data_4CGF
#
_model_server_result.job_id            MvqwE1S-761TytvcxJAUzg 
_model_server_result.datetime_utc      '2024-11-08 04:03:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cgf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1216}' 
#
_entry.id    4CGF 
#
_exptl.entry_id    4CGF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              311.289 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-{[(3S)-2-oxo-2,3-dihydro-1H-indol-3-yl]methyl}-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CGF 
_cell.length_a            71.634 
_cell.length_b            71.634 
_cell.length_c            67.127 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CGF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 S N N 
#
_chem_comp.formula           'C17 H13 N O5' 
_chem_comp.formula_weight    311.289 
_chem_comp.id                UJ6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-{[(3S)-2-oxo-2,3-dihydro-1H-indol-3-yl]methyl}-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 UJ6 doub 377 n n 
N19 C2 UJ6 sing 378 n n 
C2 C3 UJ6 sing 379 n n 
C3 C17 UJ6 sing 380 n n 
C3 C4 UJ6 sing 381 n n 
C3 H3 UJ6 sing 382 n n 
C4 C5 UJ6 sing 383 n n 
C4 H4 UJ6 sing 384 n n 
C4 H4A UJ6 sing 385 n n 
C13 C5 UJ6 doub 386 n y 
C5 C6 UJ6 sing 387 n y 
C6 C7 UJ6 doub 388 n y 
C6 H6 UJ6 sing 389 n n 
C8 C7 UJ6 sing 390 n y 
C7 H7 UJ6 sing 391 n n 
C12 C8 UJ6 doub 392 n y 
C8 O9 UJ6 sing 393 n n 
C10 O9 UJ6 sing 394 n n 
O11 C10 UJ6 sing 395 n n 
C10 H10 UJ6 sing 396 n n 
C10 H10A UJ6 sing 397 n n 
O11 C12 UJ6 sing 398 n n 
C13 C12 UJ6 sing 399 n y 
C14 C13 UJ6 sing 400 n n 
O16 C14 UJ6 doub 401 n n 
O15 C14 UJ6 sing 402 n n 
O15 HO15 UJ6 sing 403 n n 
C18 C17 UJ6 doub 404 n y 
C17 C23 UJ6 sing 405 n y 
N19 C18 UJ6 sing 406 n n 
C18 C20 UJ6 sing 407 n y 
N19 HN19 UJ6 sing 408 n n 
C20 C21 UJ6 doub 409 n y 
C20 H20 UJ6 sing 410 n n 
C21 C22 UJ6 sing 411 n y 
C21 H21 UJ6 sing 412 n n 
C23 C22 UJ6 doub 413 n y 
C22 H22 UJ6 sing 414 n n 
C23 H23 UJ6 sing 415 n n 
#
_atom_sites.entry_id                     4CGF 
_atom_sites.fract_transf_matrix[1][1]    0.01396 
_atom_sites.fract_transf_matrix[1][2]    0.00806 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016119 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014897 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1210 1210 SO4 SO4 . 
D 2 SO4 A 1 1211 1211 SO4 SO4 . 
E 3 ACT A 1 1212 1212 ACT ACT . 
F 3 ACT A 1 1213 1213 ACT ACT . 
G 3 ACT A 1 1214 1214 ACT ACT . 
H 4 EDO A 1 1215 1215 EDO EDO . 
I 5 UJ6 A 1 1216 1216 UJ6 UJ6 . 
J 2 SO4 B 1 1210 1210 SO4 SO4 . 
K 2 SO4 B 1 1211 1211 SO4 SO4 . 
L 3 ACT B 1 1212 1212 ACT ACT . 
M 3 ACT B 1 1213 1213 ACT ACT . 
N 3 ACT B 1 1214 1214 ACT ACT . 
O 3 ACT B 1 1215 1215 ACT ACT . 
P 3 ACT B 1 1216 1216 ACT ACT . 
Q 4 EDO B 1 1217 1217 EDO EDO . 
R 4 EDO B 1 1218 1218 EDO EDO . 
S 5 UJ6 B 1 1219 1219 UJ6 UJ6 . 
T 6 HOH A 1 2001 2001 HOH HOH . 
T 6 HOH A 2 2002 2002 HOH HOH . 
T 6 HOH A 3 2003 2003 HOH HOH . 
T 6 HOH A 4 2004 2004 HOH HOH . 
T 6 HOH A 5 2005 2005 HOH HOH . 
T 6 HOH A 6 2006 2006 HOH HOH . 
T 6 HOH A 7 2007 2007 HOH HOH . 
T 6 HOH A 8 2008 2008 HOH HOH . 
T 6 HOH A 9 2009 2009 HOH HOH . 
T 6 HOH A 10 2010 2010 HOH HOH . 
T 6 HOH A 11 2011 2011 HOH HOH . 
T 6 HOH A 12 2012 2012 HOH HOH . 
T 6 HOH A 13 2013 2013 HOH HOH . 
T 6 HOH A 14 2014 2014 HOH HOH . 
T 6 HOH A 15 2015 2015 HOH HOH . 
T 6 HOH A 16 2016 2016 HOH HOH . 
T 6 HOH A 17 2017 2017 HOH HOH . 
T 6 HOH A 18 2018 2018 HOH HOH . 
T 6 HOH A 19 2019 2019 HOH HOH . 
T 6 HOH A 20 2020 2020 HOH HOH . 
T 6 HOH A 21 2021 2021 HOH HOH . 
T 6 HOH A 22 2022 2022 HOH HOH . 
T 6 HOH A 23 2023 2023 HOH HOH . 
T 6 HOH A 24 2024 2024 HOH HOH . 
T 6 HOH A 25 2025 2025 HOH HOH . 
T 6 HOH A 26 2026 2026 HOH HOH . 
T 6 HOH A 27 2027 2027 HOH HOH . 
T 6 HOH A 28 2028 2028 HOH HOH . 
T 6 HOH A 29 2029 2029 HOH HOH . 
T 6 HOH A 30 2030 2030 HOH HOH . 
T 6 HOH A 31 2031 2031 HOH HOH . 
T 6 HOH A 32 2032 2032 HOH HOH . 
T 6 HOH A 33 2033 2033 HOH HOH . 
T 6 HOH A 34 2034 2034 HOH HOH . 
T 6 HOH A 35 2035 2035 HOH HOH . 
T 6 HOH A 36 2036 2036 HOH HOH . 
T 6 HOH A 37 2037 2037 HOH HOH . 
T 6 HOH A 38 2038 2038 HOH HOH . 
T 6 HOH A 39 2039 2039 HOH HOH . 
T 6 HOH A 40 2040 2040 HOH HOH . 
T 6 HOH A 41 2041 2041 HOH HOH . 
T 6 HOH A 42 2042 2042 HOH HOH . 
T 6 HOH A 43 2043 2043 HOH HOH . 
T 6 HOH A 44 2044 2044 HOH HOH . 
T 6 HOH A 45 2045 2045 HOH HOH . 
T 6 HOH A 46 2046 2046 HOH HOH . 
T 6 HOH A 47 2047 2047 HOH HOH . 
T 6 HOH A 48 2048 2048 HOH HOH . 
T 6 HOH A 49 2049 2049 HOH HOH . 
T 6 HOH A 50 2050 2050 HOH HOH . 
T 6 HOH A 51 2051 2051 HOH HOH . 
T 6 HOH A 52 2052 2052 HOH HOH . 
T 6 HOH A 53 2053 2053 HOH HOH . 
T 6 HOH A 54 2054 2054 HOH HOH . 
T 6 HOH A 55 2055 2055 HOH HOH . 
T 6 HOH A 56 2056 2056 HOH HOH . 
T 6 HOH A 57 2057 2057 HOH HOH . 
T 6 HOH A 58 2058 2058 HOH HOH . 
T 6 HOH A 59 2059 2059 HOH HOH . 
T 6 HOH A 60 2060 2060 HOH HOH . 
T 6 HOH A 61 2061 2061 HOH HOH . 
T 6 HOH A 62 2062 2062 HOH HOH . 
T 6 HOH A 63 2063 2063 HOH HOH . 
T 6 HOH A 64 2064 2064 HOH HOH . 
T 6 HOH A 65 2065 2065 HOH HOH . 
T 6 HOH A 66 2066 2066 HOH HOH . 
T 6 HOH A 67 2067 2067 HOH HOH . 
T 6 HOH A 68 2068 2068 HOH HOH . 
T 6 HOH A 69 2069 2069 HOH HOH . 
T 6 HOH A 70 2070 2070 HOH HOH . 
T 6 HOH A 71 2071 2071 HOH HOH . 
T 6 HOH A 72 2072 2072 HOH HOH . 
T 6 HOH A 73 2073 2073 HOH HOH . 
T 6 HOH A 74 2074 2074 HOH HOH . 
T 6 HOH A 75 2075 2075 HOH HOH . 
T 6 HOH A 76 2076 2076 HOH HOH . 
T 6 HOH A 77 2077 2077 HOH HOH . 
T 6 HOH A 78 2078 2078 HOH HOH . 
T 6 HOH A 79 2079 2079 HOH HOH . 
T 6 HOH A 80 2080 2080 HOH HOH . 
T 6 HOH A 81 2081 2081 HOH HOH . 
T 6 HOH A 82 2082 2082 HOH HOH . 
T 6 HOH A 83 2083 2083 HOH HOH . 
T 6 HOH A 84 2084 2084 HOH HOH . 
T 6 HOH A 85 2085 2085 HOH HOH . 
T 6 HOH A 86 2086 2086 HOH HOH . 
T 6 HOH A 87 2087 2087 HOH HOH . 
U 6 HOH B 1 2001 2001 HOH HOH . 
U 6 HOH B 2 2002 2002 HOH HOH . 
U 6 HOH B 3 2003 2003 HOH HOH . 
U 6 HOH B 4 2004 2004 HOH HOH . 
U 6 HOH B 5 2005 2005 HOH HOH . 
U 6 HOH B 6 2006 2006 HOH HOH . 
U 6 HOH B 7 2007 2007 HOH HOH . 
U 6 HOH B 8 2008 2008 HOH HOH . 
U 6 HOH B 9 2009 2009 HOH HOH . 
U 6 HOH B 10 2010 2010 HOH HOH . 
U 6 HOH B 11 2011 2011 HOH HOH . 
U 6 HOH B 12 2012 2012 HOH HOH . 
U 6 HOH B 13 2013 2013 HOH HOH . 
U 6 HOH B 14 2014 2014 HOH HOH . 
U 6 HOH B 15 2015 2015 HOH HOH . 
U 6 HOH B 16 2016 2016 HOH HOH . 
U 6 HOH B 17 2017 2017 HOH HOH . 
U 6 HOH B 18 2018 2018 HOH HOH . 
U 6 HOH B 19 2019 2019 HOH HOH . 
U 6 HOH B 20 2020 2020 HOH HOH . 
U 6 HOH B 21 2021 2021 HOH HOH . 
U 6 HOH B 22 2022 2022 HOH HOH . 
U 6 HOH B 23 2023 2023 HOH HOH . 
U 6 HOH B 24 2024 2024 HOH HOH . 
U 6 HOH B 25 2025 2025 HOH HOH . 
U 6 HOH B 26 2026 2026 HOH HOH . 
U 6 HOH B 27 2027 2027 HOH HOH . 
U 6 HOH B 28 2028 2028 HOH HOH . 
U 6 HOH B 29 2029 2029 HOH HOH . 
U 6 HOH B 30 2030 2030 HOH HOH . 
U 6 HOH B 31 2031 2031 HOH HOH . 
U 6 HOH B 32 2032 2032 HOH HOH . 
U 6 HOH B 33 2033 2033 HOH HOH . 
U 6 HOH B 34 2034 2034 HOH HOH . 
U 6 HOH B 35 2035 2035 HOH HOH . 
U 6 HOH B 36 2036 2036 HOH HOH . 
U 6 HOH B 37 2037 2037 HOH HOH . 
U 6 HOH B 38 2038 2038 HOH HOH . 
U 6 HOH B 39 2039 2039 HOH HOH . 
U 6 HOH B 40 2040 2040 HOH HOH . 
U 6 HOH B 41 2041 2041 HOH HOH . 
U 6 HOH B 42 2042 2042 HOH HOH . 
U 6 HOH B 43 2043 2043 HOH HOH . 
U 6 HOH B 44 2044 2044 HOH HOH . 
U 6 HOH B 45 2045 2045 HOH HOH . 
U 6 HOH B 46 2046 2046 HOH HOH . 
U 6 HOH B 47 2047 2047 HOH HOH . 
U 6 HOH B 48 2048 2048 HOH HOH . 
U 6 HOH B 49 2049 2049 HOH HOH . 
U 6 HOH B 50 2050 2050 HOH HOH . 
U 6 HOH B 51 2051 2051 HOH HOH . 
U 6 HOH B 52 2052 2052 HOH HOH . 
U 6 HOH B 53 2053 2053 HOH HOH . 
U 6 HOH B 54 2054 2054 HOH HOH . 
U 6 HOH B 55 2055 2055 HOH HOH . 
U 6 HOH B 56 2056 2056 HOH HOH . 
U 6 HOH B 57 2057 2057 HOH HOH . 
U 6 HOH B 58 2058 2058 HOH HOH . 
U 6 HOH B 59 2059 2059 HOH HOH . 
U 6 HOH B 60 2060 2060 HOH HOH . 
U 6 HOH B 61 2061 2061 HOH HOH . 
U 6 HOH B 62 2062 2062 HOH HOH . 
U 6 HOH B 63 2063 2063 HOH HOH . 
U 6 HOH B 64 2064 2064 HOH HOH . 
U 6 HOH B 65 2065 2065 HOH HOH . 
U 6 HOH B 66 2066 2066 HOH HOH . 
U 6 HOH B 67 2067 2067 HOH HOH . 
U 6 HOH B 68 2068 2068 HOH HOH . 
U 6 HOH B 69 2069 2069 HOH HOH . 
U 6 HOH B 70 2070 2070 HOH HOH . 
U 6 HOH B 71 2071 2071 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 UJ6 . . . I 5 -8.693 5.299 -2.86 0.9 33.25 ? O1 UJ6 1216 A 1 
HETATM 2 C C2 UJ6 . . . I 5 -7.782 5.878 -2.282 0.9 29.22 ? C2 UJ6 1216 A 1 
HETATM 3 C C3 UJ6 . . . I 5 -7.961 7.088 -1.401 0.9 26.46 ? C3 UJ6 1216 A 1 
HETATM 4 C C4 UJ6 . . . I 5 -9.02 6.808 -0.363 0.9 24.31 ? C4 UJ6 1216 A 1 
HETATM 5 C C5 UJ6 . . . I 5 -9.362 8.024 0.447 0.9 21.54 ? C5 UJ6 1216 A 1 
HETATM 6 C C6 UJ6 . . . I 5 -8.944 7.983 1.767 0.9 19.81 ? C6 UJ6 1216 A 1 
HETATM 7 C C7 UJ6 . . . I 5 -9.185 9.024 2.641 0.9 19.19 ? C7 UJ6 1216 A 1 
HETATM 8 C C8 UJ6 . . . I 5 -9.865 10.109 2.156 0.9 19.33 ? C8 UJ6 1216 A 1 
HETATM 9 O O9 UJ6 . . . I 5 -10.195 11.228 2.868 0.9 18.29 ? O9 UJ6 1216 A 1 
HETATM 10 C C10 UJ6 . . . I 5 -10.637 12.066 1.804 0.9 19.45 ? C10 UJ6 1216 A 1 
HETATM 11 O O11 UJ6 . . . I 5 -10.94 11.338 0.608 0.9 19.88 ? O11 UJ6 1216 A 1 
HETATM 12 C C12 UJ6 . . . I 5 -10.286 10.157 0.863 0.9 19.24 ? C12 UJ6 1216 A 1 
HETATM 13 C C13 UJ6 . . . I 5 -10.056 9.135 -0.035 0.9 19.74 ? C13 UJ6 1216 A 1 
HETATM 14 C C14 UJ6 . . . I 5 -10.556 9.292 -1.432 0.9 20.49 ? C14 UJ6 1216 A 1 
HETATM 15 O O15 UJ6 . . . I 5 -10.495 10.446 -1.946 0.9 18.99 ? O15 UJ6 1216 A 1 
HETATM 16 O O16 UJ6 . . . I 5 -11.018 8.281 -2.023 0.9 20.06 ? O16 UJ6 1216 A 1 
HETATM 17 C C17 UJ6 . . . I 5 -6.571 7.305 -0.915 0.9 25.59 ? C17 UJ6 1216 A 1 
HETATM 18 C C18 UJ6 . . . I 5 -5.726 6.406 -1.494 0.9 25.91 ? C18 UJ6 1216 A 1 
HETATM 19 N N19 UJ6 . . . I 5 -6.437 5.556 -2.324 0.9 28.21 ? N19 UJ6 1216 A 1 
HETATM 20 C C20 UJ6 . . . I 5 -4.379 6.389 -1.249 0.9 23.84 ? C20 UJ6 1216 A 1 
HETATM 21 C C21 UJ6 . . . I 5 -3.879 7.332 -0.38 0.9 23.67 ? C21 UJ6 1216 A 1 
HETATM 22 C C22 UJ6 . . . I 5 -4.721 8.245 0.217 0.9 22.46 ? C22 UJ6 1216 A 1 
HETATM 23 C C23 UJ6 . . . I 5 -6.073 8.245 -0.046 0.9 24.4 ? C23 UJ6 1216 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#