data_4CFA # _model_server_result.job_id 8n1DO5J7AjRxw_ubzLx4qg _model_server_result.datetime_utc '2024-11-08 04:07:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1214}' # _entry.id 4CFA # _exptl.entry_id 4CFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.493 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[methyl-[[(1S)-2-oxidanylidene-1-phenyl-2-[(phenylmethyl)amino]ethyl]carbamoyl]amino]methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CFA _cell.length_a 71.193 _cell.length_b 71.193 _cell.length_c 66.181 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 L N N # _chem_comp.formula 'C26 H25 N3 O6' _chem_comp.formula_weight 475.493 _chem_comp.id WOP _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[methyl-[[(1S)-2-oxidanylidene-1-phenyl-2-[(phenylmethyl)amino]ethyl]carbamoyl]amino]methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 WOP sing 380 n y C1 C4 WOP doub 381 n y C2 C5 WOP sing 382 n y C2 C6 WOP doub 383 n y C3 C7 WOP doub 384 n y C4 C8 WOP sing 385 n y C5 C9 WOP doub 386 n y C6 C10 WOP sing 387 n y C7 C14 WOP sing 388 n y C8 C14 WOP doub 389 n y C9 C15 WOP sing 390 n y C10 C15 WOP doub 391 n y C11 C12 WOP sing 392 n y C11 C16 WOP doub 393 n y C12 C17 WOP doub 394 n y C13 C16 WOP sing 395 n y C13 C18 WOP doub 396 n y C13 C19 WOP sing 397 n n C14 C24 WOP sing 398 n n C15 C26 WOP sing 399 n n C16 C25 WOP sing 400 n n C17 C18 WOP sing 401 n y C17 O34 WOP sing 402 n n C18 O35 WOP sing 403 n n C19 O30 WOP doub 404 n n C19 O31 WOP sing 405 n n C20 C26 WOP sing 406 n n C20 N27 WOP sing 407 n n C20 O32 WOP doub 408 n n C21 N28 WOP sing 409 n n C21 N29 WOP sing 410 n n C21 O33 WOP doub 411 n n C22 O34 WOP sing 412 n n C22 O35 WOP sing 413 n n C23 N29 WOP sing 414 n n C24 N27 WOP sing 415 n n C25 N29 WOP sing 416 n n C26 N28 WOP sing 417 n n C1 H1 WOP sing 418 n n C3 H3 WOP sing 419 n n C4 H4 WOP sing 420 n n C2 H2 WOP sing 421 n n C5 H5 WOP sing 422 n n C6 H6 WOP sing 423 n n C7 H7 WOP sing 424 n n C8 H8 WOP sing 425 n n C9 H9 WOP sing 426 n n C10 H10 WOP sing 427 n n C11 H11 WOP sing 428 n n C12 H12 WOP sing 429 n n C24 H241 WOP sing 430 n n C24 H242 WOP sing 431 n n C26 H26 WOP sing 432 n n C25 H251 WOP sing 433 n n C25 H252 WOP sing 434 n n O31 H31 WOP sing 435 n n N27 H27 WOP sing 436 n n N28 H28 WOP sing 437 n n C22 H221 WOP sing 438 n n C22 H222 WOP sing 439 n n C23 H231 WOP sing 440 n n C23 H232 WOP sing 441 n n C23 H233 WOP sing 442 n n # _atom_sites.entry_id 4CFA _atom_sites.fract_transf_matrix[1][1] 0.014046 _atom_sites.fract_transf_matrix[1][2] 0.00811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 2 SO4 A 1 1213 1213 SO4 SO4 . G 3 WOP A 1 1214 1214 WOP WOP . H 2 SO4 B 1 1210 1210 SO4 SO4 . I 2 SO4 B 1 1211 1211 SO4 SO4 . J 2 SO4 B 1 1212 1212 SO4 SO4 . K 2 SO4 B 1 1213 1213 SO4 SO4 . L 3 WOP B 1 1214 1214 WOP WOP . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . M 4 HOH A 23 2023 2023 HOH HOH . M 4 HOH A 24 2024 2024 HOH HOH . M 4 HOH A 25 2025 2025 HOH HOH . M 4 HOH A 26 2026 2026 HOH HOH . M 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH A 28 2028 2028 HOH HOH . M 4 HOH A 29 2029 2029 HOH HOH . M 4 HOH A 30 2030 2030 HOH HOH . M 4 HOH A 31 2031 2031 HOH HOH . M 4 HOH A 32 2032 2032 HOH HOH . M 4 HOH A 33 2033 2033 HOH HOH . M 4 HOH A 34 2034 2034 HOH HOH . M 4 HOH A 35 2035 2035 HOH HOH . M 4 HOH A 36 2036 2036 HOH HOH . M 4 HOH A 37 2037 2037 HOH HOH . M 4 HOH A 38 2038 2038 HOH HOH . M 4 HOH A 39 2039 2039 HOH HOH . M 4 HOH A 40 2040 2040 HOH HOH . M 4 HOH A 41 2041 2041 HOH HOH . M 4 HOH A 42 2042 2042 HOH HOH . M 4 HOH A 43 2043 2043 HOH HOH . M 4 HOH A 44 2044 2044 HOH HOH . M 4 HOH A 45 2045 2045 HOH HOH . M 4 HOH A 46 2046 2046 HOH HOH . M 4 HOH A 47 2047 2047 HOH HOH . M 4 HOH A 48 2048 2048 HOH HOH . M 4 HOH A 49 2049 2049 HOH HOH . M 4 HOH A 50 2050 2050 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . N 4 HOH B 24 2024 2024 HOH HOH . N 4 HOH B 25 2025 2025 HOH HOH . N 4 HOH B 26 2026 2026 HOH HOH . N 4 HOH B 27 2027 2027 HOH HOH . N 4 HOH B 28 2028 2028 HOH HOH . N 4 HOH B 29 2029 2029 HOH HOH . N 4 HOH B 30 2030 2030 HOH HOH . N 4 HOH B 31 2031 2031 HOH HOH . N 4 HOH B 32 2032 2032 HOH HOH . N 4 HOH B 33 2033 2033 HOH HOH . N 4 HOH B 34 2034 2034 HOH HOH . N 4 HOH B 35 2035 2035 HOH HOH . N 4 HOH B 36 2036 2036 HOH HOH . N 4 HOH B 37 2037 2037 HOH HOH . N 4 HOH B 38 2038 2038 HOH HOH . N 4 HOH B 39 2039 2039 HOH HOH . N 4 HOH B 40 2040 2040 HOH HOH . N 4 HOH B 41 2041 2041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WOP . . . G 3 12.059 -49.799 7.573 0.75 49.84 ? C1 WOP 1214 A 1 HETATM 2 C C2 WOP . . . G 3 12.563 -49.616 -0.509 0.75 47.06 ? C2 WOP 1214 A 1 HETATM 3 C C3 WOP . . . G 3 11.613 -50.44 6.436 0.75 50 ? C3 WOP 1214 A 1 HETATM 4 C C4 WOP . . . G 3 11.45 -48.637 7.995 0.75 49.01 ? C4 WOP 1214 A 1 HETATM 5 C C5 WOP . . . G 3 11.414 -49.229 -1.162 0.75 46.55 ? C5 WOP 1214 A 1 HETATM 6 C C6 WOP . . . G 3 12.639 -49.469 0.858 0.75 46.52 ? C6 WOP 1214 A 1 HETATM 7 C C7 WOP . . . G 3 10.556 -49.917 5.724 0.75 49.23 ? C7 WOP 1214 A 1 HETATM 8 C C8 WOP . . . G 3 10.393 -48.121 7.278 0.75 48.73 ? C8 WOP 1214 A 1 HETATM 9 C C9 WOP . . . G 3 10.356 -48.699 -0.459 0.75 45.71 ? C9 WOP 1214 A 1 HETATM 10 C C10 WOP . . . G 3 11.574 -48.942 1.559 0.75 45.87 ? C10 WOP 1214 A 1 HETATM 11 C C11 WOP . . . G 3 10.843 -44.153 -1.121 0.75 34.03 ? C11 WOP 1214 A 1 HETATM 12 C C12 WOP . . . G 3 11.649 -44.48 -2.18 0.75 33.82 ? C12 WOP 1214 A 1 HETATM 13 C C13 WOP . . . G 3 12.392 -45.034 0.491 0.75 33.59 ? C13 WOP 1214 A 1 HETATM 14 C C14 WOP . . . G 3 9.942 -48.755 6.141 0.75 49.19 ? C14 WOP 1214 A 1 HETATM 15 C C15 WOP . . . G 3 10.426 -48.551 0.905 0.75 45.35 ? C15 WOP 1214 A 1 HETATM 16 C C16 WOP . . . G 3 11.189 -44.414 0.193 0.75 34.29 ? C16 WOP 1214 A 1 HETATM 17 C C17 WOP . . . G 3 12.837 -45.082 -1.876 0.75 35.75 ? C17 WOP 1214 A 1 HETATM 18 C C18 WOP . . . G 3 13.2 -45.353 -0.586 0.75 35.74 ? C18 WOP 1214 A 1 HETATM 19 C C19 WOP . . . G 3 12.805 -45.332 1.894 0.75 30.95 ? C19 WOP 1214 A 1 HETATM 20 C C20 WOP . . . G 3 9.026 -48.593 2.982 0.75 46.63 ? C20 WOP 1214 A 1 HETATM 21 C C21 WOP . . . G 3 8.483 -45.752 1.006 0.75 42.63 ? C21 WOP 1214 A 1 HETATM 22 C C22 WOP . . . G 3 14.778 -45.997 -1.937 0.75 37.92 ? C22 WOP 1214 A 1 HETATM 23 C C23 WOP . . . G 3 7.994 -43.399 0.417 0.75 38.18 ? C23 WOP 1214 A 1 HETATM 24 C C24 WOP . . . G 3 8.792 -48.181 5.377 0.75 48.85 ? C24 WOP 1214 A 1 HETATM 25 C C25 WOP . . . G 3 10.214 -44.009 1.255 0.75 37.15 ? C25 WOP 1214 A 1 HETATM 26 C C26 WOP . . . G 3 9.258 -47.976 1.631 0.75 45.58 ? C26 WOP 1214 A 1 HETATM 27 N N27 WOP . . . G 3 9.183 -47.75 4.055 0.75 47.49 ? N27 WOP 1214 A 1 HETATM 28 N N28 WOP . . . G 3 9.322 -46.542 1.773 0.75 44.4 ? N28 WOP 1214 A 1 HETATM 29 N N29 WOP . . . G 3 8.877 -44.421 0.912 0.75 39.83 ? N29 WOP 1214 A 1 HETATM 30 O O30 WOP . . . G 3 14.018 -45.15 2.184 0.75 29.51 ? O30 WOP 1214 A 1 HETATM 31 O O31 WOP . . . G 3 11.912 -45.733 2.689 0.75 30.1 ? O31 WOP 1214 A 1 HETATM 32 O O32 WOP . . . G 3 8.724 -49.769 3.077 0.75 48.29 ? O32 WOP 1214 A 1 HETATM 33 O O33 WOP . . . G 3 7.484 -46.213 0.469 0.75 42.55 ? O33 WOP 1214 A 1 HETATM 34 O O34 WOP . . . G 3 13.764 -45.469 -2.806 0.75 36.9 ? O34 WOP 1214 A 1 HETATM 35 O O35 WOP . . . G 3 14.44 -45.961 -0.535 0.75 38.82 ? O35 WOP 1214 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #