data_4CFF
#
_model_server_result.job_id            tr99VH29_DwQx5o6OuvSeQ 
_model_server_result.datetime_utc      '2024-11-21 17:50:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cff 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1325}' 
#
_entry.id    4CFF 
#
_exptl.entry_id    4CFF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.04 
_cell.angle_gamma         90 
_cell.entry_id            4CFF 
_cell.length_a            76.019 
_cell.length_b            134.787 
_cell.length_c            141.286 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CFF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,D,F,I,J,M,N 1 1 
A,B,E,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 190 A ARG 171 1_555 A N TPO 191 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C TPO 191 A TPO 172 1_555 A N SER 192 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C ARG 123 B ARG 107 1_555 B N SEP 124 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C SEP 124 B SEP 108 1_555 B N HIS 125 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 C C ARG 190 C ARG 171 1_555 C N TPO 191 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 C C TPO 191 C TPO 172 1_555 C N SER 192 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 D C ARG 123 D ARG 107 1_555 D N SEP 124 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 D C SEP 124 D SEP 108 1_555 D N HIS 125 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     4CFF 
_atom_sites.fract_transf_matrix[1][1]    0.013155 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000699 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007419 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007088 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 STU A 1 1552 1552 STU STU . 
H 5 C1V B 1 1271 1271 C1V C1V . 
I 4 STU C 1 1552 1552 STU STU . 
J 5 C1V C 1 1553 1553 C1V C1V . 
K 6 AMP E 1 1326 1326 AMP AMP . 
L 6 AMP E 1 1327 1327 AMP AMP . 
M 6 AMP F 1 1325 1325 AMP AMP . 
N 6 AMP F 1 1326 1326 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . M 6 -16.063 -63.018 176.669 1 62.86 ? P AMP 1325 F 1 
HETATM 2 O O1P AMP . . . M 6 -16.24 -63.775 175.374 1 59.82 ? O1P AMP 1325 F 1 
HETATM 3 O O2P AMP . . . M 6 -16.727 -61.662 176.687 1 66.83 ? O2P AMP 1325 F 1 
HETATM 4 O O3P AMP . . . M 6 -14.657 -63.024 177.219 1 58.08 ? O3P AMP 1325 F 1 
HETATM 5 O O5' AMP . . . M 6 -16.885 -63.87 177.737 1 63.86 ? O5' AMP 1325 F 1 
HETATM 6 C C5' AMP . . . M 6 -18.305 -63.788 177.807 1 68.39 ? C5' AMP 1325 F 1 
HETATM 7 C C4' AMP . . . M 6 -18.926 -65.091 178.249 1 69.62 ? C4' AMP 1325 F 1 
HETATM 8 O O4' AMP . . . M 6 -18.712 -66.094 177.22 1 65.48 ? O4' AMP 1325 F 1 
HETATM 9 C C3' AMP . . . M 6 -18.368 -65.679 179.547 1 70.3 ? C3' AMP 1325 F 1 
HETATM 10 O O3' AMP . . . M 6 -19.427 -66.279 180.29 1 74.99 ? O3' AMP 1325 F 1 
HETATM 11 C C2' AMP . . . M 6 -17.415 -66.765 179.053 1 66.17 ? C2' AMP 1325 F 1 
HETATM 12 O O2' AMP . . . M 6 -17.199 -67.823 179.965 1 66.78 ? O2' AMP 1325 F 1 
HETATM 13 C C1' AMP . . . M 6 -18.118 -67.242 177.788 1 63.76 ? C1' AMP 1325 F 1 
HETATM 14 N N9 AMP . . . M 6 -17.212 -67.825 176.798 1 58.82 ? N9 AMP 1325 F 1 
HETATM 15 C C8 AMP . . . M 6 -16.314 -67.142 176.068 1 59.83 ? C8 AMP 1325 F 1 
HETATM 16 N N7 AMP . . . M 6 -15.622 -67.972 175.246 1 56.51 ? N7 AMP 1325 F 1 
HETATM 17 C C5 AMP . . . M 6 -16.081 -69.219 175.452 1 57.22 ? C5 AMP 1325 F 1 
HETATM 18 C C6 AMP . . . M 6 -15.786 -70.567 174.913 1 55.47 ? C6 AMP 1325 F 1 
HETATM 19 N N6 AMP . . . M 6 -14.834 -70.747 173.964 1 52.5 ? N6 AMP 1325 F 1 
HETATM 20 N N1 AMP . . . M 6 -16.498 -71.603 175.408 1 57.52 ? N1 AMP 1325 F 1 
HETATM 21 C C2 AMP . . . M 6 -17.447 -71.435 176.344 1 60.99 ? C2 AMP 1325 F 1 
HETATM 22 N N3 AMP . . . M 6 -17.763 -70.242 176.876 1 59.27 ? N3 AMP 1325 F 1 
HETATM 23 C C4 AMP . . . M 6 -17.127 -69.117 176.479 1 57.33 ? C4 AMP 1325 F 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#