data_4CF8 # _model_server_result.job_id Dl0gT1NaQqklmpBrQ0PFxw _model_server_result.datetime_utc '2024-11-22 04:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1217}' # _entry.id 4CF8 # _exptl.entry_id 4CF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.531 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(3-hydroxy-3-oxopropyl)-6-[[[2-[(phenylmethyl)carbamoyl]phenyl]methylamino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CF8 _cell.length_a 70.431 _cell.length_b 70.431 _cell.length_c 66.683 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 S N N # _chem_comp.formula 'C28 H28 N2 O7' _chem_comp.formula_weight 504.531 _chem_comp.id V7H _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(3-hydroxy-3-oxopropyl)-6-[[[2-[(phenylmethyl)carbamoyl]phenyl]methylamino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 C34 V7H sing 391 n y C35 C36 V7H doub 392 n y C25 C24 V7H sing 393 n y C25 C26 V7H doub 394 n y C34 C33 V7H doub 395 n y C36 C37 V7H sing 396 n y C24 C23 V7H doub 397 n y C26 C27 V7H sing 398 n y C33 C32 V7H sing 399 n y C37 C32 V7H doub 400 n y C23 C22 V7H sing 401 n y C2 C3 V7H sing 402 n y C2 C1 V7H doub 403 n y C3 C4 V7H doub 404 n y C27 C22 V7H doub 405 n y C27 C28 V7H sing 406 n n C6 C1 V7H sing 407 n y C6 C5 V7H doub 408 n y C6 C7 V7H sing 409 n n C32 C31 V7H sing 410 n n C22 C21 V7H sing 411 n n C1 C19 V7H sing 412 n n C4 C5 V7H sing 413 n y C4 O13 V7H sing 414 n n C5 O10 V7H sing 415 n n C28 N30 V7H sing 416 n n C28 O29 V7H doub 417 n n C7 O9 V7H sing 418 n n C7 O8 V7H doub 419 n n C16 C15 V7H sing 420 n n C16 O18 V7H doub 421 n n C16 O17 V7H sing 422 n n C11 C12 V7H sing 423 n n C11 O10 V7H sing 424 n n C12 C14 V7H sing 425 n n C12 O13 V7H sing 426 n n C31 N30 V7H sing 427 n n C21 N20 V7H sing 428 n n C19 N20 V7H sing 429 n n C15 C14 V7H sing 430 n n C35 H35 V7H sing 431 n n C34 H34 V7H sing 432 n n C36 H36 V7H sing 433 n n C25 H25 V7H sing 434 n n C24 H24 V7H sing 435 n n C26 H26 V7H sing 436 n n C33 H33 V7H sing 437 n n C37 H37 V7H sing 438 n n C23 H23 V7H sing 439 n n C2 H2 V7H sing 440 n n C3 H3 V7H sing 441 n n C31 H311 V7H sing 442 n n C31 H312 V7H sing 443 n n C21 H211 V7H sing 444 n n C21 H212 V7H sing 445 n n C19 H191 V7H sing 446 n n C19 H192 V7H sing 447 n n N30 H30 V7H sing 448 n n O9 H9 V7H sing 449 n n C15 H151 V7H sing 450 n n C15 H152 V7H sing 451 n n O17 H17 V7H sing 452 n n C11 H111 V7H sing 453 n n C11 H112 V7H sing 454 n n C12 H12 V7H sing 455 n n C14 H141 V7H sing 456 n n C14 H142 V7H sing 457 n n N20 H20 V7H sing 458 n n # _atom_sites.entry_id 4CF8 _atom_sites.fract_transf_matrix[1][1] 0.014198 _atom_sites.fract_transf_matrix[1][2] 0.008197 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 3 ACY A 1 1212 1212 ACY ACY . F 3 ACY A 1 1213 1213 ACY ACY . G 4 EDO A 1 1214 1214 EDO EDO . H 5 CL A 1 1215 1215 CL CL . I 6 GOL A 1 1216 1216 GOL GOL . J 7 V7H A 1 1217 1217 V7H V7H . K 2 SO4 B 1 1210 1210 SO4 SO4 . L 2 SO4 B 1 1211 1211 SO4 SO4 . M 3 ACY B 1 1212 1212 ACY ACY . N 3 ACY B 1 1213 1213 ACY ACY . O 3 ACY B 1 1214 1214 ACY ACY . P 5 CL B 1 1215 1215 CL CL . Q 5 CL B 1 1216 1216 CL CL . R 6 GOL B 1 1217 1217 GOL GOL . S 7 V7H B 1 1218 1218 V7H V7H . T 8 HOH A 1 2001 2001 HOH HOH . T 8 HOH A 2 2002 2002 HOH HOH . T 8 HOH A 3 2003 2003 HOH HOH . T 8 HOH A 4 2004 2004 HOH HOH . T 8 HOH A 5 2005 2005 HOH HOH . T 8 HOH A 6 2006 2006 HOH HOH . T 8 HOH A 7 2007 2007 HOH HOH . T 8 HOH A 8 2008 2008 HOH HOH . T 8 HOH A 9 2009 2009 HOH HOH . T 8 HOH A 10 2010 2010 HOH HOH . T 8 HOH A 11 2011 2011 HOH HOH . T 8 HOH A 12 2012 2012 HOH HOH . T 8 HOH A 13 2013 2013 HOH HOH . T 8 HOH A 14 2014 2014 HOH HOH . T 8 HOH A 15 2015 2015 HOH HOH . T 8 HOH A 16 2016 2016 HOH HOH . T 8 HOH A 17 2017 2017 HOH HOH . T 8 HOH A 18 2018 2018 HOH HOH . T 8 HOH A 19 2019 2019 HOH HOH . T 8 HOH A 20 2020 2020 HOH HOH . T 8 HOH A 21 2021 2021 HOH HOH . T 8 HOH A 22 2022 2022 HOH HOH . T 8 HOH A 23 2023 2023 HOH HOH . T 8 HOH A 24 2024 2024 HOH HOH . T 8 HOH A 25 2025 2025 HOH HOH . T 8 HOH A 26 2026 2026 HOH HOH . T 8 HOH A 27 2027 2027 HOH HOH . T 8 HOH A 28 2028 2028 HOH HOH . T 8 HOH A 29 2029 2029 HOH HOH . T 8 HOH A 30 2030 2030 HOH HOH . T 8 HOH A 31 2031 2031 HOH HOH . T 8 HOH A 32 2032 2032 HOH HOH . T 8 HOH A 33 2033 2033 HOH HOH . T 8 HOH A 34 2034 2034 HOH HOH . T 8 HOH A 35 2035 2035 HOH HOH . T 8 HOH A 36 2036 2036 HOH HOH . T 8 HOH A 37 2037 2037 HOH HOH . T 8 HOH A 38 2038 2038 HOH HOH . T 8 HOH A 39 2039 2039 HOH HOH . T 8 HOH A 40 2040 2040 HOH HOH . T 8 HOH A 41 2041 2041 HOH HOH . T 8 HOH A 42 2042 2042 HOH HOH . T 8 HOH A 43 2043 2043 HOH HOH . T 8 HOH A 44 2044 2044 HOH HOH . T 8 HOH A 45 2045 2045 HOH HOH . T 8 HOH A 46 2046 2046 HOH HOH . T 8 HOH A 47 2047 2047 HOH HOH . T 8 HOH A 48 2048 2048 HOH HOH . T 8 HOH A 49 2049 2049 HOH HOH . T 8 HOH A 50 2050 2050 HOH HOH . T 8 HOH A 51 2051 2051 HOH HOH . T 8 HOH A 52 2052 2052 HOH HOH . T 8 HOH A 53 2053 2053 HOH HOH . T 8 HOH A 54 2054 2054 HOH HOH . T 8 HOH A 55 2055 2055 HOH HOH . T 8 HOH A 56 2056 2056 HOH HOH . T 8 HOH A 57 2057 2057 HOH HOH . T 8 HOH A 58 2058 2058 HOH HOH . T 8 HOH A 59 2059 2059 HOH HOH . T 8 HOH A 60 2060 2060 HOH HOH . T 8 HOH A 61 2061 2061 HOH HOH . T 8 HOH A 62 2062 2062 HOH HOH . T 8 HOH A 63 2063 2063 HOH HOH . T 8 HOH A 64 2064 2064 HOH HOH . T 8 HOH A 65 2065 2065 HOH HOH . T 8 HOH A 66 2066 2066 HOH HOH . T 8 HOH A 67 2067 2067 HOH HOH . T 8 HOH A 68 2068 2068 HOH HOH . T 8 HOH A 69 2069 2069 HOH HOH . T 8 HOH A 70 2070 2070 HOH HOH . T 8 HOH A 71 2071 2071 HOH HOH . T 8 HOH A 72 2072 2072 HOH HOH . T 8 HOH A 73 2073 2073 HOH HOH . T 8 HOH A 74 2074 2074 HOH HOH . T 8 HOH A 75 2075 2075 HOH HOH . T 8 HOH A 76 2076 2076 HOH HOH . T 8 HOH A 77 2077 2077 HOH HOH . T 8 HOH A 78 2078 2078 HOH HOH . T 8 HOH A 79 2079 2079 HOH HOH . T 8 HOH A 80 2080 2080 HOH HOH . U 8 HOH B 1 2001 2001 HOH HOH . U 8 HOH B 2 2002 2002 HOH HOH . U 8 HOH B 3 2003 2003 HOH HOH . U 8 HOH B 4 2004 2004 HOH HOH . U 8 HOH B 5 2005 2005 HOH HOH . U 8 HOH B 6 2006 2006 HOH HOH . U 8 HOH B 7 2007 2007 HOH HOH . U 8 HOH B 8 2008 2008 HOH HOH . U 8 HOH B 9 2009 2009 HOH HOH . U 8 HOH B 10 2010 2010 HOH HOH . U 8 HOH B 11 2011 2011 HOH HOH . U 8 HOH B 12 2012 2012 HOH HOH . U 8 HOH B 13 2013 2013 HOH HOH . U 8 HOH B 14 2014 2014 HOH HOH . U 8 HOH B 15 2015 2015 HOH HOH . U 8 HOH B 16 2016 2016 HOH HOH . U 8 HOH B 17 2017 2017 HOH HOH . U 8 HOH B 18 2018 2018 HOH HOH . U 8 HOH B 19 2019 2019 HOH HOH . U 8 HOH B 20 2020 2020 HOH HOH . U 8 HOH B 21 2021 2021 HOH HOH . U 8 HOH B 22 2022 2022 HOH HOH . U 8 HOH B 23 2023 2023 HOH HOH . U 8 HOH B 24 2024 2024 HOH HOH . U 8 HOH B 25 2025 2025 HOH HOH . U 8 HOH B 26 2026 2026 HOH HOH . U 8 HOH B 27 2027 2027 HOH HOH . U 8 HOH B 28 2028 2028 HOH HOH . U 8 HOH B 29 2029 2029 HOH HOH . U 8 HOH B 30 2030 2030 HOH HOH . U 8 HOH B 31 2031 2031 HOH HOH . U 8 HOH B 32 2032 2032 HOH HOH . U 8 HOH B 33 2033 2033 HOH HOH . U 8 HOH B 34 2034 2034 HOH HOH . U 8 HOH B 35 2035 2035 HOH HOH . U 8 HOH B 36 2036 2036 HOH HOH . U 8 HOH B 37 2037 2037 HOH HOH . U 8 HOH B 38 2038 2038 HOH HOH . U 8 HOH B 39 2039 2039 HOH HOH . U 8 HOH B 40 2040 2040 HOH HOH . U 8 HOH B 41 2041 2041 HOH HOH . U 8 HOH B 42 2042 2042 HOH HOH . U 8 HOH B 43 2043 2043 HOH HOH . U 8 HOH B 44 2044 2044 HOH HOH . U 8 HOH B 45 2045 2045 HOH HOH . U 8 HOH B 46 2046 2046 HOH HOH . U 8 HOH B 47 2047 2047 HOH HOH . U 8 HOH B 48 2048 2048 HOH HOH . U 8 HOH B 49 2049 2049 HOH HOH . U 8 HOH B 50 2050 2050 HOH HOH . U 8 HOH B 51 2051 2051 HOH HOH . U 8 HOH B 52 2052 2052 HOH HOH . U 8 HOH B 53 2053 2053 HOH HOH . U 8 HOH B 54 2054 2054 HOH HOH . U 8 HOH B 55 2055 2055 HOH HOH . U 8 HOH B 56 2056 2056 HOH HOH . U 8 HOH B 57 2057 2057 HOH HOH . U 8 HOH B 58 2058 2058 HOH HOH . U 8 HOH B 59 2059 2059 HOH HOH . U 8 HOH B 60 2060 2060 HOH HOH . U 8 HOH B 61 2061 2061 HOH HOH . U 8 HOH B 62 2062 2062 HOH HOH . U 8 HOH B 63 2063 2063 HOH HOH . U 8 HOH B 64 2064 2064 HOH HOH . U 8 HOH B 65 2065 2065 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C35 V7H . . . J 7 5.279 33.973 0.717 1 24.43 ? C35 V7H 1217 A 1 HETATM 2 C C25 V7H . . . J 7 10.935 35.534 -5.648 1 31.49 ? C25 V7H 1217 A 1 HETATM 3 C C34 V7H . . . J 7 4.709 33.712 -0.507 1 25.47 ? C34 V7H 1217 A 1 HETATM 4 C C36 V7H . . . J 7 6.159 35.021 0.863 1 24.64 ? C36 V7H 1217 A 1 HETATM 5 C C24 V7H . . . J 7 11.996 35.071 -4.903 1 30.43 ? C24 V7H 1217 A 1 HETATM 6 C C26 V7H . . . J 7 9.828 36.059 -5.02 1 31.07 ? C26 V7H 1217 A 1 HETATM 7 C C33 V7H . . . J 7 5.027 34.502 -1.585 1 25.18 ? C33 V7H 1217 A 1 HETATM 8 C C37 V7H . . . J 7 6.476 35.811 -0.217 1 25.62 ? C37 V7H 1217 A 1 HETATM 9 C C23 V7H . . . J 7 11.95 35.133 -3.527 1 29.9 ? C23 V7H 1217 A 1 HETATM 10 C C2 V7H . . . J 7 9.14 32.695 1.429 1 20.08 ? C2 V7H 1217 A 1 HETATM 11 C C3 V7H . . . J 7 9.278 31.755 2.424 1 18.85 ? C3 V7H 1217 A 1 HETATM 12 C C27 V7H . . . J 7 9.796 36.112 -3.645 1 31.17 ? C27 V7H 1217 A 1 HETATM 13 C C6 V7H . . . J 7 10.532 31.398 -0.022 1 18.85 ? C6 V7H 1217 A 1 HETATM 14 C C32 V7H . . . J 7 5.907 35.547 -1.44 1 26.55 ? C32 V7H 1217 A 1 HETATM 15 C C22 V7H . . . J 7 10.848 35.653 -2.884 1 29.19 ? C22 V7H 1217 A 1 HETATM 16 C C1 V7H . . . J 7 9.755 32.52 0.208 1 20.83 ? C1 V7H 1217 A 1 HETATM 17 C C4 V7H . . . J 7 10.047 30.639 2.199 1 18.26 ? C4 V7H 1217 A 1 HETATM 18 C C5 V7H . . . J 7 10.667 30.454 0.981 1 18.36 ? C5 V7H 1217 A 1 HETATM 19 C C28 V7H . . . J 7 8.611 36.674 -2.993 1 32.26 ? C28 V7H 1217 A 1 HETATM 20 C C7 V7H . . . J 7 11.198 31.189 -1.332 1 19.25 ? C7 V7H 1217 A 1 HETATM 21 C C16 V7H . . . J 7 12.439 28.63 5.909 1 23.97 ? C16 V7H 1217 A 1 HETATM 22 C C11 V7H . . . J 7 11.216 28.322 1.69 1 18.87 ? C11 V7H 1217 A 1 HETATM 23 C C12 V7H . . . J 7 11.268 28.897 3.076 1 19.24 ? C12 V7H 1217 A 1 HETATM 24 C C31 V7H . . . J 7 6.232 36.389 -2.618 1 29.91 ? C31 V7H 1217 A 1 HETATM 25 C C21 V7H . . . J 7 10.833 35.702 -1.392 1 28.62 ? C21 V7H 1217 A 1 HETATM 26 C C19 V7H . . . J 7 9.582 33.588 -0.817 1 22.93 ? C19 V7H 1217 A 1 HETATM 27 C C15 V7H . . . J 7 11.05 28.191 5.489 1 21.86 ? C15 V7H 1217 A 1 HETATM 28 C C14 V7H . . . J 7 11.171 27.739 4.045 1 20.63 ? C14 V7H 1217 A 1 HETATM 29 N N30 V7H . . . J 7 7.46 35.969 -3.234 1 31.47 ? N30 V7H 1217 A 1 HETATM 30 N N20 V7H . . . J 7 10.856 34.357 -0.772 1 25.8 ? N20 V7H 1217 A 1 HETATM 31 O O9 V7H . . . J 7 11.09 30.04 -1.843 1 17.78 ? O9 V7H 1217 A 1 HETATM 32 O O18 V7H . . . J 7 12.455 29.675 6.619 1 23.71 ? O18 V7H 1217 A 1 HETATM 33 O O29 V7H . . . J 7 8.716 37.683 -2.31 1 34.2 ? O29 V7H 1217 A 1 HETATM 34 O O8 V7H . . . J 7 11.786 32.166 -1.869 1 19.25 ? O8 V7H 1217 A 1 HETATM 35 O O17 V7H . . . J 7 13.404 27.913 5.527 1 27.28 ? O17 V7H 1217 A 1 HETATM 36 O O10 V7H . . . J 7 11.453 29.341 0.73 1 17.93 ? O10 V7H 1217 A 1 HETATM 37 O O13 V7H . . . J 7 10.14 29.739 3.242 1 18.17 ? O13 V7H 1217 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #