data_4CFH # _model_server_result.job_id S2x7_LUCJLERph4PmR-S0g _model_server_result.datetime_utc '2024-11-21 20:55:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1326}' # _entry.id 4CFH # _exptl.entry_id 4CFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CFH _cell.length_a 133.917 _cell.length_b 133.917 _cell.length_c 141.896 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 190 A ARG 171 1_555 A N TPO 191 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C TPO 191 A TPO 172 1_555 A N SER 192 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4CFH _atom_sites.fract_transf_matrix[1][1] 0.007467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 STU A 1 1550 1550 STU STU . F 6 AMP E 1 1325 1325 AMP AMP . G 6 AMP E 1 1326 1326 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . G 6 -13.765 8.652 -19.273 1 80.58 ? P AMP 1326 E 1 HETATM 2 O O1P AMP . . . G 6 -12.624 8.64 -20.261 1 80.42 ? O1P AMP 1326 E 1 HETATM 3 O O2P AMP . . . G 6 -14.796 9.725 -19.527 1 81.76 ? O2P AMP 1326 E 1 HETATM 4 O O3P AMP . . . G 6 -13.366 8.514 -17.824 1 80.42 ? O3P AMP 1326 E 1 HETATM 5 O O5' AMP . . . G 6 -14.539 7.29 -19.556 1 78.46 ? O5' AMP 1326 E 1 HETATM 6 C C5' AMP . . . G 6 -15.305 7.11 -20.742 1 81.56 ? C5' AMP 1326 E 1 HETATM 7 C C4' AMP . . . G 6 -15.904 5.727 -20.807 1 76.65 ? C4' AMP 1326 E 1 HETATM 8 O O4' AMP . . . G 6 -14.837 4.753 -20.678 1 75.85 ? O4' AMP 1326 E 1 HETATM 9 C C3' AMP . . . G 6 -16.915 5.403 -19.714 1 82.98 ? C3' AMP 1326 E 1 HETATM 10 O O3' AMP . . . G 6 -17.9 4.506 -20.225 1 84.4 ? O3' AMP 1326 E 1 HETATM 11 C C2' AMP . . . G 6 -16.067 4.694 -18.661 1 82.55 ? C2' AMP 1326 E 1 HETATM 12 O O2' AMP . . . G 6 -16.782 3.8 -17.835 1 78.03 ? O2' AMP 1326 E 1 HETATM 13 C C1' AMP . . . G 6 -15.028 3.968 -19.515 1 81.94 ? C1' AMP 1326 E 1 HETATM 14 N N9 AMP . . . G 6 -13.727 3.831 -18.855 1 80.77 ? N9 AMP 1326 E 1 HETATM 15 C C8 AMP . . . G 6 -13.07 4.826 -18.231 1 78.27 ? C8 AMP 1326 E 1 HETATM 16 N N7 AMP . . . G 6 -11.894 4.387 -17.716 1 77.25 ? N7 AMP 1326 E 1 HETATM 17 C C5 AMP . . . G 6 -11.788 3.08 -18.011 1 77.89 ? C5 AMP 1326 E 1 HETATM 18 C C6 AMP . . . G 6 -10.792 2.012 -17.766 1 77.72 ? C6 AMP 1326 E 1 HETATM 19 N N6 AMP . . . G 6 -9.649 2.264 -17.083 1 77.5 ? N6 AMP 1326 E 1 HETATM 20 N N1 AMP . . . G 6 -11.065 0.78 -18.242 1 80.6 ? N1 AMP 1326 E 1 HETATM 21 C C2 AMP . . . G 6 -12.197 0.52 -18.921 1 84.27 ? C2 AMP 1326 E 1 HETATM 22 N N3 AMP . . . G 6 -13.142 1.439 -19.183 1 84.88 ? N3 AMP 1326 E 1 HETATM 23 C C4 AMP . . . G 6 -13 2.716 -18.758 1 81.59 ? C4 AMP 1326 E 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #