data_4CFF # _model_server_result.job_id Ax-0jviUDRMjAguPeNt4jA _model_server_result.datetime_utc '2024-11-21 17:50:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1326}' # _entry.id 4CFF # _exptl.entry_id 4CFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.04 _cell.angle_gamma 90 _cell.entry_id 4CFF _cell.length_a 76.019 _cell.length_b 134.787 _cell.length_c 141.286 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,F,I,J,M,N 1 1 A,B,E,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 190 A ARG 171 1_555 A N TPO 191 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 191 A TPO 172 1_555 A N SER 192 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ARG 123 B ARG 107 1_555 B N SEP 124 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C SEP 124 B SEP 108 1_555 B N HIS 125 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C ARG 190 C ARG 171 1_555 C N TPO 191 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C C TPO 191 C TPO 172 1_555 C N SER 192 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 D C ARG 123 D ARG 107 1_555 D N SEP 124 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C SEP 124 D SEP 108 1_555 D N HIS 125 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4CFF _atom_sites.fract_transf_matrix[1][1] 0.013155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 STU A 1 1552 1552 STU STU . H 5 C1V B 1 1271 1271 C1V C1V . I 4 STU C 1 1552 1552 STU STU . J 5 C1V C 1 1553 1553 C1V C1V . K 6 AMP E 1 1326 1326 AMP AMP . L 6 AMP E 1 1327 1327 AMP AMP . M 6 AMP F 1 1325 1325 AMP AMP . N 6 AMP F 1 1326 1326 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . N 6 -7.503 -61.711 173.645 1 62.35 ? P AMP 1326 F 1 HETATM 2 O O1P AMP . . . N 6 -6.911 -61.239 174.953 1 64.13 ? O1P AMP 1326 F 1 HETATM 3 O O2P AMP . . . N 6 -7.987 -60.609 172.732 1 62.96 ? O2P AMP 1326 F 1 HETATM 4 O O3P AMP . . . N 6 -8.449 -62.883 173.767 1 61.93 ? O3P AMP 1326 F 1 HETATM 5 O O5' AMP . . . N 6 -6.26 -62.311 172.858 1 56.29 ? O5' AMP 1326 F 1 HETATM 6 C C5' AMP . . . N 6 -5.108 -61.515 172.6 1 56.4 ? C5' AMP 1326 F 1 HETATM 7 C C4' AMP . . . N 6 -3.891 -62.371 172.355 1 55.11 ? C4' AMP 1326 F 1 HETATM 8 O O4' AMP . . . N 6 -3.711 -63.264 173.488 1 55.29 ? O4' AMP 1326 F 1 HETATM 9 C C3' AMP . . . N 6 -3.969 -63.262 171.117 1 53.36 ? C3' AMP 1326 F 1 HETATM 10 O O3' AMP . . . N 6 -2.668 -63.403 170.549 1 53.29 ? O3' AMP 1326 F 1 HETATM 11 C C2' AMP . . . N 6 -4.428 -64.598 171.693 1 52.82 ? C2' AMP 1326 F 1 HETATM 12 O O2' AMP . . . N 6 -4.091 -65.721 170.909 1 52.29 ? O2' AMP 1326 F 1 HETATM 13 C C1' AMP . . . N 6 -3.723 -64.608 173.046 1 53.86 ? C1' AMP 1326 F 1 HETATM 14 N N9 AMP . . . N 6 -4.401 -65.411 174.065 1 54.03 ? N9 AMP 1326 F 1 HETATM 15 C C8 AMP . . . N 6 -5.724 -65.424 174.31 1 54.31 ? C8 AMP 1326 F 1 HETATM 16 N N7 AMP . . . N 6 -6.02 -66.285 175.318 1 55.36 ? N7 AMP 1326 F 1 HETATM 17 C C5 AMP . . . N 6 -4.87 -66.844 175.733 1 55.38 ? C5 AMP 1326 F 1 HETATM 18 C C6 AMP . . . N 6 -4.473 -67.835 176.762 1 56.41 ? C6 AMP 1326 F 1 HETATM 19 N N6 AMP . . . N 6 -5.39 -68.417 177.57 1 57.35 ? N6 AMP 1326 F 1 HETATM 20 N N1 AMP . . . N 6 -3.165 -68.141 176.869 1 57.24 ? N1 AMP 1326 F 1 HETATM 21 C C2 AMP . . . N 6 -2.247 -67.567 176.07 1 57.11 ? C2 AMP 1326 F 1 HETATM 22 N N3 AMP . . . N 6 -2.534 -66.662 175.117 1 55.84 ? N3 AMP 1326 F 1 HETATM 23 C C4 AMP . . . N 6 -3.808 -66.267 174.899 1 54.81 ? C4 AMP 1326 F 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #