data_4CFD # _model_server_result.job_id 6MU02V49TCggmRRohDpKYQ _model_server_result.datetime_utc '2024-11-22 05:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1215}' # _entry.id 4CFD # _exptl.entry_id 4CFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.477 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[[(1R)-2-(tert-butylamino)-2-oxidanylidene-1-phenyl-ethyl]carbamoyl-methyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CFD _cell.length_a 71.691 _cell.length_b 71.691 _cell.length_c 66.575 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 P N N # _chem_comp.formula 'C23 H27 N3 O6' _chem_comp.formula_weight 441.477 _chem_comp.id S8Y _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[[(1R)-2-(tert-butylamino)-2-oxidanylidene-1-phenyl-ethyl]carbamoyl-methyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S8Y sing 283 n y C1 C3 S8Y doub 284 n y C2 C4 S8Y doub 285 n y C3 C5 S8Y sing 286 n y C4 C9 S8Y sing 287 n y C5 C9 S8Y doub 288 n y C6 C7 S8Y sing 289 n y C6 C10 S8Y doub 290 n y C7 C11 S8Y doub 291 n y C8 C10 S8Y sing 292 n y C8 C12 S8Y doub 293 n y C8 C13 S8Y sing 294 n n C9 C22 S8Y sing 295 n n C10 C21 S8Y sing 296 n n C11 C12 S8Y sing 297 n y C11 O31 S8Y sing 298 n n C12 O32 S8Y sing 299 n n C13 O27 S8Y sing 300 n n C13 O28 S8Y doub 301 n n C14 C22 S8Y sing 302 n n C14 N24 S8Y sing 303 n n C14 O29 S8Y doub 304 n n C15 N25 S8Y sing 305 n n C15 N26 S8Y sing 306 n n C15 O30 S8Y doub 307 n n C16 O31 S8Y sing 308 n n C16 O32 S8Y sing 309 n n C17 C23 S8Y sing 310 n n C18 C23 S8Y sing 311 n n C19 C23 S8Y sing 312 n n C20 N26 S8Y sing 313 n n C21 N26 S8Y sing 314 n n C22 N25 S8Y sing 315 n n C23 N24 S8Y sing 316 n n C1 H1 S8Y sing 317 n n C2 H2 S8Y sing 318 n n C3 H3 S8Y sing 319 n n C4 H4 S8Y sing 320 n n C5 H5 S8Y sing 321 n n C6 H6 S8Y sing 322 n n C7 H7 S8Y sing 323 n n C22 H22 S8Y sing 324 n n C21 H211 S8Y sing 325 n n C21 H212 S8Y sing 326 n n O27 H27 S8Y sing 327 n n N24 H24 S8Y sing 328 n n N25 H25 S8Y sing 329 n n C16 H161 S8Y sing 330 n n C16 H162 S8Y sing 331 n n C17 H171 S8Y sing 332 n n C17 H172 S8Y sing 333 n n C17 H173 S8Y sing 334 n n C18 H181 S8Y sing 335 n n C18 H182 S8Y sing 336 n n C18 H183 S8Y sing 337 n n C19 H191 S8Y sing 338 n n C19 H192 S8Y sing 339 n n C19 H193 S8Y sing 340 n n C20 H201 S8Y sing 341 n n C20 H202 S8Y sing 342 n n C20 H203 S8Y sing 343 n n # _atom_sites.entry_id 4CFD _atom_sites.fract_transf_matrix[1][1] 0.013949 _atom_sites.fract_transf_matrix[1][2] 0.008053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 ACT A 1 1213 1213 ACT ACT . G 3 ACT A 1 1214 1214 ACT ACT . H 3 ACT A 1 1215 1215 ACT ACT . I 4 CL A 1 1216 1216 CL CL . J 5 S8Y A 1 1217 1217 S8Y S8Y . K 2 SO4 B 1 1210 1210 SO4 SO4 . L 2 SO4 B 1 1211 1211 SO4 SO4 . M 2 SO4 B 1 1212 1212 SO4 SO4 . N 3 ACT B 1 1213 1213 ACT ACT . O 4 CL B 1 1214 1214 CL CL . P 5 S8Y B 1 1215 1215 S8Y S8Y . Q 6 HOH A 1 2001 2001 HOH HOH . Q 6 HOH A 2 2002 2002 HOH HOH . Q 6 HOH A 3 2003 2003 HOH HOH . Q 6 HOH A 4 2004 2004 HOH HOH . Q 6 HOH A 5 2005 2005 HOH HOH . Q 6 HOH A 6 2006 2006 HOH HOH . Q 6 HOH A 7 2007 2007 HOH HOH . Q 6 HOH A 8 2008 2008 HOH HOH . Q 6 HOH A 9 2009 2009 HOH HOH . Q 6 HOH A 10 2010 2010 HOH HOH . Q 6 HOH A 11 2011 2011 HOH HOH . Q 6 HOH A 12 2012 2012 HOH HOH . Q 6 HOH A 13 2013 2013 HOH HOH . Q 6 HOH A 14 2014 2014 HOH HOH . Q 6 HOH A 15 2015 2015 HOH HOH . Q 6 HOH A 16 2016 2016 HOH HOH . Q 6 HOH A 17 2017 2017 HOH HOH . Q 6 HOH A 18 2018 2018 HOH HOH . Q 6 HOH A 19 2019 2019 HOH HOH . Q 6 HOH A 20 2020 2020 HOH HOH . Q 6 HOH A 21 2021 2021 HOH HOH . Q 6 HOH A 22 2022 2022 HOH HOH . Q 6 HOH A 23 2023 2023 HOH HOH . Q 6 HOH A 24 2024 2024 HOH HOH . Q 6 HOH A 25 2025 2025 HOH HOH . Q 6 HOH A 26 2026 2026 HOH HOH . Q 6 HOH A 27 2027 2027 HOH HOH . Q 6 HOH A 28 2028 2028 HOH HOH . Q 6 HOH A 29 2029 2029 HOH HOH . Q 6 HOH A 30 2030 2030 HOH HOH . Q 6 HOH A 31 2031 2031 HOH HOH . Q 6 HOH A 32 2032 2032 HOH HOH . Q 6 HOH A 33 2033 2033 HOH HOH . Q 6 HOH A 34 2034 2034 HOH HOH . Q 6 HOH A 35 2035 2035 HOH HOH . Q 6 HOH A 36 2036 2036 HOH HOH . Q 6 HOH A 37 2037 2037 HOH HOH . Q 6 HOH A 38 2038 2038 HOH HOH . Q 6 HOH A 39 2039 2039 HOH HOH . Q 6 HOH A 40 2040 2040 HOH HOH . Q 6 HOH A 41 2041 2041 HOH HOH . Q 6 HOH A 42 2042 2042 HOH HOH . Q 6 HOH A 43 2043 2043 HOH HOH . Q 6 HOH A 44 2044 2044 HOH HOH . Q 6 HOH A 45 2045 2045 HOH HOH . Q 6 HOH A 46 2046 2046 HOH HOH . Q 6 HOH A 47 2047 2047 HOH HOH . Q 6 HOH A 48 2048 2048 HOH HOH . Q 6 HOH A 49 2049 2049 HOH HOH . Q 6 HOH A 50 2050 2050 HOH HOH . Q 6 HOH A 51 2051 2051 HOH HOH . Q 6 HOH A 52 2052 2052 HOH HOH . Q 6 HOH A 53 2053 2053 HOH HOH . R 6 HOH B 1 2001 2001 HOH HOH . R 6 HOH B 2 2002 2002 HOH HOH . R 6 HOH B 3 2003 2003 HOH HOH . R 6 HOH B 4 2004 2004 HOH HOH . R 6 HOH B 5 2005 2005 HOH HOH . R 6 HOH B 6 2006 2006 HOH HOH . R 6 HOH B 7 2007 2007 HOH HOH . R 6 HOH B 8 2008 2008 HOH HOH . R 6 HOH B 9 2009 2009 HOH HOH . R 6 HOH B 10 2010 2010 HOH HOH . R 6 HOH B 11 2011 2011 HOH HOH . R 6 HOH B 12 2012 2012 HOH HOH . R 6 HOH B 13 2013 2013 HOH HOH . R 6 HOH B 14 2014 2014 HOH HOH . R 6 HOH B 15 2015 2015 HOH HOH . R 6 HOH B 16 2016 2016 HOH HOH . R 6 HOH B 17 2017 2017 HOH HOH . R 6 HOH B 18 2018 2018 HOH HOH . R 6 HOH B 19 2019 2019 HOH HOH . R 6 HOH B 20 2020 2020 HOH HOH . R 6 HOH B 21 2021 2021 HOH HOH . R 6 HOH B 22 2022 2022 HOH HOH . R 6 HOH B 23 2023 2023 HOH HOH . R 6 HOH B 24 2024 2024 HOH HOH . R 6 HOH B 25 2025 2025 HOH HOH . R 6 HOH B 26 2026 2026 HOH HOH . R 6 HOH B 27 2027 2027 HOH HOH . R 6 HOH B 28 2028 2028 HOH HOH . R 6 HOH B 29 2029 2029 HOH HOH . R 6 HOH B 30 2030 2030 HOH HOH . R 6 HOH B 31 2031 2031 HOH HOH . R 6 HOH B 32 2032 2032 HOH HOH . R 6 HOH B 33 2033 2033 HOH HOH . R 6 HOH B 34 2034 2034 HOH HOH . R 6 HOH B 35 2035 2035 HOH HOH . R 6 HOH B 36 2036 2036 HOH HOH . R 6 HOH B 37 2037 2037 HOH HOH . R 6 HOH B 38 2038 2038 HOH HOH . R 6 HOH B 39 2039 2039 HOH HOH . R 6 HOH B 40 2040 2040 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S8Y . . . P 5 -10.567 49.058 17.775 0.9 43.65 ? C1 S8Y 1215 B 1 HETATM 2 C C2 S8Y . . . P 5 -10.88 49.954 16.781 0.9 46.43 ? C2 S8Y 1215 B 1 HETATM 3 C C3 S8Y . . . P 5 -9.836 47.933 17.472 0.9 45.24 ? C3 S8Y 1215 B 1 HETATM 4 C C4 S8Y . . . P 5 -10.46 49.723 15.488 0.9 49.27 ? C4 S8Y 1215 B 1 HETATM 5 C C5 S8Y . . . P 5 -9.419 47.702 16.181 0.9 43.73 ? C5 S8Y 1215 B 1 HETATM 6 C C6 S8Y . . . P 5 -11.119 44.132 10.48 0.9 30.74 ? C6 S8Y 1215 B 1 HETATM 7 C C7 S8Y . . . P 5 -11.99 44.285 9.426 0.9 30.08 ? C7 S8Y 1215 B 1 HETATM 8 C C8 S8Y . . . P 5 -12.675 45.126 12.005 0.9 29.08 ? C8 S8Y 1215 B 1 HETATM 9 C C9 S8Y . . . P 5 -9.727 48.592 15.176 0.9 45.01 ? C9 S8Y 1215 B 1 HETATM 10 C C10 S8Y . . . P 5 -11.436 44.544 11.764 0.9 29.64 ? C10 S8Y 1215 B 1 HETATM 11 C C11 S8Y . . . P 5 -13.201 44.866 9.682 0.9 28.99 ? C11 S8Y 1215 B 1 HETATM 12 C C12 S8Y . . . P 5 -13.532 45.271 10.934 0.9 29.35 ? C12 S8Y 1215 B 1 HETATM 13 C C13 S8Y . . . P 5 -13.137 45.602 13.332 0.9 25.79 ? C13 S8Y 1215 B 1 HETATM 14 C C14 S8Y . . . P 5 -9.942 49.195 12.785 0.9 46.89 ? C14 S8Y 1215 B 1 HETATM 15 C C15 S8Y . . . P 5 -8.655 46.113 12.753 0.9 36.31 ? C15 S8Y 1215 B 1 HETATM 16 C C16 S8Y . . . P 5 -15.182 45.676 9.611 0.9 29.55 ? C16 S8Y 1215 B 1 HETATM 17 C C17 S8Y . . . P 5 -13.316 48.768 11.229 0.9 48.39 ? C17 S8Y 1215 B 1 HETATM 18 C C18 S8Y . . . P 5 -12.372 50.923 12.033 0.9 48.1 ? C18 S8Y 1215 B 1 HETATM 19 C C19 S8Y . . . P 5 -11.235 49.662 10.208 0.9 50.69 ? C19 S8Y 1215 B 1 HETATM 20 C C20 S8Y . . . P 5 -8.11 43.854 12.015 0.9 36.39 ? C20 S8Y 1215 B 1 HETATM 21 C C21 S8Y . . . P 5 -10.401 44.306 12.83 0.9 33.12 ? C21 S8Y 1215 B 1 HETATM 22 C C22 S8Y . . . P 5 -9.258 48.307 13.783 0.9 43.36 ? C22 S8Y 1215 B 1 HETATM 23 C C23 S8Y . . . P 5 -12.027 49.54 11.498 0.9 49.85 ? C23 S8Y 1215 B 1 HETATM 24 N N24 S8Y . . . P 5 -11.237 48.818 12.478 0.9 47.51 ? N24 S8Y 1215 B 1 HETATM 25 N N25 S8Y . . . P 5 -9.573 46.948 13.379 0.9 39.91 ? N25 S8Y 1215 B 1 HETATM 26 N N26 S8Y . . . P 5 -9.075 44.812 12.513 0.9 36.23 ? N26 S8Y 1215 B 1 HETATM 27 O O27 S8Y . . . P 5 -14.302 45.274 13.685 0.9 23.42 ? O27 S8Y 1215 B 1 HETATM 28 O O28 S8Y . . . P 5 -12.34 46.305 13.996 0.9 23.83 ? O28 S8Y 1215 B 1 HETATM 29 O O29 S8Y . . . P 5 -9.374 50.177 12.335 0.9 53.69 ? O29 S8Y 1215 B 1 HETATM 30 O O30 S8Y . . . P 5 -7.536 46.472 12.412 0.9 33.54 ? O30 S8Y 1215 B 1 HETATM 31 O O31 S8Y . . . P 5 -14.185 45.09 8.763 0.9 29.1 ? O31 S8Y 1215 B 1 HETATM 32 O O32 S8Y . . . P 5 -14.788 45.824 10.98 0.9 30.66 ? O32 S8Y 1215 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #