data_4CFE # _model_server_result.job_id PgNeglePTRVxM9R8DHNFAQ _model_server_result.datetime_utc '2025-01-05 02:47:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1552}' # _entry.id 4CFE # _exptl.entry_id 4CFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.42 _cell.angle_gamma 90 _cell.entry_id 4CFE _cell.length_a 76.03 _cell.length_b 134.141 _cell.length_c 140.558 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,F,I,J,N,O,P,S,T,V 1 1 A,B,E,G,H,K,L,M,Q,R,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 190 A ARG 171 1_555 A N TPO 191 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 191 A TPO 172 1_555 A N SER 192 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C ARG 123 B ARG 107 1_555 B N SEP 124 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C SEP 124 B SEP 108 1_555 B N HIS 125 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C ARG 190 C ARG 171 1_555 C N TPO 191 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C C TPO 191 C TPO 172 1_555 C N SER 192 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 D C ARG 123 D ARG 107 1_555 D N SEP 124 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C SEP 124 D SEP 108 1_555 D N HIS 125 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 400 n n O4 C21 STU sing 401 n n C25 C24 STU sing 402 n n C25 N3 STU sing 403 n n C25 H25 STU sing 404 n n C24 C23 STU sing 405 n n C24 H241 STU sing 406 n n C24 H242 STU sing 407 n n C23 C22 STU sing 408 n n C23 N4 STU sing 409 n n C23 H23 STU sing 410 n n C22 C21 STU sing 411 n n C22 O6 STU sing 412 n n C22 H22 STU sing 413 n n C21 C26 STU sing 414 n n C21 N2 STU sing 415 n n C26 H261 STU sing 416 n n C26 H262 STU sing 417 n n C26 H263 STU sing 418 n n N2 C18 STU sing 419 n y N2 C17 STU sing 420 n y C18 C19 STU doub 421 n y C18 C11 STU sing 422 n y C19 C6 STU sing 423 n y C19 N3 STU sing 424 n y C6 C7 STU doub 425 n y C6 C5 STU sing 426 n y C7 C10 STU sing 427 n y C7 C8 STU sing 428 n n C10 C11 STU doub 429 n y C10 C9 STU sing 430 n n C11 C12 STU sing 431 n y C12 C17 STU doub 432 n y C12 C13 STU sing 433 n y C17 C16 STU sing 434 n y C16 C15 STU doub 435 n y C16 H16 STU sing 436 n n C15 C14 STU sing 437 n y C15 H15 STU sing 438 n n C14 C13 STU doub 439 n y C14 H14 STU sing 440 n n C13 H13 STU sing 441 n n C9 N1 STU sing 442 n n C9 H91 STU sing 443 n n C9 H92 STU sing 444 n n N1 C8 STU sing 445 n n N1 HN1 STU sing 446 n n C8 O5 STU doub 447 n n C5 C20 STU doub 448 n y C5 C4 STU sing 449 n y C20 C1 STU sing 450 n y C20 N3 STU sing 451 n y C1 C2 STU doub 452 n y C1 H1 STU sing 453 n n C2 C3 STU sing 454 n y C2 H2 STU sing 455 n n C3 C4 STU doub 456 n y C3 H3 STU sing 457 n n C4 H4 STU sing 458 n n O6 C27 STU sing 459 n n C27 H271 STU sing 460 n n C27 H272 STU sing 461 n n C27 H273 STU sing 462 n n N4 C28 STU sing 463 n n N4 HN4 STU sing 464 n n C28 H281 STU sing 465 n n C28 H282 STU sing 466 n n C28 H283 STU sing 467 n n # _atom_sites.entry_id 4CFE _atom_sites.fract_transf_matrix[1][1] 0.013153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000556 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 STU A 1 1552 1552 STU STU . H 5 992 A 1 1553 1553 992 992 . I 4 STU C 1 1552 1552 STU STU . J 5 992 C 1 1553 1553 992 992 . K 6 AMP E 1 1326 1326 AMP AMP . L 6 AMP E 1 1327 1327 AMP AMP . M 6 AMP E 1 1328 1328 AMP AMP . N 6 AMP F 1 1326 1326 AMP AMP . O 6 AMP F 1 1327 1327 AMP AMP . P 6 AMP F 1 1328 1328 AMP AMP . Q 7 HOH A 1 2001 2001 HOH HOH . Q 7 HOH A 2 2002 2002 HOH HOH . Q 7 HOH A 3 2003 2003 HOH HOH . Q 7 HOH A 4 2004 2004 HOH HOH . Q 7 HOH A 5 2005 2005 HOH HOH . Q 7 HOH A 6 2006 2006 HOH HOH . Q 7 HOH A 7 2007 2007 HOH HOH . Q 7 HOH A 8 2008 2008 HOH HOH . Q 7 HOH A 9 2009 2009 HOH HOH . Q 7 HOH A 10 2010 2010 HOH HOH . Q 7 HOH A 11 2011 2011 HOH HOH . Q 7 HOH A 12 2012 2012 HOH HOH . Q 7 HOH A 13 2013 2013 HOH HOH . R 7 HOH B 1 2001 2001 HOH HOH . R 7 HOH B 2 2002 2002 HOH HOH . R 7 HOH B 3 2003 2003 HOH HOH . R 7 HOH B 4 2004 2004 HOH HOH . R 7 HOH B 5 2005 2005 HOH HOH . R 7 HOH B 6 2006 2006 HOH HOH . S 7 HOH C 1 2001 2001 HOH HOH . S 7 HOH C 2 2002 2002 HOH HOH . S 7 HOH C 3 2003 2003 HOH HOH . S 7 HOH C 4 2004 2004 HOH HOH . S 7 HOH C 5 2005 2005 HOH HOH . S 7 HOH C 6 2006 2006 HOH HOH . T 7 HOH D 1 2001 2001 HOH HOH . U 7 HOH E 1 2001 2001 HOH HOH . U 7 HOH E 2 2002 2002 HOH HOH . V 7 HOH F 1 2001 2001 HOH HOH . V 7 HOH F 2 2002 2002 HOH HOH . V 7 HOH F 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . I 4 510.582 57.85 1042.833 1 43.04 ? O4 STU 1552 C 1 HETATM 2 C C25 STU . . . I 4 509.886 58.975 1043.281 1 45.1 ? C25 STU 1552 C 1 HETATM 3 C C24 STU . . . I 4 509.564 59.979 1042.187 1 45.64 ? C24 STU 1552 C 1 HETATM 4 C C23 STU . . . I 4 509.959 59.359 1040.841 1 42.82 ? C23 STU 1552 C 1 HETATM 5 C C22 STU . . . I 4 511.466 59.078 1040.912 1 40.03 ? C22 STU 1552 C 1 HETATM 6 C C21 STU . . . I 4 511.692 58.044 1042.005 1 39.41 ? C21 STU 1552 C 1 HETATM 7 C C26 STU . . . I 4 511.772 56.698 1041.28 1 36.81 ? C26 STU 1552 C 1 HETATM 8 N N2 STU . . . I 4 512.931 58.358 1042.745 1 42.01 ? N2 STU 1552 C 1 HETATM 9 C C18 STU . . . I 4 512.92 59.086 1043.94 1 42.93 ? C18 STU 1552 C 1 HETATM 10 C C19 STU . . . I 4 511.855 59.63 1044.675 1 44.33 ? C19 STU 1552 C 1 HETATM 11 C C6 STU . . . I 4 512.093 60.325 1045.865 1 46.08 ? C6 STU 1552 C 1 HETATM 12 C C7 STU . . . I 4 513.42 60.48 1046.33 1 46.49 ? C7 STU 1552 C 1 HETATM 13 C C10 STU . . . I 4 514.468 59.941 1045.595 1 44.34 ? C10 STU 1552 C 1 HETATM 14 C C11 STU . . . I 4 514.228 59.253 1044.415 1 43.57 ? C11 STU 1552 C 1 HETATM 15 C C12 STU . . . I 4 515.094 58.592 1043.449 1 42.41 ? C12 STU 1552 C 1 HETATM 16 C C17 STU . . . I 4 514.259 58.06 1042.438 1 41.13 ? C17 STU 1552 C 1 HETATM 17 C C16 STU . . . I 4 514.865 57.371 1041.381 1 40.16 ? C16 STU 1552 C 1 HETATM 18 C C15 STU . . . I 4 516.242 57.234 1041.377 1 39.84 ? C15 STU 1552 C 1 HETATM 19 C C14 STU . . . I 4 517.036 57.762 1042.372 1 40.8 ? C14 STU 1552 C 1 HETATM 20 C C13 STU . . . I 4 516.48 58.451 1043.432 1 42.23 ? C13 STU 1552 C 1 HETATM 21 C C9 STU . . . I 4 515.737 60.271 1046.339 1 44.05 ? C9 STU 1552 C 1 HETATM 22 N N1 STU . . . I 4 515.322 61.024 1047.527 1 47.8 ? N1 STU 1552 C 1 HETATM 23 C C8 STU . . . I 4 513.984 61.142 1047.516 1 48.85 ? C8 STU 1552 C 1 HETATM 24 O O5 STU . . . I 4 513.337 61.716 1048.369 1 51.97 ? O5 STU 1552 C 1 HETATM 25 C C5 STU . . . I 4 510.782 60.742 1046.358 1 48.53 ? C5 STU 1552 C 1 HETATM 26 C C20 STU . . . I 4 509.828 60.272 1045.427 1 47.91 ? C20 STU 1552 C 1 HETATM 27 C C1 STU . . . I 4 508.469 60.512 1045.616 1 49.54 ? C1 STU 1552 C 1 HETATM 28 C C2 STU . . . I 4 508.106 61.226 1046.745 1 52.05 ? C2 STU 1552 C 1 HETATM 29 C C3 STU . . . I 4 509.039 61.687 1047.656 1 52.71 ? C3 STU 1552 C 1 HETATM 30 C C4 STU . . . I 4 510.394 61.46 1047.491 1 50.63 ? C4 STU 1552 C 1 HETATM 31 N N3 STU . . . I 4 510.526 59.606 1044.425 1 45.68 ? N3 STU 1552 C 1 HETATM 32 O O6 STU . . . I 4 512.11 60.291 1041.316 1 38.36 ? O6 STU 1552 C 1 HETATM 33 C C27 STU . . . I 4 512.932 60.745 1040.243 1 36.33 ? C27 STU 1552 C 1 HETATM 34 N N4 STU . . . I 4 509.631 60.276 1039.737 1 44.02 ? N4 STU 1552 C 1 HETATM 35 C C28 STU . . . I 4 509.907 59.568 1038.478 1 41.69 ? C28 STU 1552 C 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 35 #