data_4CFC
#
_model_server_result.job_id            O6Mqq_1HWw4jD23cYiRAlQ 
_model_server_result.datetime_utc      '2024-11-22 04:30:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cfc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1216}' 
#
_entry.id    4CFC 
#
_exptl.entry_id    4CFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              441.477 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[[[(1S)-2-(butylamino)-2-oxidanylidene-1-phenyl-ethyl]carbamoyl-methyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CFC 
_cell.length_a            71.324 
_cell.length_b            71.324 
_cell.length_c            66.442 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 P N N 
#
_chem_comp.formula           'C23 H27 N3 O6' 
_chem_comp.formula_weight    441.477 
_chem_comp.id                7NV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[[[(1S)-2-(butylamino)-2-oxidanylidene-1-phenyl-ethyl]carbamoyl-methyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C16 7NV sing 1 n y 
C15 C3 7NV doub 2 n y 
C16 C17 7NV doub 3 n y 
C17 C18 7NV sing 4 n y 
C23 C24 7NV sing 5 n y 
C23 C22 7NV doub 6 n y 
C6 C7 7NV sing 7 n n 
C6 C5 7NV sing 8 n n 
C24 C25 7NV doub 9 n y 
C9 N26 7NV sing 10 n n 
C13 C18 7NV sing 11 n n 
C13 C2 7NV sing 12 n n 
C13 N25 7NV sing 13 n n 
C30 C22 7NV sing 14 n y 
C30 C29 7NV doub 15 n y 
C30 C31 7NV sing 16 n n 
C5 C4 7NV sing 17 n n 
C18 C19 7NV doub 18 n y 
C22 C21 7NV sing 19 n n 
C25 C29 7NV sing 20 n y 
C25 O26 7NV sing 21 n n 
C29 O28 7NV sing 22 n n 
C2 N3 7NV sing 23 n n 
C2 O1 7NV doub 24 n n 
C31 O33 7NV doub 25 n n 
C31 O32 7NV sing 26 n n 
C27 O26 7NV sing 27 n n 
C27 O28 7NV sing 28 n n 
C12 O11 7NV doub 29 n n 
C12 N25 7NV sing 30 n n 
C12 N26 7NV sing 31 n n 
C4 N3 7NV sing 32 n n 
C19 C3 7NV sing 33 n y 
C21 N26 7NV sing 34 n n 
C15 H15 7NV sing 35 n n 
C16 H16 7NV sing 36 n n 
C3 H3 7NV sing 37 n n 
C17 H17 7NV sing 38 n n 
C23 H23 7NV sing 39 n n 
C24 H24 7NV sing 40 n n 
C6 H61C 7NV sing 41 n n 
C6 H62C 7NV sing 42 n n 
C7 H71C 7NV sing 43 n n 
C7 H72C 7NV sing 44 n n 
C7 H73C 7NV sing 45 n n 
C5 H51C 7NV sing 46 n n 
C5 H52C 7NV sing 47 n n 
C9 H91C 7NV sing 48 n n 
C9 H92C 7NV sing 49 n n 
C9 H93C 7NV sing 50 n n 
C13 H13 7NV sing 51 n n 
N25 H25 7NV sing 52 n n 
C4 H41C 7NV sing 53 n n 
C4 H42C 7NV sing 54 n n 
C19 H19 7NV sing 55 n n 
C21 H211 7NV sing 56 n n 
C21 H212 7NV sing 57 n n 
N3 HA 7NV sing 58 n n 
O32 H32 7NV sing 59 n n 
C27 H271 7NV sing 60 n n 
C27 H272 7NV sing 61 n n 
#
_atom_sites.entry_id                     4CFC 
_atom_sites.fract_transf_matrix[1][1]    0.014021 
_atom_sites.fract_transf_matrix[1][2]    0.008095 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01619 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1210 1210 SO4 SO4 . 
D 2 SO4 A 1 1211 1211 SO4 SO4 . 
E 2 SO4 A 1 1212 1212 SO4 SO4 . 
F 2 SO4 A 1 1213 1213 SO4 SO4 . 
G 3 ACT A 1 1214 1214 ACT ACT . 
H 4 CL A 1 1215 1215 CL CL . 
I 5 7NV A 1 1216 1216 7NV 7NV . 
J 2 SO4 B 1 1210 1210 SO4 SO4 . 
K 2 SO4 B 1 1211 1211 SO4 SO4 . 
L 2 SO4 B 1 1212 1212 SO4 SO4 . 
M 2 SO4 B 1 1213 1213 SO4 SO4 . 
N 3 ACT B 1 1214 1214 ACT ACT . 
O 4 CL B 1 1215 1215 CL CL . 
P 5 7NV B 1 1216 1216 7NV 7NV . 
Q 6 HOH A 1 2001 2001 HOH HOH . 
Q 6 HOH A 2 2002 2002 HOH HOH . 
Q 6 HOH A 3 2003 2003 HOH HOH . 
Q 6 HOH A 4 2004 2004 HOH HOH . 
Q 6 HOH A 5 2005 2005 HOH HOH . 
Q 6 HOH A 6 2006 2006 HOH HOH . 
Q 6 HOH A 7 2007 2007 HOH HOH . 
Q 6 HOH A 8 2008 2008 HOH HOH . 
Q 6 HOH A 9 2009 2009 HOH HOH . 
Q 6 HOH A 10 2010 2010 HOH HOH . 
Q 6 HOH A 11 2011 2011 HOH HOH . 
Q 6 HOH A 12 2012 2012 HOH HOH . 
Q 6 HOH A 13 2013 2013 HOH HOH . 
Q 6 HOH A 14 2014 2014 HOH HOH . 
Q 6 HOH A 15 2015 2015 HOH HOH . 
Q 6 HOH A 16 2016 2016 HOH HOH . 
Q 6 HOH A 17 2017 2017 HOH HOH . 
Q 6 HOH A 18 2018 2018 HOH HOH . 
Q 6 HOH A 19 2019 2019 HOH HOH . 
Q 6 HOH A 20 2020 2020 HOH HOH . 
Q 6 HOH A 21 2021 2021 HOH HOH . 
Q 6 HOH A 22 2022 2022 HOH HOH . 
Q 6 HOH A 23 2023 2023 HOH HOH . 
Q 6 HOH A 24 2024 2024 HOH HOH . 
Q 6 HOH A 25 2025 2025 HOH HOH . 
Q 6 HOH A 26 2026 2026 HOH HOH . 
Q 6 HOH A 27 2027 2027 HOH HOH . 
Q 6 HOH A 28 2028 2028 HOH HOH . 
Q 6 HOH A 29 2029 2029 HOH HOH . 
Q 6 HOH A 30 2030 2030 HOH HOH . 
Q 6 HOH A 31 2031 2031 HOH HOH . 
Q 6 HOH A 32 2032 2032 HOH HOH . 
Q 6 HOH A 33 2033 2033 HOH HOH . 
Q 6 HOH A 34 2034 2034 HOH HOH . 
Q 6 HOH A 35 2035 2035 HOH HOH . 
Q 6 HOH A 36 2036 2036 HOH HOH . 
Q 6 HOH A 37 2037 2037 HOH HOH . 
Q 6 HOH A 38 2038 2038 HOH HOH . 
Q 6 HOH A 39 2039 2039 HOH HOH . 
Q 6 HOH A 40 2040 2040 HOH HOH . 
Q 6 HOH A 41 2041 2041 HOH HOH . 
Q 6 HOH A 42 2042 2042 HOH HOH . 
Q 6 HOH A 43 2043 2043 HOH HOH . 
Q 6 HOH A 44 2044 2044 HOH HOH . 
Q 6 HOH A 45 2045 2045 HOH HOH . 
Q 6 HOH A 46 2046 2046 HOH HOH . 
Q 6 HOH A 47 2047 2047 HOH HOH . 
Q 6 HOH A 48 2048 2048 HOH HOH . 
Q 6 HOH A 49 2049 2049 HOH HOH . 
Q 6 HOH A 50 2050 2050 HOH HOH . 
Q 6 HOH A 51 2051 2051 HOH HOH . 
Q 6 HOH A 52 2052 2052 HOH HOH . 
Q 6 HOH A 53 2053 2053 HOH HOH . 
Q 6 HOH A 54 2054 2054 HOH HOH . 
Q 6 HOH A 55 2055 2055 HOH HOH . 
Q 6 HOH A 56 2056 2056 HOH HOH . 
Q 6 HOH A 57 2057 2057 HOH HOH . 
Q 6 HOH A 58 2058 2058 HOH HOH . 
Q 6 HOH A 59 2059 2059 HOH HOH . 
Q 6 HOH A 60 2060 2060 HOH HOH . 
Q 6 HOH A 61 2061 2061 HOH HOH . 
Q 6 HOH A 62 2062 2062 HOH HOH . 
Q 6 HOH A 63 2063 2063 HOH HOH . 
Q 6 HOH A 64 2064 2064 HOH HOH . 
R 6 HOH B 1 2001 2001 HOH HOH . 
R 6 HOH B 2 2002 2002 HOH HOH . 
R 6 HOH B 3 2003 2003 HOH HOH . 
R 6 HOH B 4 2004 2004 HOH HOH . 
R 6 HOH B 5 2005 2005 HOH HOH . 
R 6 HOH B 6 2006 2006 HOH HOH . 
R 6 HOH B 7 2007 2007 HOH HOH . 
R 6 HOH B 8 2008 2008 HOH HOH . 
R 6 HOH B 9 2009 2009 HOH HOH . 
R 6 HOH B 10 2010 2010 HOH HOH . 
R 6 HOH B 11 2011 2011 HOH HOH . 
R 6 HOH B 12 2012 2012 HOH HOH . 
R 6 HOH B 13 2013 2013 HOH HOH . 
R 6 HOH B 14 2014 2014 HOH HOH . 
R 6 HOH B 15 2015 2015 HOH HOH . 
R 6 HOH B 16 2016 2016 HOH HOH . 
R 6 HOH B 17 2017 2017 HOH HOH . 
R 6 HOH B 18 2018 2018 HOH HOH . 
R 6 HOH B 19 2019 2019 HOH HOH . 
R 6 HOH B 20 2020 2020 HOH HOH . 
R 6 HOH B 21 2021 2021 HOH HOH . 
R 6 HOH B 22 2022 2022 HOH HOH . 
R 6 HOH B 23 2023 2023 HOH HOH . 
R 6 HOH B 24 2024 2024 HOH HOH . 
R 6 HOH B 25 2025 2025 HOH HOH . 
R 6 HOH B 26 2026 2026 HOH HOH . 
R 6 HOH B 27 2027 2027 HOH HOH . 
R 6 HOH B 28 2028 2028 HOH HOH . 
R 6 HOH B 29 2029 2029 HOH HOH . 
R 6 HOH B 30 2030 2030 HOH HOH . 
R 6 HOH B 31 2031 2031 HOH HOH . 
R 6 HOH B 32 2032 2032 HOH HOH . 
R 6 HOH B 33 2033 2033 HOH HOH . 
R 6 HOH B 34 2034 2034 HOH HOH . 
R 6 HOH B 35 2035 2035 HOH HOH . 
R 6 HOH B 36 2036 2036 HOH HOH . 
R 6 HOH B 37 2037 2037 HOH HOH . 
R 6 HOH B 38 2038 2038 HOH HOH . 
R 6 HOH B 39 2039 2039 HOH HOH . 
R 6 HOH B 40 2040 2040 HOH HOH . 
R 6 HOH B 41 2041 2041 HOH HOH . 
R 6 HOH B 42 2042 2042 HOH HOH . 
R 6 HOH B 43 2043 2043 HOH HOH . 
R 6 HOH B 44 2044 2044 HOH HOH . 
R 6 HOH B 45 2045 2045 HOH HOH . 
R 6 HOH B 46 2046 2046 HOH HOH . 
R 6 HOH B 47 2047 2047 HOH HOH . 
R 6 HOH B 48 2048 2048 HOH HOH . 
R 6 HOH B 49 2049 2049 HOH HOH . 
R 6 HOH B 50 2050 2050 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 7NV . . . I 5 12.75 -49.298 -0.801 0.8 44.36 ? C15 7NV 1216 A 1 
HETATM 2 C C16 7NV . . . I 5 12.773 -49.378 0.574 0.8 43.92 ? C16 7NV 1216 A 1 
HETATM 3 C C17 7NV . . . I 5 11.68 -48.954 1.301 0.8 42.38 ? C17 7NV 1216 A 1 
HETATM 4 C C23 7NV . . . I 5 11.037 -43.995 -1.239 0.8 29.61 ? C23 7NV 1216 A 1 
HETATM 5 C C6 7NV . . . I 5 10.663 -48.274 7.121 0.8 41.75 ? C6 7NV 1216 A 1 
HETATM 6 C C24 7NV . . . I 5 11.88 -44.269 -2.291 0.8 29.49 ? C24 7NV 1216 A 1 
HETATM 7 C C7 7NV . . . I 5 11.878 -48.918 7.744 0.8 40.01 ? C7 7NV 1216 A 1 
HETATM 8 C C9 7NV . . . I 5 7.994 -43.381 0.351 0.8 35.79 ? C9 7NV 1216 A 1 
HETATM 9 C C13 7NV . . . I 5 9.378 -47.963 1.411 0.8 41.12 ? C13 7NV 1216 A 1 
HETATM 10 C C30 7NV . . . I 5 12.505 -44.981 0.391 0.8 30 ? C30 7NV 1216 A 1 
HETATM 11 C C5 7NV . . . I 5 10.508 -48.691 5.683 0.8 41.3 ? C5 7NV 1216 A 1 
HETATM 12 C C18 7NV . . . I 5 10.566 -48.448 0.661 0.8 41.77 ? C18 7NV 1216 A 1 
HETATM 13 C C22 7NV . . . I 5 11.314 -44.331 0.078 0.8 29.62 ? C22 7NV 1216 A 1 
HETATM 14 C C25 7NV . . . I 5 13.048 -44.903 -1.969 0.8 30.91 ? C25 7NV 1216 A 1 
HETATM 15 C C29 7NV . . . I 5 13.348 -45.246 -0.677 0.8 31.18 ? C29 7NV 1216 A 1 
HETATM 16 C C2 7NV . . . I 5 9.206 -48.611 2.762 0.8 41.3 ? C2 7NV 1216 A 1 
HETATM 17 C C31 7NV . . . I 5 12.922 -45.392 1.77 0.8 27.24 ? C31 7NV 1216 A 1 
HETATM 18 C C27 7NV . . . I 5 15.022 -45.719 -1.955 0.8 33.84 ? C27 7NV 1216 A 1 
HETATM 19 C C12 7NV . . . I 5 8.534 -45.729 0.935 0.8 36.06 ? C12 7NV 1216 A 1 
HETATM 20 C C4 7NV . . . I 5 9.135 -48.275 5.204 0.8 41.79 ? C4 7NV 1216 A 1 
HETATM 21 C C19 7NV . . . I 5 10.548 -48.369 -0.711 0.8 43.23 ? C19 7NV 1216 A 1 
HETATM 22 C C21 7NV . . . I 5 10.275 -43.958 1.108 0.8 31.81 ? C21 7NV 1216 A 1 
HETATM 23 N N3 7NV . . . I 5 9.194 -47.762 3.851 0.8 42.21 ? N3 7NV 1216 A 1 
HETATM 24 O O33 7NV . . . I 5 12.042 -45.925 2.488 0.8 28.52 ? O33 7NV 1216 A 1 
HETATM 25 O O1 7NV . . . I 5 9.095 -49.823 2.828 0.8 42.49 ? O1 7NV 1216 A 1 
HETATM 26 O O32 7NV . . . I 5 14.127 -45.181 2.116 0.8 22.85 ? O32 7NV 1216 A 1 
HETATM 27 O O26 7NV . . . I 5 14.013 -45.251 -2.861 0.8 32.2 ? O26 7NV 1216 A 1 
HETATM 28 O O28 7NV . . . I 5 14.569 -45.869 -0.598 0.8 33.28 ? O28 7NV 1216 A 1 
HETATM 29 O O11 7NV . . . I 5 7.447 -46.168 0.574 0.8 32.27 ? O11 7NV 1216 A 1 
HETATM 30 C C3 7NV . . . I 5 11.634 -48.794 -1.436 0.8 44.84 ? C3 7NV 1216 A 1 
HETATM 31 N N25 7NV . . . I 5 9.468 -46.533 1.579 0.8 37.52 ? N25 7NV 1216 A 1 
HETATM 32 N N26 7NV . . . I 5 8.943 -44.409 0.746 0.8 35.21 ? N26 7NV 1216 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#