data_4CGG # _model_server_result.job_id YhgqeGS0RLHQr8N4Pjh-1g _model_server_result.datetime_utc '2024-11-12 23:45:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cgg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1218}' # _entry.id 4CGG # _exptl.entry_id 4CGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.389 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-6-[(E)-[(2E)-2-hydroxyimino-3H-inden-1-ylidene]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CGG _cell.length_a 70.945 _cell.length_b 70.945 _cell.length_c 66.547 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N # _chem_comp.formula 'C22 H19 N O7' _chem_comp.formula_weight 409.389 _chem_comp.id K5Q _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-6-[(E)-[(2E)-2-hydroxyimino-3H-inden-1-ylidene]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 K5Q sing 182 n y C1 C3 K5Q doub 183 n y C2 C5 K5Q doub 184 n y C3 C7 K5Q sing 185 n y C4 C6 K5Q sing 186 n y C4 C8 K5Q doub 187 n y C5 C10 K5Q sing 188 n y C6 C11 K5Q doub 189 n y C7 C10 K5Q doub 190 n y C7 C13 K5Q sing 191 n n C8 C9 K5Q sing 192 n y C8 C15 K5Q sing 193 n n C9 C12 K5Q doub 194 n y C9 C16 K5Q sing 195 n n C10 C18 K5Q sing 196 n n C11 C12 K5Q sing 197 n y C11 O29 K5Q sing 198 n n C12 O28 K5Q sing 199 n n C13 C14 K5Q sing 200 n n C13 C15 K5Q doub 201 e n C14 C18 K5Q sing 202 n n C14 N23 K5Q doub 203 e n C16 O24 K5Q sing 204 n n C16 O26 K5Q doub 205 n n C17 C21 K5Q sing 206 n n C17 O25 K5Q doub 207 n n C17 O27 K5Q sing 208 n n C19 C20 K5Q sing 209 n n C19 O28 K5Q sing 210 n n C20 C22 K5Q sing 211 n n C20 O29 K5Q sing 212 n n C21 C22 K5Q sing 213 n n N23 O30 K5Q sing 214 n n C1 H1 K5Q sing 215 n n C2 H2 K5Q sing 216 n n C3 H3 K5Q sing 217 n n C5 H5 K5Q sing 218 n n C4 H4 K5Q sing 219 n n C6 H6 K5Q sing 220 n n C15 H15 K5Q sing 221 n n C18 H181 K5Q sing 222 n n C18 H182 K5Q sing 223 n n O24 H24 K5Q sing 224 n n C21 H211 K5Q sing 225 n n C21 H212 K5Q sing 226 n n O27 H27 K5Q sing 227 n n C19 H191 K5Q sing 228 n n C19 H192 K5Q sing 229 n n C20 H20 K5Q sing 230 n n C22 H221 K5Q sing 231 n n C22 H222 K5Q sing 232 n n O30 H30 K5Q sing 233 n n # _atom_sites.entry_id 4CGG _atom_sites.fract_transf_matrix[1][1] 0.014095 _atom_sites.fract_transf_matrix[1][2] 0.008138 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 2 SO4 A 1 1213 1213 SO4 SO4 . G 2 SO4 B 1 1210 1210 SO4 SO4 . H 2 SO4 B 1 1211 1211 SO4 SO4 . I 2 SO4 B 1 1212 1212 SO4 SO4 . J 2 SO4 B 1 1213 1213 SO4 SO4 . K 3 CL B 1 1214 1214 CL CL . L 4 EDO B 1 1215 1215 EDO EDO . M 4 EDO B 1 1216 1216 EDO EDO . N 5 K5Q B 1 1217 1217 K5Q K5Q . O 5 K5Q B 1 1218 1218 K5Q K5Q . P 6 HOH A 1 2001 2001 HOH HOH . P 6 HOH A 2 2002 2002 HOH HOH . P 6 HOH A 3 2003 2003 HOH HOH . P 6 HOH A 4 2004 2004 HOH HOH . P 6 HOH A 5 2005 2005 HOH HOH . P 6 HOH A 6 2006 2006 HOH HOH . P 6 HOH A 7 2007 2007 HOH HOH . P 6 HOH A 8 2008 2008 HOH HOH . P 6 HOH A 9 2009 2009 HOH HOH . P 6 HOH A 10 2010 2010 HOH HOH . P 6 HOH A 11 2011 2011 HOH HOH . P 6 HOH A 12 2012 2012 HOH HOH . P 6 HOH A 13 2013 2013 HOH HOH . P 6 HOH A 14 2014 2014 HOH HOH . P 6 HOH A 15 2015 2015 HOH HOH . P 6 HOH A 16 2016 2016 HOH HOH . P 6 HOH A 17 2017 2017 HOH HOH . P 6 HOH A 18 2018 2018 HOH HOH . P 6 HOH A 19 2019 2019 HOH HOH . P 6 HOH A 20 2020 2020 HOH HOH . P 6 HOH A 21 2021 2021 HOH HOH . P 6 HOH A 22 2022 2022 HOH HOH . P 6 HOH A 23 2023 2023 HOH HOH . P 6 HOH A 24 2024 2024 HOH HOH . P 6 HOH A 25 2025 2025 HOH HOH . P 6 HOH A 26 2026 2026 HOH HOH . P 6 HOH A 27 2027 2027 HOH HOH . P 6 HOH A 28 2028 2028 HOH HOH . P 6 HOH A 29 2029 2029 HOH HOH . P 6 HOH A 30 2030 2030 HOH HOH . P 6 HOH A 31 2031 2031 HOH HOH . P 6 HOH A 32 2032 2032 HOH HOH . P 6 HOH A 33 2033 2033 HOH HOH . P 6 HOH A 34 2034 2034 HOH HOH . P 6 HOH A 35 2035 2035 HOH HOH . P 6 HOH A 36 2036 2036 HOH HOH . P 6 HOH A 37 2037 2037 HOH HOH . P 6 HOH A 38 2038 2038 HOH HOH . P 6 HOH A 39 2039 2039 HOH HOH . P 6 HOH A 40 2040 2040 HOH HOH . P 6 HOH A 41 2041 2041 HOH HOH . P 6 HOH A 42 2042 2042 HOH HOH . P 6 HOH A 43 2043 2043 HOH HOH . P 6 HOH A 44 2044 2044 HOH HOH . P 6 HOH A 45 2045 2045 HOH HOH . P 6 HOH A 46 2046 2046 HOH HOH . P 6 HOH A 47 2047 2047 HOH HOH . P 6 HOH A 48 2048 2048 HOH HOH . P 6 HOH A 49 2049 2049 HOH HOH . P 6 HOH A 50 2050 2050 HOH HOH . P 6 HOH A 51 2051 2051 HOH HOH . P 6 HOH A 52 2052 2052 HOH HOH . P 6 HOH A 53 2053 2053 HOH HOH . P 6 HOH A 54 2054 2054 HOH HOH . P 6 HOH A 55 2055 2055 HOH HOH . P 6 HOH A 56 2056 2056 HOH HOH . P 6 HOH A 57 2057 2057 HOH HOH . P 6 HOH A 58 2058 2058 HOH HOH . P 6 HOH A 59 2059 2059 HOH HOH . P 6 HOH A 60 2060 2060 HOH HOH . P 6 HOH A 61 2061 2061 HOH HOH . P 6 HOH A 62 2062 2062 HOH HOH . P 6 HOH A 63 2063 2063 HOH HOH . P 6 HOH A 64 2064 2064 HOH HOH . Q 6 HOH B 1 2001 2001 HOH HOH . Q 6 HOH B 2 2002 2002 HOH HOH . Q 6 HOH B 3 2003 2003 HOH HOH . Q 6 HOH B 4 2004 2004 HOH HOH . Q 6 HOH B 5 2005 2005 HOH HOH . Q 6 HOH B 6 2006 2006 HOH HOH . Q 6 HOH B 7 2007 2007 HOH HOH . Q 6 HOH B 8 2008 2008 HOH HOH . Q 6 HOH B 9 2009 2009 HOH HOH . Q 6 HOH B 10 2010 2010 HOH HOH . Q 6 HOH B 11 2011 2011 HOH HOH . Q 6 HOH B 12 2012 2012 HOH HOH . Q 6 HOH B 13 2013 2013 HOH HOH . Q 6 HOH B 14 2014 2014 HOH HOH . Q 6 HOH B 15 2015 2015 HOH HOH . Q 6 HOH B 16 2016 2016 HOH HOH . Q 6 HOH B 17 2017 2017 HOH HOH . Q 6 HOH B 18 2018 2018 HOH HOH . Q 6 HOH B 19 2019 2019 HOH HOH . Q 6 HOH B 20 2020 2020 HOH HOH . Q 6 HOH B 21 2021 2021 HOH HOH . Q 6 HOH B 22 2022 2022 HOH HOH . Q 6 HOH B 23 2023 2023 HOH HOH . Q 6 HOH B 24 2024 2024 HOH HOH . Q 6 HOH B 25 2025 2025 HOH HOH . Q 6 HOH B 26 2026 2026 HOH HOH . Q 6 HOH B 27 2027 2027 HOH HOH . Q 6 HOH B 28 2028 2028 HOH HOH . Q 6 HOH B 29 2029 2029 HOH HOH . Q 6 HOH B 30 2030 2030 HOH HOH . Q 6 HOH B 31 2031 2031 HOH HOH . Q 6 HOH B 32 2032 2032 HOH HOH . Q 6 HOH B 33 2033 2033 HOH HOH . Q 6 HOH B 34 2034 2034 HOH HOH . Q 6 HOH B 35 2035 2035 HOH HOH . Q 6 HOH B 36 2036 2036 HOH HOH . Q 6 HOH B 37 2037 2037 HOH HOH . Q 6 HOH B 38 2038 2038 HOH HOH . Q 6 HOH B 39 2039 2039 HOH HOH . Q 6 HOH B 40 2040 2040 HOH HOH . Q 6 HOH B 41 2041 2041 HOH HOH . Q 6 HOH B 42 2042 2042 HOH HOH . Q 6 HOH B 43 2043 2043 HOH HOH . Q 6 HOH B 44 2044 2044 HOH HOH . Q 6 HOH B 45 2045 2045 HOH HOH . Q 6 HOH B 46 2046 2046 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K5Q . . . O 5 9.406 0.306 0.255 0.8 39.05 ? C1 K5Q 1218 B 1 HETATM 2 C C2 K5Q . . . O 5 8.282 0.046 -0.5 0.8 38.78 ? C2 K5Q 1218 B 1 HETATM 3 C C3 K5Q . . . O 5 10.046 1.523 0.176 0.8 40.15 ? C3 K5Q 1218 B 1 HETATM 4 C C4 K5Q . . . O 5 11.523 3.905 1.616 0.8 35.29 ? C4 K5Q 1218 B 1 HETATM 5 C C5 K5Q . . . O 5 7.771 0.999 -1.351 0.8 39.3 ? C5 K5Q 1218 B 1 HETATM 6 C C6 K5Q . . . O 5 12.427 3.597 2.597 0.8 32.77 ? C6 K5Q 1218 B 1 HETATM 7 C C7 K5Q . . . O 5 9.529 2.468 -0.679 0.8 39.84 ? C7 K5Q 1218 B 1 HETATM 8 C C8 K5Q . . . O 5 11.962 4.284 0.369 0.8 36.09 ? C8 K5Q 1218 B 1 HETATM 9 C C9 K5Q . . . O 5 13.31 4.388 0.082 0.8 34.51 ? C9 K5Q 1218 B 1 HETATM 10 C C10 K5Q . . . O 5 8.409 2.209 -1.428 0.8 41.17 ? C10 K5Q 1218 B 1 HETATM 11 C C11 K5Q . . . O 5 13.768 3.689 2.32 0.8 34.78 ? C11 K5Q 1218 B 1 HETATM 12 C C12 K5Q . . . O 5 14.222 4.079 1.071 0.8 34.99 ? C12 K5Q 1218 B 1 HETATM 13 C C13 K5Q . . . O 5 9.941 3.817 -0.991 0.8 40.51 ? C13 K5Q 1218 B 1 HETATM 14 C C14 K5Q . . . O 5 8.988 4.397 -1.934 0.8 42.01 ? C14 K5Q 1218 B 1 HETATM 15 C C15 K5Q . . . O 5 10.941 4.609 -0.598 0.8 38.14 ? C15 K5Q 1218 B 1 HETATM 16 C C16 K5Q . . . O 5 13.764 4.806 -1.263 0.8 33.68 ? C16 K5Q 1218 B 1 HETATM 17 C C17 K5Q . . . O 5 18.222 2.828 5.406 0.8 47.48 ? C17 K5Q 1218 B 1 HETATM 18 C C18 K5Q . . . O 5 7.989 3.344 -2.296 0.8 41.77 ? C18 K5Q 1218 B 1 HETATM 19 C C19 K5Q . . . O 5 16.337 3.599 1.813 0.8 38.12 ? C19 K5Q 1218 B 1 HETATM 20 C C20 K5Q . . . O 5 15.755 4.185 3.068 0.8 39.38 ? C20 K5Q 1218 B 1 HETATM 21 C C21 K5Q . . . O 5 16.866 2.778 4.74 0.8 44.36 ? C21 K5Q 1218 B 1 HETATM 22 C C22 K5Q . . . O 5 16.695 4.187 4.238 0.8 42.55 ? C22 K5Q 1218 B 1 HETATM 23 N N23 K5Q . . . O 5 8.966 5.625 -2.335 0.8 42.85 ? N23 K5Q 1218 B 1 HETATM 24 O O24 K5Q . . . O 5 14.659 4.099 -1.801 0.8 30.8 ? O24 K5Q 1218 B 1 HETATM 25 O O25 K5Q . . . O 5 18.705 1.679 5.586 0.8 48.91 ? O25 K5Q 1218 B 1 HETATM 26 O O26 K5Q . . . O 5 13.22 5.823 -1.771 0.8 34.25 ? O26 K5Q 1218 B 1 HETATM 27 O O27 K5Q . . . O 5 18.7 3.965 5.691 0.8 50.52 ? O27 K5Q 1218 B 1 HETATM 28 O O28 K5Q . . . O 5 15.579 4.184 0.762 0.8 36.77 ? O28 K5Q 1218 B 1 HETATM 29 O O29 K5Q . . . O 5 14.629 3.377 3.347 0.8 36.32 ? O29 K5Q 1218 B 1 HETATM 30 O O30 K5Q . . . O 5 7.885 5.787 -3.2 0.8 48.07 ? O30 K5Q 1218 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 30 #