data_4CFE # _model_server_result.job_id ANg1oDNJxazbtIbGGUyFoA _model_server_result.datetime_utc '2025-07-15 04:38:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1553}' # _entry.id 4CFE # _exptl.entry_id 4CFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.871 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[6-chloranyl-5-(1-methylindol-5-yl)-1H-benzimidazol-2-yl]oxy]-2-methyl-benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.42 _cell.angle_gamma 90 _cell.entry_id 4CFE _cell.length_a 76.03 _cell.length_b 134.141 _cell.length_c 140.558 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,F,I,J,N,O,P,S,T,V 1 1 A,B,E,G,H,K,L,M,Q,R,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 190 A ARG 171 1_555 A N TPO 191 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 191 A TPO 172 1_555 A N SER 192 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C ARG 123 B ARG 107 1_555 B N SEP 124 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C SEP 124 B SEP 108 1_555 B N HIS 125 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C ARG 190 C ARG 171 1_555 C N TPO 191 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C C TPO 191 C TPO 172 1_555 C N SER 192 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 D C ARG 123 D ARG 107 1_555 D N SEP 124 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C SEP 124 D SEP 108 1_555 D N HIS 125 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C24 H18 Cl N3 O3' _chem_comp.formula_weight 431.871 _chem_comp.id 992 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[6-chloranyl-5-(1-methylindol-5-yl)-1H-benzimidazol-2-yl]oxy]-2-methyl-benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C21 992 sing 1 n y C6 C5 992 doub 2 n y C6 C8 992 sing 3 n y C21 C2 992 doub 4 n y C5 N7 992 sing 5 n y C5 C4 992 sing 6 n y N7 C1 992 sing 7 n n N7 C9 992 sing 8 n y C4 C3 992 doub 9 n y C3 C2 992 sing 10 n y C2 C7 992 sing 11 n n C7 C10 992 sing 12 n y C7 C14 992 doub 13 n y C10 C11 992 doub 14 n y C10 CL1 992 sing 15 n n C11 C12 992 sing 16 n y C12 C13 992 doub 17 n y C12 N21 992 sing 18 n y C13 C14 992 sing 19 n y C13 N22 992 sing 20 n y N21 C23 992 sing 21 n y N22 C23 992 doub 22 n y C23 O25 992 sing 23 n n O25 C26 992 sing 24 n n C26 C27 992 sing 25 n y C26 C31 992 doub 26 n y C27 C28 992 doub 27 n y C28 C29 992 sing 28 n y C29 C30 992 doub 29 n y C29 C32 992 sing 30 n n C30 C31 992 sing 31 n y C30 C18 992 sing 32 n n C8 C9 992 doub 33 n y C18 O19 992 sing 34 n n C18 O20 992 doub 35 n n C21 H21 992 sing 36 n n C8 H8 992 sing 37 n n C4 H4 992 sing 38 n n C1 H11C 992 sing 39 n n C1 H12C 992 sing 40 n n C1 H13C 992 sing 41 n n C9 H9 992 sing 42 n n C3 H3 992 sing 43 n n C14 H14 992 sing 44 n n C11 H11 992 sing 45 n n N21 HA 992 sing 46 n n C27 H27 992 sing 47 n n C31 H31 992 sing 48 n n C28 H28 992 sing 49 n n C32 H321 992 sing 50 n n C32 H322 992 sing 51 n n C32 H323 992 sing 52 n n O19 H19 992 sing 53 n n # _atom_sites.entry_id 4CFE _atom_sites.fract_transf_matrix[1][1] 0.013153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000556 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 STU A 1 1552 1552 STU STU . H 5 992 A 1 1553 1553 992 992 . I 4 STU C 1 1552 1552 STU STU . J 5 992 C 1 1553 1553 992 992 . K 6 AMP E 1 1326 1326 AMP AMP . L 6 AMP E 1 1327 1327 AMP AMP . M 6 AMP E 1 1328 1328 AMP AMP . N 6 AMP F 1 1326 1326 AMP AMP . O 6 AMP F 1 1327 1327 AMP AMP . P 6 AMP F 1 1328 1328 AMP AMP . Q 7 HOH A 1 2001 2001 HOH HOH . Q 7 HOH A 2 2002 2002 HOH HOH . Q 7 HOH A 3 2003 2003 HOH HOH . Q 7 HOH A 4 2004 2004 HOH HOH . Q 7 HOH A 5 2005 2005 HOH HOH . Q 7 HOH A 6 2006 2006 HOH HOH . Q 7 HOH A 7 2007 2007 HOH HOH . Q 7 HOH A 8 2008 2008 HOH HOH . Q 7 HOH A 9 2009 2009 HOH HOH . Q 7 HOH A 10 2010 2010 HOH HOH . Q 7 HOH A 11 2011 2011 HOH HOH . Q 7 HOH A 12 2012 2012 HOH HOH . Q 7 HOH A 13 2013 2013 HOH HOH . R 7 HOH B 1 2001 2001 HOH HOH . R 7 HOH B 2 2002 2002 HOH HOH . R 7 HOH B 3 2003 2003 HOH HOH . R 7 HOH B 4 2004 2004 HOH HOH . R 7 HOH B 5 2005 2005 HOH HOH . R 7 HOH B 6 2006 2006 HOH HOH . S 7 HOH C 1 2001 2001 HOH HOH . S 7 HOH C 2 2002 2002 HOH HOH . S 7 HOH C 3 2003 2003 HOH HOH . S 7 HOH C 4 2004 2004 HOH HOH . S 7 HOH C 5 2005 2005 HOH HOH . S 7 HOH C 6 2006 2006 HOH HOH . T 7 HOH D 1 2001 2001 HOH HOH . U 7 HOH E 1 2001 2001 HOH HOH . U 7 HOH E 2 2002 2002 HOH HOH . V 7 HOH F 1 2001 2001 HOH HOH . V 7 HOH F 2 2002 2002 HOH HOH . V 7 HOH F 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 992 . . . H 5 476.32 41.649 982.657 1 68.77 ? C6 992 1553 A 1 HETATM 2 C C21 992 . . . H 5 477.209 41.774 983.757 1 66.22 ? C21 992 1553 A 1 HETATM 3 C C5 992 . . . H 5 475.144 42.451 982.568 1 70.92 ? C5 992 1553 A 1 HETATM 4 N N7 992 . . . H 5 474.526 42.074 981.401 1 72.42 ? N7 992 1553 A 1 HETATM 5 C C4 992 . . . H 5 474.876 43.374 983.587 1 72.33 ? C4 992 1553 A 1 HETATM 6 C C3 992 . . . H 5 475.771 43.483 984.657 1 71.06 ? C3 992 1553 A 1 HETATM 7 C C2 992 . . . H 5 476.914 42.712 984.755 1 67.36 ? C2 992 1553 A 1 HETATM 8 C C1 992 . . . H 5 473.281 42.645 980.918 1 75.62 ? C1 992 1553 A 1 HETATM 9 C C7 992 . . . H 5 477.804 42.91 985.958 1 64.93 ? C7 992 1553 A 1 HETATM 10 C C10 992 . . . H 5 479.146 43.327 985.831 1 62.88 ? C10 992 1553 A 1 HETATM 11 C C11 992 . . . H 5 479.933 43.509 986.983 1 61.43 ? C11 992 1553 A 1 HETATM 12 C C12 992 . . . H 5 479.394 43.288 988.252 1 64.21 ? C12 992 1553 A 1 HETATM 13 C C13 992 . . . H 5 478.035 42.873 988.368 1 64.36 ? C13 992 1553 A 1 HETATM 14 C C14 992 . . . H 5 477.265 42.693 987.229 1 65.8 ? C14 992 1553 A 1 HETATM 15 N N21 992 . . . H 5 479.895 43.377 989.527 1 63.85 ? N21 992 1553 A 1 HETATM 16 N N22 992 . . . H 5 477.762 42.728 989.72 1 67.82 ? N22 992 1553 A 1 HETATM 17 C C23 992 . . . H 5 478.889 43.037 990.324 1 65.58 ? C23 992 1553 A 1 HETATM 18 O O25 992 . . . H 5 479.028 43.017 991.725 1 65.55 ? O25 992 1553 A 1 HETATM 19 C C26 992 . . . H 5 478.12 42.121 992.32 1 67.45 ? C26 992 1553 A 1 HETATM 20 C C27 992 . . . H 5 478.477 40.818 992.531 1 65.06 ? C27 992 1553 A 1 HETATM 21 C C28 992 . . . H 5 477.6 39.928 993.115 1 67.53 ? C28 992 1553 A 1 HETATM 22 C C29 992 . . . H 5 476.311 40.343 993.513 1 73.16 ? C29 992 1553 A 1 HETATM 23 C C30 992 . . . H 5 475.932 41.709 993.297 1 76.64 ? C30 992 1553 A 1 HETATM 24 C C31 992 . . . H 5 476.859 42.573 992.701 1 72.8 ? C31 992 1553 A 1 HETATM 25 C C32 992 . . . H 5 475.351 39.365 994.155 1 76.52 ? C32 992 1553 A 1 HETATM 26 CL CL1 992 . . . H 5 479.846 43.61 984.268 1 62.79 ? CL1 992 1553 A 1 HETATM 27 C C8 992 . . . H 5 476.343 40.817 981.515 1 70.15 ? C8 992 1553 A 1 HETATM 28 C C9 992 . . . H 5 475.21 41.128 980.781 1 72.98 ? C9 992 1553 A 1 HETATM 29 C C18 992 . . . H 5 474.599 42.204 993.69 1 84.88 ? C18 992 1553 A 1 HETATM 30 O O19 992 . . . H 5 473.669 42.258 992.833 1 88.22 ? O19 992 1553 A 1 HETATM 31 O O20 992 . . . H 5 474.394 42.57 994.862 1 88.83 ? O20 992 1553 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #