _cell.length_c 66.38 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N # _chem_comp.formula 'C26 H30 N2 O7' _chem_comp.formula_weight 482.526 _chem_comp.id 3GM _chem_comp.mon_nstd_flag . _chem_comp.name '(2s)-6-[[(1r,2s)-2-(4-azanylbutanoylamino)-2,3-dihydro-1h-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3GM sing 1 n y C1 C3 3GM doub 2 n y C2 C4 3GM doub 3 n y C3 C8 3GM sing 4 n y C4 C9 3GM sing 5 n y C5 C6 3GM sing 6 n y C5 C10 3GM doub 7 n y C6 C11 3GM doub 8 n y C7 C10 3GM sing 9 n y C7 C12 3GM doub 10 n y C7 C13 3GM sing 11 n n C8 C9 3GM doub 12 n y C8 C16 3GM sing 13 n n C9 C18 3GM sing 14 n n C10 C21 3GM sing 15 n n C11 C12 3GM sing 16 n y C11 O35 3GM sing 17 n n C12 O34 3GM sing 18 n n C13 O29 3GM doub 19 n n C13 O31 3GM sing 20 n n C14 C22 3GM sing 21 n n C14 N27 3GM sing 22 n n C14 O32 3GM doub 23 n n C15 C23 3GM sing 24 n n C15 O30 3GM sing 25 n n C15 O33 3GM doub 26 n n C16 C19 3GM sing 27 n n C17 C20 3GM sing 28 n n C17 O34 3GM sing 29 n n C18 C19 3GM sing 30 n n C18 C21 3GM sing 31 n n C19 N27 3GM sing 32 n n C20 C24 3GM sing 33 n n C20 O35 3GM sing 34 n n C22 C25 3GM sing 35 n n C23 C24 3GM sing 36 n n C25 C26 3GM sing 37 n n C26 N28 3GM sing 38 n n C1 H1 3GM sing 39 n n C2 H2 3GM sing 40 n n C3 H3 3GM sing 41 n n C4 H4 3GM sing 42 n n C5 H5 3GM sing 43 n n C6 H6 3GM sing 44 n n C16 H161 3GM sing 45 n n C16 H162 3GM sing 46 n n C18 H18 3GM sing 47 n n C21 H211 3GM sing 48 n n C21 H212 3GM sing 49 n n O31 H31 3GM sing 50 n n C22 H221 3GM sing 51 n n C22 H222 3GM sing 52 n n N27 H27 3GM sing 53 n n C23 H231 3GM sing 54 n n C23 H232 3GM sing 55 n n O30 H30 3GM sing 56 n n C19 H19 3GM sing 57 n n C17 H171 3GM sing 58 n n C17 H172 3GM sing 59 n n C20 H20 3GM sing 60 n n C24 H241 3GM sing 61 n n C24 H242 3GM sing 62 n n C25 H251 3GM sing 63 n n C25 H252 3GM sing 64 n n C26 H261 3GM sing 65 n n C26 H262 3GM sing 66 n n N28 H281 3GM sing 67 n n N28 H282 3GM sing 68 n n # _atom_sites.entry_id 4CF2 _atom_sites.fract_transf_matrix[1][1] 0.014023 _atom_sites.fract_transf_matrix[1][2] 0.008096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 3GM A 1 1213 1213 3GM 3GM . G 2 SO4 B 1 1210 1210 SO4 SO4 . H 2 SO4 B 1 1211 1211 SO4 SO4 . I 2 SO4 B 1 1212 1212 SO4 SO4 . J 3 3GM B 1 1213 1213 3GM 3GM . K 4 HOH A 1 2001 2001 HOH HOH . K 4 HOH A 2 2002 2002 HOH HOH . K 4 HOH A 3 2003 2003 HOH HOH . K 4 HOH A 4 2004 2004 HOH HOH . K 4 HOH A 5 2005 2005 HOH HOH . K 4 HOH A 6 2006 2006 HOH HOH . K 4 HOH A 7 2007 2007 HOH HOH . K 4 HOH A 8 2008 2008 HOH HOH . K 4 HOH A 9 2009 2009 HOH HOH . K 4 HOH A 10 2010 2010 HOH HOH . K 4 HOH A 11 2011 2011 HOH HOH . K 4 HOH A 12 2012 2012 HOH HOH . K 4 HOH A 13 2013 2013 HOH HOH . K 4 HOH A 14 2014 2014 HOH HOH . K 4 HOH A 15 2015 2015 HOH HOH . K 4 HOH A 16 2016 2016 HOH HOH . K 4 HOH A 17 2017 2017 HOH HOH . K 4 HOH A 18 2018 2018 HOH HOH . K 4 HOH A 19 2019 2019 HOH HOH . K 4 HOH A 20 2020 2020 HOH HOH . K 4 HOH A 21 2021 2021 HOH HOH . K 4 HOH A 22 2022 2022 HOH HOH . K 4 HOH A 23 2023 2023 HOH HOH . K 4 HOH A 24 2024 2024 HOH HOH . K 4 HOH A 25 2025 2025 HOH HOH . K 4 HOH A 26 2026 2026 HOH HOH . K 4 HOH A 27 2027 2027 HOH HOH . K 4 HOH A 28 2028 2028 HOH HOH . K 4 HOH A 29 2029 2029 HOH HOH . K 4 HOH A 30 2030 2030 HOH HOH . K 4 HOH A 31 2031 2031 HOH HOH . K 4 HOH A 32 2032 2032 HOH HOH . K 4 HOH A 33 2033 2033 HOH HOH . K 4 HOH A 34 2034 2034 HOH HOH . K 4 HOH A 35 2035 2035 HOH HOH . K 4 HOH A 36 2036 2036 HOH HOH . K 4 HOH A 37 2037 2037 HOH HOH . K 4 HOH A 38 2038 2038 HOH HOH . K 4 HOH A 39 2039 2039 HOH HOH . K 4 HOH A 40 2040 2040 HOH HOH . K 4 HOH A 41 2041 2041 HOH HOH . K 4 HOH A 42 2042 2042 HOH HOH . K 4 HOH A 43 2043 2043 HOH HOH . K 4 HOH A 44 2044 2044 HOH HOH . K 4 HOH A 45 2045 2045 HOH HOH . K 4 HOH A 46 2046 2046 HOH HOH . L 4 HOH B 1 2001 2001 HOH HOH . L 4 HOH B 2 2002 2002 HOH HOH . L 4 HOH B 3 2003 2003 HOH HOH . L 4 HOH B 4 2004 2004 HOH HOH . L 4 HOH B 5 2005 2005 HOH HOH . L 4 HOH B 6 2006 2006 HOH HOH . L 4 HOH B 7 2007 2007 HOH HOH . L 4 HOH B 8 2008 2008 HOH HOH . L 4 HOH B 9 2009 2009 HOH HOH . L 4 HOH B 10 2010 2010 HOH HOH . L 4 HOH B 11 2011 2011 HOH HOH . L 4 HOH B 12 2012 2012 HOH HOH . L 4 HOH B 13 2013 2013 HOH HOH . L 4 HOH B 14 2014 2014 HOH HOH . L 4 HOH B 15 2015 2015 HOH HOH . L 4 HOH B 16 2016 2016 HOH HOH . L 4 HOH B 17 2017 2017 HOH HOH . L 4 HOH B 18 2018 2018 HOH HOH . L 4 HOH B 19 2019 2019 HOH HOH . L 4 HOH B 20 2020 2020 HOH HOH . L 4 HOH B 21 2021 2021 HOH HOH . L 4 HOH B 22 2022 2022 HOH HOH . L 4 HOH B 23 2023 2023 HOH HOH . L 4 HOH B 24 2024 2024 HOH HOH . L 4 HOH B 25 2025 2025 HOH HOH . L 4 HOH B 26 2026 2026 HOH HOH . L 4 HOH B 27 2027 2027 HOH HOH . L 4 HOH B 28 2028 2028 HOH HOH . L 4 HOH B 29 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3GM . . . F 3 8.246 -40.779 1.006 1 46.48 ? C1 3GM 1213 A 1 HETATM 2 C C2 3GM . . . F 3 9.068 -41.079 -0.057 1 45.96 ? C2 3GM 1213 A 1 HETATM 3 C C3 3GM . . . F 3 7.75 -41.789 1.799 1 47.45 ? C3 3GM 1213 A 1 HETATM 4 C C4 3GM . . . F 3 9.403 -42.383 -0.341 1 46.41 ? C4 3GM 1213 A 1 HETATM 5 C C5 3GM . . . F 3 11.385 -44.623 -1.501 1 34 ? C5 3GM 1213 A 1 HETATM 6 C C6 3GM . . . F 3 12.411 -44.563 -2.412 1 32.21 ? C6 3GM 1213 A 1 HETATM 7 C C7 3GM . . . F 3 12.918 -45.295 0.2 1 32.75 ? C7 3GM 1213 A 1 HETATM 8 C C8 3GM . . . F 3 8.095 -43.084 1.508 1 46.66 ? C8 3GM 1213 A 1 HETATM 9 C C9 3GM . . . F 3 8.904 -43.39 0.455 1 45.27 ? C9 3GM 1213 A 1 HETATM 10 C C10 3GM . . . F 3 11.625 -44.989 -0.19 1 34.28 ? C10 3GM 1213 A 1 HETATM 11 C C11 3GM . . . F 3 13.688 -44.864 -2.012 1 33.25 ? C11 3GM 1213 A 1 HETATM 12 C C12 3GM . . . F 3 13.943 -45.234 -0.715 1 32.58 ? C12 3GM 1213 A 1 HETATM 13 C C13 3GM . . . F 3 13.244 -45.695 1.593 1 32.83 ? C13 3GM 1213 A 1 HETATM 14 C C14 3GM . . . F 3 9.135 -47.56 1.768 1 59.17 ? C14 3GM 1213 A 1 HETATM 15 C C15 3GM . . . F 3 17.62 -44.344 -5.048 1 55.27 ? C15 3GM 1213 A 1 HETATM 16 C C16 3GM . . . F 3 7.662 -44.287 2.243 1 47.17 ? C16 3GM 1213 A 1 HETATM 17 C C17 3GM . . . F 3 16.092 -44.624 -0.937 1 38.65 ? C17 3GM 1213 A 1 HETATM 18 C C18 3GM . . . F 3 9.13 -44.853 0.354 1 42.27 ? C18 3GM 1213 A 1 HETATM 19 C C19 3GM . . . F 3 8.026 -45.396 1.273 1 45.37 ? C19 3GM 1213 A 1 HETATM 20 C C20 3GM . . . F 3 15.996 -44.794 -2.436 1 40.64 ? C20 3GM 1213 A 1 HETATM 21 C C21 3GM . . . F 3 10.544 -45.069 0.845 1 38.97 ? C21 3GM 1213 A 1 HETATM 22 C C22 3GM . . . F 3 9.916 -47.961 2.987 1 59.68 ? C22 3GM 1213 A 1 HETATM 23 C C23 3GM . . . F 3 18.008 -44.04 -3.63 1 48.89 ? C23 3GM 1213 A 1 HETATM 24 C C24 3GM . . . F 3 16.677 -43.619 -3.087 1 44.14 ? C24 3GM 1213 A 1 HETATM 25 C C25 3GM . . . F 3 9.483 -49.323 3.484 1 61.81 ? C25 3GM 1213 A 1 HETATM 26 C C26 3GM . . . F 3 9.146 -49.276 4.962 1 61.26 ? C26 3GM 1213 A 1 HETATM 27 N N27 3GM . . . F 3 8.263 -46.56 2.09 1 50.84 ? N27 3GM 1213 A 1 HETATM 28 N N28 3GM . . . F 3 10.391 -49.216 5.766 1 58.55 ? N28 3GM 1213 A 1 HETATM 29 O O29 3GM . . . F 3 14.059 -44.997 2.242 1 27.56 ? O29 3GM 1213 A 1 HETATM 30 O O30 3GM . . . F 3 17.146 -45.503 -5.243 1 57.38 ? O30 3GM 1213 A 1 HETATM 31 O O31 3GM . . . F 3 12.675 -46.727 2.026 1 34.27 ? O31 3GM 1213 A 1 HETATM 32 O O32 3GM . . . F 3 9.276 -48.049 0.655 1 65.38 ? O32 3GM 1213 A 1 HETATM 33 O O33 3GM . . . F 3 17.834 -43.367 -5.82 1 57.39 ? O33 3GM 1213 A 1 HETATM 34 O O34 3GM . . . F 3 15.227 -45.55 -0.307 1 36.19 ? O34 3GM 1213 A 1 HETATM 35 O O35 3GM . . . F 3 14.669 -44.791 -2.971 1 36.32 ? O35 3GM 1213 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #