data_4CFA
#
_model_server_result.job_id            3r8b7jG3I60oMlv4FgckyA 
_model_server_result.datetime_utc      '2024-11-22 04:40:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1214}' 
#
_entry.id    4CFA 
#
_exptl.entry_id    4CFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              475.493 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[[methyl-[[(1S)-2-oxidanylidene-1-phenyl-2-[(phenylmethyl)amino]ethyl]carbamoyl]amino]methyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CFA 
_cell.length_a            71.193 
_cell.length_b            71.193 
_cell.length_c            66.181 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 L N N 
#
_chem_comp.formula           'C26 H25 N3 O6' 
_chem_comp.formula_weight    475.493 
_chem_comp.id                WOP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[[methyl-[[(1S)-2-oxidanylidene-1-phenyl-2-[(phenylmethyl)amino]ethyl]carbamoyl]amino]methyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C3 WOP sing 380 n y 
C1 C4 WOP doub 381 n y 
C2 C5 WOP sing 382 n y 
C2 C6 WOP doub 383 n y 
C3 C7 WOP doub 384 n y 
C4 C8 WOP sing 385 n y 
C5 C9 WOP doub 386 n y 
C6 C10 WOP sing 387 n y 
C7 C14 WOP sing 388 n y 
C8 C14 WOP doub 389 n y 
C9 C15 WOP sing 390 n y 
C10 C15 WOP doub 391 n y 
C11 C12 WOP sing 392 n y 
C11 C16 WOP doub 393 n y 
C12 C17 WOP doub 394 n y 
C13 C16 WOP sing 395 n y 
C13 C18 WOP doub 396 n y 
C13 C19 WOP sing 397 n n 
C14 C24 WOP sing 398 n n 
C15 C26 WOP sing 399 n n 
C16 C25 WOP sing 400 n n 
C17 C18 WOP sing 401 n y 
C17 O34 WOP sing 402 n n 
C18 O35 WOP sing 403 n n 
C19 O30 WOP doub 404 n n 
C19 O31 WOP sing 405 n n 
C20 C26 WOP sing 406 n n 
C20 N27 WOP sing 407 n n 
C20 O32 WOP doub 408 n n 
C21 N28 WOP sing 409 n n 
C21 N29 WOP sing 410 n n 
C21 O33 WOP doub 411 n n 
C22 O34 WOP sing 412 n n 
C22 O35 WOP sing 413 n n 
C23 N29 WOP sing 414 n n 
C24 N27 WOP sing 415 n n 
C25 N29 WOP sing 416 n n 
C26 N28 WOP sing 417 n n 
C1 H1 WOP sing 418 n n 
C3 H3 WOP sing 419 n n 
C4 H4 WOP sing 420 n n 
C2 H2 WOP sing 421 n n 
C5 H5 WOP sing 422 n n 
C6 H6 WOP sing 423 n n 
C7 H7 WOP sing 424 n n 
C8 H8 WOP sing 425 n n 
C9 H9 WOP sing 426 n n 
C10 H10 WOP sing 427 n n 
C11 H11 WOP sing 428 n n 
C12 H12 WOP sing 429 n n 
C24 H241 WOP sing 430 n n 
C24 H242 WOP sing 431 n n 
C26 H26 WOP sing 432 n n 
C25 H251 WOP sing 433 n n 
C25 H252 WOP sing 434 n n 
O31 H31 WOP sing 435 n n 
N27 H27 WOP sing 436 n n 
N28 H28 WOP sing 437 n n 
C22 H221 WOP sing 438 n n 
C22 H222 WOP sing 439 n n 
C23 H231 WOP sing 440 n n 
C23 H232 WOP sing 441 n n 
C23 H233 WOP sing 442 n n 
#
_atom_sites.entry_id                     4CFA 
_atom_sites.fract_transf_matrix[1][1]    0.014046 
_atom_sites.fract_transf_matrix[1][2]    0.00811 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01511 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1210 1210 SO4 SO4 . 
D 2 SO4 A 1 1211 1211 SO4 SO4 . 
E 2 SO4 A 1 1212 1212 SO4 SO4 . 
F 2 SO4 A 1 1213 1213 SO4 SO4 . 
G 3 WOP A 1 1214 1214 WOP WOP . 
H 2 SO4 B 1 1210 1210 SO4 SO4 . 
I 2 SO4 B 1 1211 1211 SO4 SO4 . 
J 2 SO4 B 1 1212 1212 SO4 SO4 . 
K 2 SO4 B 1 1213 1213 SO4 SO4 . 
L 3 WOP B 1 1214 1214 WOP WOP . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
M 4 HOH A 4 2004 2004 HOH HOH . 
M 4 HOH A 5 2005 2005 HOH HOH . 
M 4 HOH A 6 2006 2006 HOH HOH . 
M 4 HOH A 7 2007 2007 HOH HOH . 
M 4 HOH A 8 2008 2008 HOH HOH . 
M 4 HOH A 9 2009 2009 HOH HOH . 
M 4 HOH A 10 2010 2010 HOH HOH . 
M 4 HOH A 11 2011 2011 HOH HOH . 
M 4 HOH A 12 2012 2012 HOH HOH . 
M 4 HOH A 13 2013 2013 HOH HOH . 
M 4 HOH A 14 2014 2014 HOH HOH . 
M 4 HOH A 15 2015 2015 HOH HOH . 
M 4 HOH A 16 2016 2016 HOH HOH . 
M 4 HOH A 17 2017 2017 HOH HOH . 
M 4 HOH A 18 2018 2018 HOH HOH . 
M 4 HOH A 19 2019 2019 HOH HOH . 
M 4 HOH A 20 2020 2020 HOH HOH . 
M 4 HOH A 21 2021 2021 HOH HOH . 
M 4 HOH A 22 2022 2022 HOH HOH . 
M 4 HOH A 23 2023 2023 HOH HOH . 
M 4 HOH A 24 2024 2024 HOH HOH . 
M 4 HOH A 25 2025 2025 HOH HOH . 
M 4 HOH A 26 2026 2026 HOH HOH . 
M 4 HOH A 27 2027 2027 HOH HOH . 
M 4 HOH A 28 2028 2028 HOH HOH . 
M 4 HOH A 29 2029 2029 HOH HOH . 
M 4 HOH A 30 2030 2030 HOH HOH . 
M 4 HOH A 31 2031 2031 HOH HOH . 
M 4 HOH A 32 2032 2032 HOH HOH . 
M 4 HOH A 33 2033 2033 HOH HOH . 
M 4 HOH A 34 2034 2034 HOH HOH . 
M 4 HOH A 35 2035 2035 HOH HOH . 
M 4 HOH A 36 2036 2036 HOH HOH . 
M 4 HOH A 37 2037 2037 HOH HOH . 
M 4 HOH A 38 2038 2038 HOH HOH . 
M 4 HOH A 39 2039 2039 HOH HOH . 
M 4 HOH A 40 2040 2040 HOH HOH . 
M 4 HOH A 41 2041 2041 HOH HOH . 
M 4 HOH A 42 2042 2042 HOH HOH . 
M 4 HOH A 43 2043 2043 HOH HOH . 
M 4 HOH A 44 2044 2044 HOH HOH . 
M 4 HOH A 45 2045 2045 HOH HOH . 
M 4 HOH A 46 2046 2046 HOH HOH . 
M 4 HOH A 47 2047 2047 HOH HOH . 
M 4 HOH A 48 2048 2048 HOH HOH . 
M 4 HOH A 49 2049 2049 HOH HOH . 
M 4 HOH A 50 2050 2050 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
N 4 HOH B 5 2005 2005 HOH HOH . 
N 4 HOH B 6 2006 2006 HOH HOH . 
N 4 HOH B 7 2007 2007 HOH HOH . 
N 4 HOH B 8 2008 2008 HOH HOH . 
N 4 HOH B 9 2009 2009 HOH HOH . 
N 4 HOH B 10 2010 2010 HOH HOH . 
N 4 HOH B 11 2011 2011 HOH HOH . 
N 4 HOH B 12 2012 2012 HOH HOH . 
N 4 HOH B 13 2013 2013 HOH HOH . 
N 4 HOH B 14 2014 2014 HOH HOH . 
N 4 HOH B 15 2015 2015 HOH HOH . 
N 4 HOH B 16 2016 2016 HOH HOH . 
N 4 HOH B 17 2017 2017 HOH HOH . 
N 4 HOH B 18 2018 2018 HOH HOH . 
N 4 HOH B 19 2019 2019 HOH HOH . 
N 4 HOH B 20 2020 2020 HOH HOH . 
N 4 HOH B 21 2021 2021 HOH HOH . 
N 4 HOH B 22 2022 2022 HOH HOH . 
N 4 HOH B 23 2023 2023 HOH HOH . 
N 4 HOH B 24 2024 2024 HOH HOH . 
N 4 HOH B 25 2025 2025 HOH HOH . 
N 4 HOH B 26 2026 2026 HOH HOH . 
N 4 HOH B 27 2027 2027 HOH HOH . 
N 4 HOH B 28 2028 2028 HOH HOH . 
N 4 HOH B 29 2029 2029 HOH HOH . 
N 4 HOH B 30 2030 2030 HOH HOH . 
N 4 HOH B 31 2031 2031 HOH HOH . 
N 4 HOH B 32 2032 2032 HOH HOH . 
N 4 HOH B 33 2033 2033 HOH HOH . 
N 4 HOH B 34 2034 2034 HOH HOH . 
N 4 HOH B 35 2035 2035 HOH HOH . 
N 4 HOH B 36 2036 2036 HOH HOH . 
N 4 HOH B 37 2037 2037 HOH HOH . 
N 4 HOH B 38 2038 2038 HOH HOH . 
N 4 HOH B 39 2039 2039 HOH HOH . 
N 4 HOH B 40 2040 2040 HOH HOH . 
N 4 HOH B 41 2041 2041 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 WOP . . . L 3 37.249 -35.512 -19.131 0.75 49.88 ? C1 WOP 1214 B 1 
HETATM 2 C C2 WOP . . . L 3 36.691 -35.475 -11.355 0.75 45.56 ? C2 WOP 1214 B 1 
HETATM 3 C C3 WOP . . . L 3 38.073 -35.355 -18.037 0.75 50.23 ? C3 WOP 1214 B 1 
HETATM 4 C C4 WOP . . . L 3 36.559 -34.431 -19.628 0.75 49.15 ? C4 WOP 1214 B 1 
HETATM 5 C C5 WOP . . . L 3 36.528 -35.495 -12.721 0.75 44.88 ? C5 WOP 1214 B 1 
HETATM 6 C C6 WOP . . . L 3 36.956 -34.279 -10.726 0.75 44.6 ? C6 WOP 1214 B 1 
HETATM 7 C C7 WOP . . . L 3 38.205 -34.117 -17.443 0.75 49.62 ? C7 WOP 1214 B 1 
HETATM 8 C C8 WOP . . . L 3 36.698 -33.197 -19.028 0.75 49.33 ? C8 WOP 1214 B 1 
HETATM 9 C C9 WOP . . . L 3 36.63 -34.335 -13.454 0.75 44.19 ? C9 WOP 1214 B 1 
HETATM 10 C C10 WOP . . . L 3 37.052 -33.12 -11.458 0.75 43.84 ? C10 WOP 1214 B 1 
HETATM 11 C C11 WOP . . . L 3 32.799 -31.474 -10.715 0.75 35.43 ? C11 WOP 1214 B 1 
HETATM 12 C C12 WOP . . . L 3 32.642 -32.355 -9.671 0.75 35.23 ? C12 WOP 1214 B 1 
HETATM 13 C C13 WOP . . . L 3 32.842 -33.244 -12.345 0.75 34.88 ? C13 WOP 1214 B 1 
HETATM 14 C C14 WOP . . . L 3 37.516 -33.028 -17.933 0.75 49.42 ? C14 WOP 1214 B 1 
HETATM 15 C C15 WOP . . . L 3 36.89 -33.14 -12.82 0.75 43.93 ? C15 WOP 1214 B 1 
HETATM 16 C C16 WOP . . . L 3 32.895 -31.894 -12.033 0.75 35.09 ? C16 WOP 1214 B 1 
HETATM 17 C C17 WOP . . . L 3 32.584 -33.684 -9.997 0.75 36.63 ? C17 WOP 1214 B 1 
HETATM 18 C C18 WOP . . . L 3 32.679 -34.122 -11.288 0.75 36.79 ? C18 WOP 1214 B 1 
HETATM 19 C C19 WOP . . . L 3 32.938 -33.727 -13.753 0.75 32.27 ? C19 WOP 1214 B 1 
HETATM 20 C C20 WOP . . . L 3 37.736 -32.002 -14.875 0.75 46.09 ? C20 WOP 1214 B 1 
HETATM 21 C C21 WOP . . . L 3 35.429 -30.163 -12.88 0.75 41.22 ? C21 WOP 1214 B 1 
HETATM 22 C C22 WOP . . . L 3 32.149 -35.779 -10.016 0.75 39.11 ? C22 WOP 1214 B 1 
HETATM 23 C C23 WOP . . . L 3 33.594 -28.628 -12.256 0.75 37.15 ? C23 WOP 1214 B 1 
HETATM 24 C C24 WOP . . . L 3 37.649 -31.68 -17.301 0.75 48.81 ? C24 WOP 1214 B 1 
HETATM 25 C C25 WOP . . . L 3 33.065 -30.855 -13.102 0.75 36.6 ? C25 WOP 1214 B 1 
HETATM 26 C C26 WOP . . . L 3 37.003 -31.863 -13.574 0.75 45.01 ? C26 WOP 1214 B 1 
HETATM 27 N N27 WOP . . . L 3 37.03 -31.637 -15.998 0.75 47.07 ? N27 WOP 1214 B 1 
HETATM 28 N N28 WOP . . . L 3 35.744 -31.175 -13.766 0.75 43.11 ? N28 WOP 1214 B 1 
HETATM 29 N N29 WOP . . . L 3 34.069 -29.89 -12.755 0.75 38.15 ? N29 WOP 1214 B 1 
HETATM 30 O O30 WOP . . . L 3 32.188 -34.681 -14.077 0.75 29.2 ? O30 WOP 1214 B 1 
HETATM 31 O O31 WOP . . . L 3 33.741 -33.131 -14.519 0.75 32.05 ? O31 WOP 1214 B 1 
HETATM 32 O O32 WOP . . . L 3 38.883 -32.417 -14.873 0.75 47.65 ? O32 WOP 1214 B 1 
HETATM 33 O O33 WOP . . . L 3 36.307 -29.57 -12.262 0.75 40.43 ? O33 WOP 1214 B 1 
HETATM 34 O O34 WOP . . . L 3 32.425 -34.7 -9.096 0.75 37.65 ? O34 WOP 1214 B 1 
HETATM 35 O O35 WOP . . . L 3 32.587 -35.503 -11.361 0.75 39.27 ? O35 WOP 1214 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           4 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#