data_4CFD # _model_server_result.job_id j5UXAEYFjSOyn-hVd_sgkg _model_server_result.datetime_utc '2024-11-22 04:30:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1217}' # _entry.id 4CFD # _exptl.entry_id 4CFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.477 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[[(1R)-2-(tert-butylamino)-2-oxidanylidene-1-phenyl-ethyl]carbamoyl-methyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CFD _cell.length_a 71.691 _cell.length_b 71.691 _cell.length_c 66.575 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 P N N # _chem_comp.formula 'C23 H27 N3 O6' _chem_comp.formula_weight 441.477 _chem_comp.id S8Y _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[[(1R)-2-(tert-butylamino)-2-oxidanylidene-1-phenyl-ethyl]carbamoyl-methyl-amino]methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S8Y sing 283 n y C1 C3 S8Y doub 284 n y C2 C4 S8Y doub 285 n y C3 C5 S8Y sing 286 n y C4 C9 S8Y sing 287 n y C5 C9 S8Y doub 288 n y C6 C7 S8Y sing 289 n y C6 C10 S8Y doub 290 n y C7 C11 S8Y doub 291 n y C8 C10 S8Y sing 292 n y C8 C12 S8Y doub 293 n y C8 C13 S8Y sing 294 n n C9 C22 S8Y sing 295 n n C10 C21 S8Y sing 296 n n C11 C12 S8Y sing 297 n y C11 O31 S8Y sing 298 n n C12 O32 S8Y sing 299 n n C13 O27 S8Y sing 300 n n C13 O28 S8Y doub 301 n n C14 C22 S8Y sing 302 n n C14 N24 S8Y sing 303 n n C14 O29 S8Y doub 304 n n C15 N25 S8Y sing 305 n n C15 N26 S8Y sing 306 n n C15 O30 S8Y doub 307 n n C16 O31 S8Y sing 308 n n C16 O32 S8Y sing 309 n n C17 C23 S8Y sing 310 n n C18 C23 S8Y sing 311 n n C19 C23 S8Y sing 312 n n C20 N26 S8Y sing 313 n n C21 N26 S8Y sing 314 n n C22 N25 S8Y sing 315 n n C23 N24 S8Y sing 316 n n C1 H1 S8Y sing 317 n n C2 H2 S8Y sing 318 n n C3 H3 S8Y sing 319 n n C4 H4 S8Y sing 320 n n C5 H5 S8Y sing 321 n n C6 H6 S8Y sing 322 n n C7 H7 S8Y sing 323 n n C22 H22 S8Y sing 324 n n C21 H211 S8Y sing 325 n n C21 H212 S8Y sing 326 n n O27 H27 S8Y sing 327 n n N24 H24 S8Y sing 328 n n N25 H25 S8Y sing 329 n n C16 H161 S8Y sing 330 n n C16 H162 S8Y sing 331 n n C17 H171 S8Y sing 332 n n C17 H172 S8Y sing 333 n n C17 H173 S8Y sing 334 n n C18 H181 S8Y sing 335 n n C18 H182 S8Y sing 336 n n C18 H183 S8Y sing 337 n n C19 H191 S8Y sing 338 n n C19 H192 S8Y sing 339 n n C19 H193 S8Y sing 340 n n C20 H201 S8Y sing 341 n n C20 H202 S8Y sing 342 n n C20 H203 S8Y sing 343 n n # _atom_sites.entry_id 4CFD _atom_sites.fract_transf_matrix[1][1] 0.013949 _atom_sites.fract_transf_matrix[1][2] 0.008053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 ACT A 1 1213 1213 ACT ACT . G 3 ACT A 1 1214 1214 ACT ACT . H 3 ACT A 1 1215 1215 ACT ACT . I 4 CL A 1 1216 1216 CL CL . J 5 S8Y A 1 1217 1217 S8Y S8Y . K 2 SO4 B 1 1210 1210 SO4 SO4 . L 2 SO4 B 1 1211 1211 SO4 SO4 . M 2 SO4 B 1 1212 1212 SO4 SO4 . N 3 ACT B 1 1213 1213 ACT ACT . O 4 CL B 1 1214 1214 CL CL . P 5 S8Y B 1 1215 1215 S8Y S8Y . Q 6 HOH A 1 2001 2001 HOH HOH . Q 6 HOH A 2 2002 2002 HOH HOH . Q 6 HOH A 3 2003 2003 HOH HOH . Q 6 HOH A 4 2004 2004 HOH HOH . Q 6 HOH A 5 2005 2005 HOH HOH . Q 6 HOH A 6 2006 2006 HOH HOH . Q 6 HOH A 7 2007 2007 HOH HOH . Q 6 HOH A 8 2008 2008 HOH HOH . Q 6 HOH A 9 2009 2009 HOH HOH . Q 6 HOH A 10 2010 2010 HOH HOH . Q 6 HOH A 11 2011 2011 HOH HOH . Q 6 HOH A 12 2012 2012 HOH HOH . Q 6 HOH A 13 2013 2013 HOH HOH . Q 6 HOH A 14 2014 2014 HOH HOH . Q 6 HOH A 15 2015 2015 HOH HOH . Q 6 HOH A 16 2016 2016 HOH HOH . Q 6 HOH A 17 2017 2017 HOH HOH . Q 6 HOH A 18 2018 2018 HOH HOH . Q 6 HOH A 19 2019 2019 HOH HOH . Q 6 HOH A 20 2020 2020 HOH HOH . Q 6 HOH A 21 2021 2021 HOH HOH . Q 6 HOH A 22 2022 2022 HOH HOH . Q 6 HOH A 23 2023 2023 HOH HOH . Q 6 HOH A 24 2024 2024 HOH HOH . Q 6 HOH A 25 2025 2025 HOH HOH . Q 6 HOH A 26 2026 2026 HOH HOH . Q 6 HOH A 27 2027 2027 HOH HOH . Q 6 HOH A 28 2028 2028 HOH HOH . Q 6 HOH A 29 2029 2029 HOH HOH . Q 6 HOH A 30 2030 2030 HOH HOH . Q 6 HOH A 31 2031 2031 HOH HOH . Q 6 HOH A 32 2032 2032 HOH HOH . Q 6 HOH A 33 2033 2033 HOH HOH . Q 6 HOH A 34 2034 2034 HOH HOH . Q 6 HOH A 35 2035 2035 HOH HOH . Q 6 HOH A 36 2036 2036 HOH HOH . Q 6 HOH A 37 2037 2037 HOH HOH . Q 6 HOH A 38 2038 2038 HOH HOH . Q 6 HOH A 39 2039 2039 HOH HOH . Q 6 HOH A 40 2040 2040 HOH HOH . Q 6 HOH A 41 2041 2041 HOH HOH . Q 6 HOH A 42 2042 2042 HOH HOH . Q 6 HOH A 43 2043 2043 HOH HOH . Q 6 HOH A 44 2044 2044 HOH HOH . Q 6 HOH A 45 2045 2045 HOH HOH . Q 6 HOH A 46 2046 2046 HOH HOH . Q 6 HOH A 47 2047 2047 HOH HOH . Q 6 HOH A 48 2048 2048 HOH HOH . Q 6 HOH A 49 2049 2049 HOH HOH . Q 6 HOH A 50 2050 2050 HOH HOH . Q 6 HOH A 51 2051 2051 HOH HOH . Q 6 HOH A 52 2052 2052 HOH HOH . Q 6 HOH A 53 2053 2053 HOH HOH . R 6 HOH B 1 2001 2001 HOH HOH . R 6 HOH B 2 2002 2002 HOH HOH . R 6 HOH B 3 2003 2003 HOH HOH . R 6 HOH B 4 2004 2004 HOH HOH . R 6 HOH B 5 2005 2005 HOH HOH . R 6 HOH B 6 2006 2006 HOH HOH . R 6 HOH B 7 2007 2007 HOH HOH . R 6 HOH B 8 2008 2008 HOH HOH . R 6 HOH B 9 2009 2009 HOH HOH . R 6 HOH B 10 2010 2010 HOH HOH . R 6 HOH B 11 2011 2011 HOH HOH . R 6 HOH B 12 2012 2012 HOH HOH . R 6 HOH B 13 2013 2013 HOH HOH . R 6 HOH B 14 2014 2014 HOH HOH . R 6 HOH B 15 2015 2015 HOH HOH . R 6 HOH B 16 2016 2016 HOH HOH . R 6 HOH B 17 2017 2017 HOH HOH . R 6 HOH B 18 2018 2018 HOH HOH . R 6 HOH B 19 2019 2019 HOH HOH . R 6 HOH B 20 2020 2020 HOH HOH . R 6 HOH B 21 2021 2021 HOH HOH . R 6 HOH B 22 2022 2022 HOH HOH . R 6 HOH B 23 2023 2023 HOH HOH . R 6 HOH B 24 2024 2024 HOH HOH . R 6 HOH B 25 2025 2025 HOH HOH . R 6 HOH B 26 2026 2026 HOH HOH . R 6 HOH B 27 2027 2027 HOH HOH . R 6 HOH B 28 2028 2028 HOH HOH . R 6 HOH B 29 2029 2029 HOH HOH . R 6 HOH B 30 2030 2030 HOH HOH . R 6 HOH B 31 2031 2031 HOH HOH . R 6 HOH B 32 2032 2032 HOH HOH . R 6 HOH B 33 2033 2033 HOH HOH . R 6 HOH B 34 2034 2034 HOH HOH . R 6 HOH B 35 2035 2035 HOH HOH . R 6 HOH B 36 2036 2036 HOH HOH . R 6 HOH B 37 2037 2037 HOH HOH . R 6 HOH B 38 2038 2038 HOH HOH . R 6 HOH B 39 2039 2039 HOH HOH . R 6 HOH B 40 2040 2040 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S8Y . . . J 5 -36.97 33.456 -6.559 1 47.45 ? C1 S8Y 1217 A 1 HETATM 2 C C2 S8Y . . . J 5 -37.483 34.294 -5.599 1 46.93 ? C2 S8Y 1217 A 1 HETATM 3 C C3 S8Y . . . J 5 -36.504 32.216 -6.189 1 48.76 ? C3 S8Y 1217 A 1 HETATM 4 C C4 S8Y . . . J 5 -37.529 33.894 -4.282 1 50.69 ? C4 S8Y 1217 A 1 HETATM 5 C C5 S8Y . . . J 5 -36.552 31.82 -4.871 1 46.01 ? C5 S8Y 1217 A 1 HETATM 6 C C6 S8Y . . . J 5 -32.638 31.71 1.076 1 33.54 ? C6 S8Y 1217 A 1 HETATM 7 C C7 S8Y . . . J 5 -32.371 32.543 2.135 1 32.58 ? C7 S8Y 1217 A 1 HETATM 8 C C8 S8Y . . . J 5 -32.755 33.549 -0.464 1 34.65 ? C8 S8Y 1217 A 1 HETATM 9 C C9 S8Y . . . J 5 -37.062 32.651 -3.9 1 45.67 ? C9 S8Y 1217 A 1 HETATM 10 C C10 S8Y . . . J 5 -32.837 32.184 -0.209 1 33.06 ? C10 S8Y 1217 A 1 HETATM 11 C C11 S8Y . . . J 5 -32.3 33.883 1.874 1 34.24 ? C11 S8Y 1217 A 1 HETATM 12 C C12 S8Y . . . J 5 -32.482 34.367 0.616 1 34.28 ? C12 S8Y 1217 A 1 HETATM 13 C C13 S8Y . . . J 5 -32.943 34.166 -1.806 1 29.84 ? C13 S8Y 1217 A 1 HETATM 14 C C14 S8Y . . . J 5 -37.614 33.177 -1.504 1 49.27 ? C14 S8Y 1217 A 1 HETATM 15 C C15 S8Y . . . J 5 -35.571 30.601 -1.27 1 40.42 ? C15 S8Y 1217 A 1 HETATM 16 C C16 S8Y . . . J 5 -31.835 35.952 1.905 1 36.39 ? C16 S8Y 1217 A 1 HETATM 17 C C17 S8Y . . . J 5 -35.759 35.744 0.513 1 51.06 ? C17 S8Y 1217 A 1 HETATM 18 C C18 S8Y . . . J 5 -37.813 36.09 -0.813 1 55.28 ? C18 S8Y 1217 A 1 HETATM 19 C C19 S8Y . . . J 5 -37.875 34.592 1.174 1 55.01 ? C19 S8Y 1217 A 1 HETATM 20 C C20 S8Y . . . J 5 -33.981 28.986 -0.418 1 42.17 ? C20 S8Y 1217 A 1 HETATM 21 C C21 S8Y . . . J 5 -33.114 31.15 -1.261 1 38.58 ? C21 S8Y 1217 A 1 HETATM 22 C C22 S8Y . . . J 5 -37.088 32.161 -2.479 1 45.89 ? C22 S8Y 1217 A 1 HETATM 23 C C23 S8Y . . . J 5 -37.029 35.072 0.004 1 54.8 ? C23 S8Y 1217 A 1 HETATM 24 N N24 S8Y . . . J 5 -36.668 33.92 -0.811 1 51.12 ? N24 S8Y 1217 A 1 HETATM 25 N N25 S8Y . . . J 5 -35.776 31.751 -2.019 1 40.43 ? N25 S8Y 1217 A 1 HETATM 26 N N26 S8Y . . . J 5 -34.254 30.293 -0.969 1 41.14 ? N26 S8Y 1217 A 1 HETATM 27 O O27 S8Y . . . J 5 -32.084 35.011 -2.165 1 27.43 ? O27 S8Y 1217 A 1 HETATM 28 O O28 S8Y . . . J 5 -33.942 33.819 -2.49 1 28.49 ? O28 S8Y 1217 A 1 HETATM 29 O O29 S8Y . . . J 5 -38.823 33.305 -1.381 1 56.17 ? O29 S8Y 1217 A 1 HETATM 30 O O30 S8Y . . . J 5 -36.467 29.864 -0.881 1 35.4 ? O30 S8Y 1217 A 1 HETATM 31 O O31 S8Y . . . J 5 -32.035 34.853 2.8 1 36 ? O31 S8Y 1217 A 1 HETATM 32 O O32 S8Y . . . J 5 -32.363 35.731 0.589 1 36.98 ? O32 S8Y 1217 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #