data_4CF6
#
_model_server_result.job_id            fHmN4Dd-lIvYeFiDvgNtqA 
_model_server_result.datetime_utc      '2024-10-13 20:27:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1275}' 
#
_entry.id    4CF6 
#
_exptl.entry_id    4CF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              774.157 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CIBACRON BLUE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CF6 
_cell.length_a            104.167 
_cell.length_b            104.563 
_cell.length_c            118.566 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C29 H20 Cl N7 O11 S3' 
_chem_comp.formula_weight    774.157 
_chem_comp.id                CBD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CIBACRON BLUE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 SA CBD sing 70 n n 
C1 C2 CBD doub 71 n y 
C1 C14 CBD sing 72 n y 
SA O1A CBD doub 73 n n 
SA O2A CBD doub 74 n n 
SA O3A CBD sing 75 n n 
O3A HOA3 CBD sing 76 n n 
C2 N2 CBD sing 77 n n 
C2 C3 CBD sing 78 n y 
N2 HN21 CBD sing 79 n n 
N2 HN22 CBD sing 80 n n 
C3 C4 CBD sing 81 n n 
C3 C12 CBD doub 82 n y 
C4 O4 CBD doub 83 n n 
C4 C5 CBD sing 84 n n 
C5 C6 CBD doub 85 n y 
C5 C10 CBD sing 86 n y 
C6 C7 CBD sing 87 n y 
C6 H6 CBD sing 88 n n 
C7 C8 CBD doub 89 n y 
C7 H7 CBD sing 90 n n 
C8 C9 CBD sing 91 n y 
C8 H8 CBD sing 92 n n 
C9 C10 CBD doub 93 n y 
C9 H9 CBD sing 94 n n 
C10 C11 CBD sing 95 n n 
C11 O11 CBD doub 96 n n 
C11 C12 CBD sing 97 n n 
C12 C13 CBD sing 98 n y 
C13 C14 CBD doub 99 n y 
C13 NB CBD sing 100 n n 
C14 H14 CBD sing 101 n n 
NB CB5 CBD sing 102 n n 
NB HNB CBD sing 103 n n 
CB1 SB CBD sing 104 n n 
CB1 CB2 CBD doub 105 n y 
CB1 CB6 CBD sing 106 n y 
SB O1B CBD doub 107 n n 
SB O2B CBD doub 108 n n 
SB O3B CBD sing 109 n n 
O3B HOB3 CBD sing 110 n n 
CB2 CB3 CBD sing 111 n y 
CB2 NC CBD sing 112 n n 
CB3 CB4 CBD doub 113 n y 
CB3 HB3 CBD sing 114 n n 
CB4 CB5 CBD sing 115 n y 
CB4 HB4 CBD sing 116 n n 
CB5 CB6 CBD doub 117 n y 
CB6 HB6 CBD sing 118 n n 
NC CC6 CBD sing 119 n n 
NC HNC CBD sing 120 n n 
NC1 CC2 CBD doub 121 n y 
NC1 CC6 CBD sing 122 n y 
CC2 CL CBD sing 123 n n 
CC2 NC3 CBD sing 124 n y 
NC3 CC4 CBD doub 125 n y 
CC4 NC5 CBD sing 126 n y 
CC4 ND CBD sing 127 n n 
NC5 CC6 CBD doub 128 n y 
ND CD2 CBD sing 129 n n 
ND HND CBD sing 130 n n 
CD1 SD CBD sing 131 n n 
CD1 CD2 CBD doub 132 n y 
CD1 CD6 CBD sing 133 n y 
SD O1D CBD doub 134 n n 
SD O2D CBD doub 135 n n 
SD O3D CBD sing 136 n n 
O3D HOD3 CBD sing 137 n n 
CD2 CD3 CBD sing 138 n y 
CD3 CD4 CBD doub 139 n y 
CD3 HD3 CBD sing 140 n n 
CD4 CD5 CBD sing 141 n y 
CD4 HD4 CBD sing 142 n n 
CD5 CD6 CBD doub 143 n y 
CD5 HD5 CBD sing 144 n n 
CD6 HD6 CBD sing 145 n n 
#
_atom_sites.entry_id                     4CF6 
_atom_sites.fract_transf_matrix[1][1]    0.0096 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009564 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008434 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1274 1274 FAD FAD . 
D 3 CBD A 1 1275 1275 CBD CBD . 
E 2 FAD B 1 1275 1275 FAD FAD . 
F 3 CBD B 1 1276 1276 CBD CBD . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CBD . . . D 3 18.518 32.242 34.482 0.86 44.18 ? C1 CBD 1275 A 1 
HETATM 2 S SA CBD . . . D 3 19.92 33.159 33.934 0.86 47.65 ? SA CBD 1275 A 1 
HETATM 3 O O1A CBD . . . D 3 19.449 34.37 33.165 0.86 45.59 ? O1A CBD 1275 A 1 
HETATM 4 O O2A CBD . . . D 3 20.726 33.6 35.131 0.86 49.42 ? O2A CBD 1275 A 1 
HETATM 5 O O3A CBD . . . D 3 20.785 32.296 33.042 0.86 46.79 ? O3A CBD 1275 A 1 
HETATM 6 C C2 CBD . . . D 3 17.323 32.874 34.783 0.86 42.4 ? C2 CBD 1275 A 1 
HETATM 7 N N2 CBD . . . D 3 17.25 34.296 34.637 0.86 40.97 ? N2 CBD 1275 A 1 
HETATM 8 C C3 CBD . . . D 3 16.21 32.13 35.22 0.86 39.93 ? C3 CBD 1275 A 1 
HETATM 9 C C4 CBD . . . D 3 15.01 32.754 35.524 0.86 37.35 ? C4 CBD 1275 A 1 
HETATM 10 O O4 CBD . . . D 3 14.911 33.963 35.414 0.86 36.9 ? O4 CBD 1275 A 1 
HETATM 11 C C5 CBD . . . D 3 13.922 32 35.953 0.86 36.11 ? C5 CBD 1275 A 1 
HETATM 12 C C6 CBD . . . D 3 12.718 32.623 36.258 0.86 35.03 ? C6 CBD 1275 A 1 
HETATM 13 C C7 CBD . . . D 3 11.643 31.868 36.685 0.86 34.78 ? C7 CBD 1275 A 1 
HETATM 14 C C8 CBD . . . D 3 11.751 30.503 36.813 0.86 34.36 ? C8 CBD 1275 A 1 
HETATM 15 C C9 CBD . . . D 3 12.939 29.867 36.515 0.86 35.18 ? C9 CBD 1275 A 1 
HETATM 16 C C10 CBD . . . D 3 14.032 30.613 36.082 0.86 36.54 ? C10 CBD 1275 A 1 
HETATM 17 C C11 CBD . . . D 3 15.239 29.983 35.778 0.86 38.47 ? C11 CBD 1275 A 1 
HETATM 18 O O11 CBD . . . D 3 15.337 28.777 35.891 0.86 37.81 ? O11 CBD 1275 A 1 
HETATM 19 C C12 CBD . . . D 3 16.32 30.746 35.347 0.86 40.29 ? C12 CBD 1275 A 1 
HETATM 20 C C13 CBD . . . D 3 17.555 30.149 35.028 0.86 43.24 ? C13 CBD 1275 A 1 
HETATM 21 C C14 CBD . . . D 3 18.628 30.894 34.602 0.86 43.82 ? C14 CBD 1275 A 1 
HETATM 22 N NB CBD . . . D 3 17.696 28.74 35.162 0.86 43.17 ? NB CBD 1275 A 1 
HETATM 23 C CB1 CBD . . . D 3 21.065 27.127 35.073 0.86 50.46 ? CB1 CBD 1275 A 1 
HETATM 24 S SB CBD . . . D 3 22.026 26.095 34.008 0.86 53.81 ? SB CBD 1275 A 1 
HETATM 25 O O1B CBD . . . D 3 23.478 26.276 34.351 0.86 57.32 ? O1B CBD 1275 A 1 
HETATM 26 O O2B CBD . . . D 3 21.609 24.651 34.214 0.86 52.88 ? O2B CBD 1275 A 1 
HETATM 27 O O3B CBD . . . D 3 21.808 26.498 32.571 0.86 47.74 ? O3B CBD 1275 A 1 
HETATM 28 C CB2 CBD . . . D 3 21.6 27.555 36.29 0.86 52.52 ? CB2 CBD 1275 A 1 
HETATM 29 C CB3 CBD . . . D 3 20.839 28.367 37.117 0.86 51.93 ? CB3 CBD 1275 A 1 
HETATM 30 C CB4 CBD . . . D 3 19.546 28.752 36.741 0.86 47.81 ? CB4 CBD 1275 A 1 
HETATM 31 C CB5 CBD . . . D 3 19.024 28.319 35.527 0.86 45.39 ? CB5 CBD 1275 A 1 
HETATM 32 C CB6 CBD . . . D 3 19.777 27.511 34.683 0.86 46.27 ? CB6 CBD 1275 A 1 
HETATM 33 N NC CBD . . . D 3 22.956 27.153 36.649 0.86 56.08 ? NC CBD 1275 A 1 
HETATM 34 N NC1 CBD . . . D 3 23.155 28.439 38.737 0.86 62.36 ? NC1 CBD 1275 A 1 
HETATM 35 C CC2 CBD . . . D 3 23.842 28.822 39.827 0.86 64.03 ? CC2 CBD 1275 A 1 
HETATM 36 CL CL CBD . . . D 3 23.135 29.935 40.961 0.86 64.93 ? CL CBD 1275 A 1 
HETATM 37 N NC3 CBD . . . D 3 25.081 28.337 40.028 0.86 62.22 ? NC3 CBD 1275 A 1 
HETATM 38 C CC4 CBD . . . D 3 25.611 27.481 39.151 0.86 61.63 ? CC4 CBD 1275 A 1 
HETATM 39 N NC5 CBD . . . D 3 24.92 27.096 38.058 0.86 60.39 ? NC5 CBD 1275 A 1 
HETATM 40 C CC6 CBD . . . D 3 23.676 27.581 37.84 0.86 60.44 ? CC6 CBD 1275 A 1 
HETATM 41 N ND CBD . . . D 3 26.933 26.98 39.397 0.86 63.31 ? ND CBD 1275 A 1 
HETATM 42 C CD1 CBD . . . D 3 27.508 24.677 38.847 0.86 64.64 ? CD1 CBD 1275 A 1 
HETATM 43 S SD CBD . . . D 3 27.541 25.162 37.14 0.86 64.98 ? SD CBD 1275 A 1 
HETATM 44 O O1D CBD . . . D 3 28.656 24.418 36.443 0.86 62.34 ? O1D CBD 1275 A 1 
HETATM 45 O O2D CBD . . . D 3 27.795 26.651 37.041 0.86 61.51 ? O2D CBD 1275 A 1 
HETATM 46 O O3D CBD . . . D 3 26.217 24.848 36.488 0.86 63.23 ? O3D CBD 1275 A 1 
HETATM 47 C CD2 CBD . . . D 3 27.203 25.631 39.814 0.86 64.04 ? CD2 CBD 1275 A 1 
HETATM 48 C CD3 CBD . . . D 3 27.174 25.291 41.162 0.86 64.21 ? CD3 CBD 1275 A 1 
HETATM 49 C CD4 CBD . . . D 3 27.444 23.98 41.543 0.86 64.83 ? CD4 CBD 1275 A 1 
HETATM 50 C CD5 CBD . . . D 3 27.747 23.021 40.576 0.86 64.46 ? CD5 CBD 1275 A 1 
HETATM 51 C CD6 CBD . . . D 3 27.782 23.365 39.229 0.86 64.11 ? CD6 CBD 1275 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           51 
#