data_4CF9
#
_model_server_result.job_id            vshaSA3S6-_cx9jBXGQXRw 
_model_server_result.datetime_utc      '2024-11-09 01:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cf9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1214}' 
#
_entry.id    4CF9 
#
_exptl.entry_id    4CF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              396.39 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3R)-3-(3-hydroxy-3-oxopropyl)-6-[(E)-[(2R)-2-oxidanyl-2,3-dihydroinden-1-ylidene]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CF9 
_cell.length_a            69.869 
_cell.length_b            69.869 
_cell.length_c            65.382 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 M N N 
#
_chem_comp.formula           'C22 H20 O7' 
_chem_comp.formula_weight    396.39 
_chem_comp.id                5EY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3R)-3-(3-hydroxy-3-oxopropyl)-6-[(E)-[(2R)-2-oxidanyl-2,3-dihydroinden-1-ylidene]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C2 5EY sing 1 n y 
C3 C4 5EY doub 2 n y 
C2 C1 5EY doub 3 n y 
C4 C5 5EY sing 4 n y 
C12 C13 5EY doub 5 n y 
C12 C11 5EY sing 6 n y 
C1 C6 5EY sing 7 n y 
C13 C14 5EY sing 8 n y 
C5 C6 5EY doub 9 n y 
C5 C9 5EY sing 10 n n 
C11 C16 5EY doub 11 n y 
C11 C10 5EY sing 12 n n 
C16 C15 5EY sing 13 n y 
C16 C17 5EY sing 14 n n 
C6 C7 5EY sing 15 n n 
C14 C15 5EY doub 16 n y 
C14 O23 5EY sing 17 n n 
C15 O20 5EY sing 18 n n 
C9 C10 5EY doub 19 e n 
C9 C8 5EY sing 20 n n 
C17 O19 5EY sing 21 n n 
C17 O18 5EY doub 22 n n 
C26 C25 5EY sing 23 n n 
C26 O28 5EY sing 24 n n 
C26 O27 5EY doub 25 n n 
C7 C8 5EY sing 26 n n 
C22 C21 5EY sing 27 n n 
C22 O23 5EY sing 28 n n 
C8 O29 5EY sing 29 n n 
C21 C24 5EY sing 30 n n 
C21 O20 5EY sing 31 n n 
C25 C24 5EY sing 32 n n 
C3 H3 5EY sing 33 n n 
C2 HA 5EY sing 34 n n 
C4 H4 5EY sing 35 n n 
C1 H1 5EY sing 36 n n 
C13 H13 5EY sing 37 n n 
C10 H10 5EY sing 38 n n 
C7 H71C 5EY sing 39 n n 
C7 H72C 5EY sing 40 n n 
C8 H8 5EY sing 41 n n 
O19 H19 5EY sing 42 n n 
C25 H251 5EY sing 43 n n 
C25 H252 5EY sing 44 n n 
O28 H28 5EY sing 45 n n 
C21 H21 5EY sing 46 n n 
O29 H29 5EY sing 47 n n 
C24 H241 5EY sing 48 n n 
C24 H242 5EY sing 49 n n 
C22 H22A 5EY sing 50 n n 
C12 H12 5EY sing 51 n n 
C22 H22B 5EY sing 52 n n 
#
_atom_sites.entry_id                     4CF9 
_atom_sites.fract_transf_matrix[1][1]    0.014312 
_atom_sites.fract_transf_matrix[1][2]    0.008263 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016527 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1210 1210 SO4 SO4 . 
D 2 SO4 A 1 1211 1211 SO4 SO4 . 
E 2 SO4 A 1 1212 1212 SO4 SO4 . 
F 3 EDO A 1 1213 1213 EDO EDO . 
G 4 5EY A 1 1214 1214 5EY 5EY . 
H 5 EE2 A 1 1215 1215 EE2 EE2 . 
I 2 SO4 B 1 1210 1210 SO4 SO4 . 
J 2 SO4 B 1 1211 1211 SO4 SO4 . 
K 2 SO4 B 1 1212 1212 SO4 SO4 . 
L 6 ACT B 1 1213 1213 ACT ACT . 
M 4 5EY B 1 1214 1214 5EY 5EY . 
N 5 EE2 B 1 1215 1215 EE2 EE2 . 
O 7 HOH A 1 2001 2001 HOH HOH . 
O 7 HOH A 2 2002 2002 HOH HOH . 
O 7 HOH A 3 2003 2003 HOH HOH . 
O 7 HOH A 4 2004 2004 HOH HOH . 
O 7 HOH A 5 2005 2005 HOH HOH . 
O 7 HOH A 6 2006 2006 HOH HOH . 
O 7 HOH A 7 2007 2007 HOH HOH . 
O 7 HOH A 8 2008 2008 HOH HOH . 
O 7 HOH A 9 2009 2009 HOH HOH . 
O 7 HOH A 10 2010 2010 HOH HOH . 
O 7 HOH A 11 2011 2011 HOH HOH . 
O 7 HOH A 12 2012 2012 HOH HOH . 
O 7 HOH A 13 2013 2013 HOH HOH . 
O 7 HOH A 14 2014 2014 HOH HOH . 
O 7 HOH A 15 2015 2015 HOH HOH . 
O 7 HOH A 16 2016 2016 HOH HOH . 
O 7 HOH A 17 2017 2017 HOH HOH . 
O 7 HOH A 18 2018 2018 HOH HOH . 
O 7 HOH A 19 2019 2019 HOH HOH . 
O 7 HOH A 20 2020 2020 HOH HOH . 
O 7 HOH A 21 2021 2021 HOH HOH . 
O 7 HOH A 22 2022 2022 HOH HOH . 
O 7 HOH A 23 2023 2023 HOH HOH . 
O 7 HOH A 24 2024 2024 HOH HOH . 
O 7 HOH A 25 2025 2025 HOH HOH . 
O 7 HOH A 26 2026 2026 HOH HOH . 
O 7 HOH A 27 2027 2027 HOH HOH . 
O 7 HOH A 28 2028 2028 HOH HOH . 
O 7 HOH A 29 2029 2029 HOH HOH . 
O 7 HOH A 30 2030 2030 HOH HOH . 
O 7 HOH A 31 2031 2031 HOH HOH . 
O 7 HOH A 32 2032 2032 HOH HOH . 
O 7 HOH A 33 2033 2033 HOH HOH . 
O 7 HOH A 34 2034 2034 HOH HOH . 
O 7 HOH A 35 2035 2035 HOH HOH . 
O 7 HOH A 36 2036 2036 HOH HOH . 
O 7 HOH A 37 2037 2037 HOH HOH . 
O 7 HOH A 38 2038 2038 HOH HOH . 
O 7 HOH A 39 2039 2039 HOH HOH . 
O 7 HOH A 40 2040 2040 HOH HOH . 
O 7 HOH A 41 2041 2041 HOH HOH . 
P 7 HOH B 1 2001 2001 HOH HOH . 
P 7 HOH B 2 2002 2002 HOH HOH . 
P 7 HOH B 3 2003 2003 HOH HOH . 
P 7 HOH B 4 2004 2004 HOH HOH . 
P 7 HOH B 5 2005 2005 HOH HOH . 
P 7 HOH B 6 2006 2006 HOH HOH . 
P 7 HOH B 7 2007 2007 HOH HOH . 
P 7 HOH B 8 2008 2008 HOH HOH . 
P 7 HOH B 9 2009 2009 HOH HOH . 
P 7 HOH B 10 2010 2010 HOH HOH . 
P 7 HOH B 11 2011 2011 HOH HOH . 
P 7 HOH B 12 2012 2012 HOH HOH . 
P 7 HOH B 13 2013 2013 HOH HOH . 
P 7 HOH B 14 2014 2014 HOH HOH . 
P 7 HOH B 15 2015 2015 HOH HOH . 
P 7 HOH B 16 2016 2016 HOH HOH . 
P 7 HOH B 17 2017 2017 HOH HOH . 
P 7 HOH B 18 2018 2018 HOH HOH . 
P 7 HOH B 19 2019 2019 HOH HOH . 
P 7 HOH B 20 2020 2020 HOH HOH . 
P 7 HOH B 21 2021 2021 HOH HOH . 
P 7 HOH B 22 2022 2022 HOH HOH . 
P 7 HOH B 23 2023 2023 HOH HOH . 
P 7 HOH B 24 2024 2024 HOH HOH . 
P 7 HOH B 25 2025 2025 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 5EY . A . M 4 9.755 -40.719 12.141 0.5 29.23 ? C3 5EY 1214 B 1 
HETATM 2 C C2 5EY . A . M 4 8.615 -40.221 12.734 0.5 29.5 ? C2 5EY 1214 B 1 
HETATM 3 C C4 5EY . A . M 4 10.236 -41.969 12.467 0.5 29.06 ? C4 5EY 1214 B 1 
HETATM 4 C C12 5EY . A . M 4 11.16 -44.25 11.26 0.5 31.48 ? C12 5EY 1214 B 1 
HETATM 5 C C1 5EY . A . M 4 7.933 -40.97 13.664 0.5 29.63 ? C1 5EY 1214 B 1 
HETATM 6 C C13 5EY . A . M 4 11.999 -44.022 10.2 0.5 33.15 ? C13 5EY 1214 B 1 
HETATM 7 C C5 5EY . A . M 4 9.542 -42.703 13.396 0.5 29.86 ? C5 5EY 1214 B 1 
HETATM 8 C C11 5EY . A . M 4 11.674 -44.654 12.467 0.5 30.58 ? C11 5EY 1214 B 1 
HETATM 9 C C16 5EY . A . M 4 13.031 -44.845 12.627 0.5 30.91 ? C16 5EY 1214 B 1 
HETATM 10 C C6 5EY . A . M 4 8.414 -42.213 13.982 0.5 30.39 ? C6 5EY 1214 B 1 
HETATM 11 C C14 5EY . A . M 4 13.349 -44.204 10.36 0.5 33.77 ? C14 5EY 1214 B 1 
HETATM 12 C C15 5EY . A . M 4 13.87 -44.614 11.561 0.5 33.67 ? C15 5EY 1214 B 1 
HETATM 13 C C9 5EY . A . M 4 9.807 -44.021 13.927 0.5 30.13 ? C9 5EY 1214 B 1 
HETATM 14 C C10 5EY . A . M 4 10.745 -44.895 13.549 0.5 30.53 ? C10 5EY 1214 B 1 
HETATM 15 C C17 5EY . A . M 4 13.594 -45.28 13.917 0.5 28.81 ? C17 5EY 1214 B 1 
HETATM 16 C C26 5EY . A . M 4 18.923 -44.711 10.98 0.5 46.99 ? C26 5EY 1214 B 1 
HETATM 17 C C7 5EY . A . M 4 7.817 -43.159 14.96 0.5 31.1 ? C7 5EY 1214 B 1 
HETATM 18 C C22 5EY . A . M 4 14.994 -45.106 9.303 0.5 37.99 ? C22 5EY 1214 B 1 
HETATM 19 C C8 5EY . A . M 4 8.834 -44.282 15.016 0.5 30.68 ? C8 5EY 1214 B 1 
HETATM 20 C C21 5EY . A . M 4 15.887 -45.032 10.506 0.5 39.07 ? C21 5EY 1214 B 1 
HETATM 21 C C25 5EY . A . M 4 17.692 -44.074 11.584 0.5 43.64 ? C25 5EY 1214 B 1 
HETATM 22 C C24 5EY . A . M 4 16.846 -43.892 10.367 0.5 40.59 ? C24 5EY 1214 B 1 
HETATM 23 O O19 5EY . A . M 4 14.493 -44.548 14.413 0.5 27.4 ? O19 5EY 1214 B 1 
HETATM 24 O O28 5EY . A . M 4 19.157 -44.354 9.791 0.5 50.01 ? O28 5EY 1214 B 1 
HETATM 25 O O18 5EY . A . M 4 13.128 -46.337 14.416 0.5 27.82 ? O18 5EY 1214 B 1 
HETATM 26 O O27 5EY . A . M 4 19.549 -45.503 11.738 0.5 45.58 ? O27 5EY 1214 B 1 
HETATM 27 O O23 5EY . A . M 4 14.164 -43.967 9.293 0.5 36.34 ? O23 5EY 1214 B 1 
HETATM 28 O O20 5EY . A . M 4 15.224 -44.804 11.749 0.5 37.37 ? O20 5EY 1214 B 1 
HETATM 29 O O29 5EY . A . M 4 8.178 -45.52 14.788 0.5 29.86 ? O29 5EY 1214 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#