data_4CF9 # _model_server_result.job_id n0-KlTZzCgsAI2Hieaq2bg _model_server_result.datetime_utc '2024-11-22 05:12:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1215}' # _entry.id 4CF9 # _exptl.entry_id 4CF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.39 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-(3-hydroxy-3-oxopropyl)-6-[(E)-[(2S)-2-oxidanyl-2,3-dihydroinden-1-ylidene]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CF9 _cell.length_a 69.869 _cell.length_b 69.869 _cell.length_c 65.382 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 N N N # _chem_comp.formula 'C22 H20 O7' _chem_comp.formula_weight 396.39 _chem_comp.id EE2 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-(3-hydroxy-3-oxopropyl)-6-[(E)-[(2S)-2-oxidanyl-2,3-dihydroinden-1-ylidene]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EE2 sing 150 n y C1 C3 EE2 doub 151 n y C2 C5 EE2 doub 152 n y C3 C7 EE2 sing 153 n y C4 C6 EE2 doub 154 n y C4 C8 EE2 sing 155 n y C5 C10 EE2 sing 156 n y C6 C11 EE2 sing 157 n y C7 C10 EE2 doub 158 n y C7 C13 EE2 sing 159 n n C8 C9 EE2 doub 160 n y C8 C14 EE2 sing 161 n n C9 C12 EE2 sing 162 n y C9 C15 EE2 sing 163 n n C10 C17 EE2 sing 164 n n C11 C12 EE2 doub 165 n y C11 O28 EE2 sing 166 n n C12 O27 EE2 sing 167 n n C13 C14 EE2 doub 168 e n C13 C19 EE2 sing 169 n n C15 O23 EE2 sing 170 n n C15 O25 EE2 doub 171 n n C16 C21 EE2 sing 172 n n C16 O24 EE2 doub 173 n n C16 O26 EE2 sing 174 n n C17 C19 EE2 sing 175 n n C18 C20 EE2 sing 176 n n C18 O27 EE2 sing 177 n n C19 O29 EE2 sing 178 n n C20 C22 EE2 sing 179 n n C20 O28 EE2 sing 180 n n C21 C22 EE2 sing 181 n n C1 H1 EE2 sing 182 n n C2 H2 EE2 sing 183 n n C3 H3 EE2 sing 184 n n C5 H5 EE2 sing 185 n n C4 H4 EE2 sing 186 n n C6 H6 EE2 sing 187 n n C14 H14 EE2 sing 188 n n C17 H171 EE2 sing 189 n n C17 H172 EE2 sing 190 n n C19 H19 EE2 sing 191 n n O23 H23 EE2 sing 192 n n C21 H211 EE2 sing 193 n n C21 H212 EE2 sing 194 n n O26 H26 EE2 sing 195 n n C18 H181 EE2 sing 196 n n C18 H182 EE2 sing 197 n n O29 H29 EE2 sing 198 n n C22 H221 EE2 sing 199 n n C22 H222 EE2 sing 200 n n C20 H20 EE2 sing 201 n n # _atom_sites.entry_id 4CF9 _atom_sites.fract_transf_matrix[1][1] 0.014312 _atom_sites.fract_transf_matrix[1][2] 0.008263 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 EDO A 1 1213 1213 EDO EDO . G 4 5EY A 1 1214 1214 5EY 5EY . H 5 EE2 A 1 1215 1215 EE2 EE2 . I 2 SO4 B 1 1210 1210 SO4 SO4 . J 2 SO4 B 1 1211 1211 SO4 SO4 . K 2 SO4 B 1 1212 1212 SO4 SO4 . L 6 ACT B 1 1213 1213 ACT ACT . M 4 5EY B 1 1214 1214 5EY 5EY . N 5 EE2 B 1 1215 1215 EE2 EE2 . O 7 HOH A 1 2001 2001 HOH HOH . O 7 HOH A 2 2002 2002 HOH HOH . O 7 HOH A 3 2003 2003 HOH HOH . O 7 HOH A 4 2004 2004 HOH HOH . O 7 HOH A 5 2005 2005 HOH HOH . O 7 HOH A 6 2006 2006 HOH HOH . O 7 HOH A 7 2007 2007 HOH HOH . O 7 HOH A 8 2008 2008 HOH HOH . O 7 HOH A 9 2009 2009 HOH HOH . O 7 HOH A 10 2010 2010 HOH HOH . O 7 HOH A 11 2011 2011 HOH HOH . O 7 HOH A 12 2012 2012 HOH HOH . O 7 HOH A 13 2013 2013 HOH HOH . O 7 HOH A 14 2014 2014 HOH HOH . O 7 HOH A 15 2015 2015 HOH HOH . O 7 HOH A 16 2016 2016 HOH HOH . O 7 HOH A 17 2017 2017 HOH HOH . O 7 HOH A 18 2018 2018 HOH HOH . O 7 HOH A 19 2019 2019 HOH HOH . O 7 HOH A 20 2020 2020 HOH HOH . O 7 HOH A 21 2021 2021 HOH HOH . O 7 HOH A 22 2022 2022 HOH HOH . O 7 HOH A 23 2023 2023 HOH HOH . O 7 HOH A 24 2024 2024 HOH HOH . O 7 HOH A 25 2025 2025 HOH HOH . O 7 HOH A 26 2026 2026 HOH HOH . O 7 HOH A 27 2027 2027 HOH HOH . O 7 HOH A 28 2028 2028 HOH HOH . O 7 HOH A 29 2029 2029 HOH HOH . O 7 HOH A 30 2030 2030 HOH HOH . O 7 HOH A 31 2031 2031 HOH HOH . O 7 HOH A 32 2032 2032 HOH HOH . O 7 HOH A 33 2033 2033 HOH HOH . O 7 HOH A 34 2034 2034 HOH HOH . O 7 HOH A 35 2035 2035 HOH HOH . O 7 HOH A 36 2036 2036 HOH HOH . O 7 HOH A 37 2037 2037 HOH HOH . O 7 HOH A 38 2038 2038 HOH HOH . O 7 HOH A 39 2039 2039 HOH HOH . O 7 HOH A 40 2040 2040 HOH HOH . O 7 HOH A 41 2041 2041 HOH HOH . P 7 HOH B 1 2001 2001 HOH HOH . P 7 HOH B 2 2002 2002 HOH HOH . P 7 HOH B 3 2003 2003 HOH HOH . P 7 HOH B 4 2004 2004 HOH HOH . P 7 HOH B 5 2005 2005 HOH HOH . P 7 HOH B 6 2006 2006 HOH HOH . P 7 HOH B 7 2007 2007 HOH HOH . P 7 HOH B 8 2008 2008 HOH HOH . P 7 HOH B 9 2009 2009 HOH HOH . P 7 HOH B 10 2010 2010 HOH HOH . P 7 HOH B 11 2011 2011 HOH HOH . P 7 HOH B 12 2012 2012 HOH HOH . P 7 HOH B 13 2013 2013 HOH HOH . P 7 HOH B 14 2014 2014 HOH HOH . P 7 HOH B 15 2015 2015 HOH HOH . P 7 HOH B 16 2016 2016 HOH HOH . P 7 HOH B 17 2017 2017 HOH HOH . P 7 HOH B 18 2018 2018 HOH HOH . P 7 HOH B 19 2019 2019 HOH HOH . P 7 HOH B 20 2020 2020 HOH HOH . P 7 HOH B 21 2021 2021 HOH HOH . P 7 HOH B 22 2022 2022 HOH HOH . P 7 HOH B 23 2023 2023 HOH HOH . P 7 HOH B 24 2024 2024 HOH HOH . P 7 HOH B 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EE2 . B . H 5 30.347 -28.761 0.871 0.5 34.07 ? C1 EE2 1215 A 1 HETATM 2 C C2 EE2 . B . H 5 30.415 -27.562 0.195 0.5 34.09 ? C2 EE2 1215 A 1 HETATM 3 C C3 EE2 . B . H 5 31.254 -29.768 0.619 0.5 34.33 ? C3 EE2 1215 A 1 HETATM 4 C C4 EE2 . B . H 5 32.814 -32.007 1.775 0.5 33.82 ? C4 EE2 1215 A 1 HETATM 5 C C5 EE2 . B . H 5 31.394 -27.347 -0.744 0.5 33.99 ? C5 EE2 1215 A 1 HETATM 6 C C6 EE2 . B . H 5 32.229 -32.744 2.774 0.5 35.16 ? C6 EE2 1215 A 1 HETATM 7 C C7 EE2 . B . H 5 32.226 -29.539 -0.321 0.5 33.39 ? C7 EE2 1215 A 1 HETATM 8 C C8 EE2 . B . H 5 32.897 -32.51 0.499 0.5 33.21 ? C8 EE2 1215 A 1 HETATM 9 C C9 EE2 . B . H 5 32.411 -33.772 0.216 0.5 32.67 ? C9 EE2 1215 A 1 HETATM 10 C C10 EE2 . B . H 5 32.291 -28.353 -0.99 0.5 34.8 ? C10 EE2 1215 A 1 HETATM 11 C C11 EE2 . B . H 5 31.734 -33.99 2.492 0.5 35.85 ? C11 EE2 1215 A 1 HETATM 12 C C12 EE2 . B . H 5 31.82 -34.501 1.223 0.5 35.2 ? C12 EE2 1215 A 1 HETATM 13 C C13 EE2 . B . H 5 33.29 -30.397 -0.785 0.5 33.81 ? C13 EE2 1215 A 1 HETATM 14 C C14 EE2 . B . H 5 33.562 -31.67 -0.48 0.5 33.94 ? C14 EE2 1215 A 1 HETATM 15 C C15 EE2 . B . H 5 32.49 -34.353 -1.141 0.5 31.93 ? C15 EE2 1215 A 1 HETATM 16 C C16 EE2 . B . H 5 28.38 -37.298 5.752 0.5 41.56 ? C16 EE2 1215 A 1 HETATM 17 C C17 EE2 . B . H 5 33.409 -28.297 -1.967 0.5 35.69 ? C17 EE2 1215 A 1 HETATM 18 C C18 EE2 . B . H 5 30.093 -35.952 1.638 0.5 37.27 ? C18 EE2 1215 A 1 HETATM 19 C C19 EE2 . B . H 5 34.099 -29.634 -1.773 0.5 35.28 ? C19 EE2 1215 A 1 HETATM 20 C C20 EE2 . B . H 5 29.992 -35.358 3.027 0.5 38.07 ? C20 EE2 1215 A 1 HETATM 21 C C21 EE2 . B . H 5 28.566 -36.077 4.884 0.5 40.21 ? C21 EE2 1215 A 1 HETATM 22 C C22 EE2 . B . H 5 29.714 -36.486 3.998 0.5 38.92 ? C22 EE2 1215 A 1 HETATM 23 O O23 EE2 . B . H 5 31.397 -34.712 -1.659 0.5 29.63 ? O23 EE2 1215 A 1 HETATM 24 O O24 EE2 . B . H 5 27.249 -37.364 6.311 0.5 42.62 ? O24 EE2 1215 A 1 HETATM 25 O O25 EE2 . B . H 5 33.627 -34.442 -1.672 0.5 29.75 ? O25 EE2 1215 A 1 HETATM 26 O O26 EE2 . B . H 5 29.373 -38.075 5.801 0.5 42.31 ? O26 EE2 1215 A 1 HETATM 27 O O27 EE2 . B . H 5 31.333 -35.763 0.963 0.5 36.13 ? O27 EE2 1215 A 1 HETATM 28 O O28 EE2 . B . H 5 31.165 -34.714 3.507 0.5 38.76 ? O28 EE2 1215 A 1 HETATM 29 O O29 EE2 . B . H 5 34.155 -30.346 -2.989 0.5 35.26 ? O29 EE2 1215 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #