data_4CGH
#
_model_server_result.job_id            -BfhSrPy_Fqf_UfdNJZN8g 
_model_server_result.datetime_utc      '2024-11-22 04:48:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cgh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1213}' 
#
_entry.id    4CGH 
#
_exptl.entry_id    4CGH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              396.436 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[[(1S,2R)-2-(4-azanylbutanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CGH 
_cell.length_a            71.5 
_cell.length_b            71.5 
_cell.length_c            66.81 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CGH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 M N N 
#
_chem_comp.formula           'C22 H24 N2 O5' 
_chem_comp.formula_weight    396.436 
_chem_comp.id                LOZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[[(1S,2R)-2-(4-azanylbutanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C29 LOZ sing 201 n y 
C27 C25 LOZ doub 202 n y 
C29 C31 LOZ doub 203 n y 
C25 C24 LOZ sing 204 n y 
C31 C23 LOZ sing 205 n y 
C7 C9 LOZ sing 206 n y 
C7 C6 LOZ doub 207 n y 
C9 C11 LOZ doub 208 n y 
C5 C6 LOZ sing 209 n y 
C5 C17 LOZ doub 210 n y 
C5 C2 LOZ sing 211 n n 
C24 C23 LOZ doub 212 n y 
C24 C33 LOZ sing 213 n n 
C23 C21 LOZ sing 214 n n 
C6 C18 LOZ sing 215 n n 
C11 C17 LOZ sing 216 n y 
C11 O12 LOZ sing 217 n n 
C17 O16 LOZ sing 218 n n 
C2 O3 LOZ sing 219 n n 
C2 O1 LOZ doub 220 n n 
C40 C42 LOZ sing 221 n n 
C40 N38 LOZ sing 222 n n 
C40 O41 LOZ doub 223 n n 
C33 C36 LOZ sing 224 n n 
C13 O12 LOZ sing 225 n n 
C13 O16 LOZ sing 226 n n 
C21 C36 LOZ sing 227 n n 
C21 C18 LOZ sing 228 n n 
C36 N38 LOZ sing 229 n n 
C42 C45 LOZ sing 230 n n 
C45 C48 LOZ sing 231 n n 
C48 N51 LOZ sing 232 n n 
C27 H27 LOZ sing 233 n n 
C29 H29 LOZ sing 234 n n 
C25 H25 LOZ sing 235 n n 
C31 H31 LOZ sing 236 n n 
C7 H7 LOZ sing 237 n n 
C9 H9 LOZ sing 238 n n 
C33 H331 LOZ sing 239 n n 
C33 H332 LOZ sing 240 n n 
C21 H21 LOZ sing 241 n n 
C18 H181 LOZ sing 242 n n 
C18 H182 LOZ sing 243 n n 
O3 H3 LOZ sing 244 n n 
C42 H421 LOZ sing 245 n n 
C42 H422 LOZ sing 246 n n 
N38 H38 LOZ sing 247 n n 
C36 H36 LOZ sing 248 n n 
C13 H131 LOZ sing 249 n n 
C13 H132 LOZ sing 250 n n 
C45 H451 LOZ sing 251 n n 
C45 H452 LOZ sing 252 n n 
C48 H481 LOZ sing 253 n n 
C48 H482 LOZ sing 254 n n 
N51 H511 LOZ sing 255 n n 
N51 H512 LOZ sing 256 n n 
#
_atom_sites.entry_id                     4CGH 
_atom_sites.fract_transf_matrix[1][1]    0.013986 
_atom_sites.fract_transf_matrix[1][2]    0.008075 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01615 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1210 1210 SO4 SO4 . 
D 2 SO4 A 1 1211 1211 SO4 SO4 . 
E 2 SO4 A 1 1212 1212 SO4 SO4 . 
F 2 SO4 A 1 1213 1213 SO4 SO4 . 
G 3 ACY A 1 1214 1214 ACY ACY . 
H 3 ACY A 1 1215 1215 ACY ACY . 
I 4 LOZ A 1 1216 1216 LOZ LOZ . 
J 2 SO4 B 1 1210 1210 SO4 SO4 . 
K 2 SO4 B 1 1211 1211 SO4 SO4 . 
L 2 SO4 B 1 1212 1212 SO4 SO4 . 
M 4 LOZ B 1 1213 1213 LOZ LOZ . 
N 5 HOH A 1 2001 2001 HOH HOH . 
N 5 HOH A 2 2002 2002 HOH HOH . 
N 5 HOH A 3 2003 2003 HOH HOH . 
N 5 HOH A 4 2004 2004 HOH HOH . 
N 5 HOH A 5 2005 2005 HOH HOH . 
N 5 HOH A 6 2006 2006 HOH HOH . 
N 5 HOH A 7 2007 2007 HOH HOH . 
N 5 HOH A 8 2008 2008 HOH HOH . 
N 5 HOH A 9 2009 2009 HOH HOH . 
N 5 HOH A 10 2010 2010 HOH HOH . 
N 5 HOH A 11 2011 2011 HOH HOH . 
N 5 HOH A 12 2012 2012 HOH HOH . 
N 5 HOH A 13 2013 2013 HOH HOH . 
N 5 HOH A 14 2014 2014 HOH HOH . 
N 5 HOH A 15 2015 2015 HOH HOH . 
N 5 HOH A 16 2016 2016 HOH HOH . 
N 5 HOH A 17 2017 2017 HOH HOH . 
N 5 HOH A 18 2018 2018 HOH HOH . 
N 5 HOH A 19 2019 2019 HOH HOH . 
N 5 HOH A 20 2020 2020 HOH HOH . 
N 5 HOH A 21 2021 2021 HOH HOH . 
N 5 HOH A 22 2022 2022 HOH HOH . 
N 5 HOH A 23 2023 2023 HOH HOH . 
N 5 HOH A 24 2024 2024 HOH HOH . 
N 5 HOH A 25 2025 2025 HOH HOH . 
N 5 HOH A 26 2026 2026 HOH HOH . 
N 5 HOH A 27 2027 2027 HOH HOH . 
N 5 HOH A 28 2028 2028 HOH HOH . 
N 5 HOH A 29 2029 2029 HOH HOH . 
N 5 HOH A 30 2030 2030 HOH HOH . 
N 5 HOH A 31 2031 2031 HOH HOH . 
N 5 HOH A 32 2032 2032 HOH HOH . 
N 5 HOH A 33 2033 2033 HOH HOH . 
N 5 HOH A 34 2034 2034 HOH HOH . 
N 5 HOH A 35 2035 2035 HOH HOH . 
N 5 HOH A 36 2036 2036 HOH HOH . 
N 5 HOH A 37 2037 2037 HOH HOH . 
N 5 HOH A 38 2038 2038 HOH HOH . 
N 5 HOH A 39 2039 2039 HOH HOH . 
N 5 HOH A 40 2040 2040 HOH HOH . 
N 5 HOH A 41 2041 2041 HOH HOH . 
N 5 HOH A 42 2042 2042 HOH HOH . 
N 5 HOH A 43 2043 2043 HOH HOH . 
N 5 HOH A 44 2044 2044 HOH HOH . 
N 5 HOH A 45 2045 2045 HOH HOH . 
N 5 HOH A 46 2046 2046 HOH HOH . 
N 5 HOH A 47 2047 2047 HOH HOH . 
N 5 HOH A 48 2048 2048 HOH HOH . 
N 5 HOH A 49 2049 2049 HOH HOH . 
N 5 HOH A 50 2050 2050 HOH HOH . 
N 5 HOH A 51 2051 2051 HOH HOH . 
N 5 HOH A 52 2052 2052 HOH HOH . 
N 5 HOH A 53 2053 2053 HOH HOH . 
N 5 HOH A 54 2054 2054 HOH HOH . 
N 5 HOH A 55 2055 2055 HOH HOH . 
N 5 HOH A 56 2056 2056 HOH HOH . 
N 5 HOH A 57 2057 2057 HOH HOH . 
N 5 HOH A 58 2058 2058 HOH HOH . 
N 5 HOH A 59 2059 2059 HOH HOH . 
N 5 HOH A 60 2060 2060 HOH HOH . 
N 5 HOH A 61 2061 2061 HOH HOH . 
N 5 HOH A 62 2062 2062 HOH HOH . 
N 5 HOH A 63 2063 2063 HOH HOH . 
N 5 HOH A 64 2064 2064 HOH HOH . 
N 5 HOH A 65 2065 2065 HOH HOH . 
O 5 HOH B 1 2001 2001 HOH HOH . 
O 5 HOH B 2 2002 2002 HOH HOH . 
O 5 HOH B 3 2003 2003 HOH HOH . 
O 5 HOH B 4 2004 2004 HOH HOH . 
O 5 HOH B 5 2005 2005 HOH HOH . 
O 5 HOH B 6 2006 2006 HOH HOH . 
O 5 HOH B 7 2007 2007 HOH HOH . 
O 5 HOH B 8 2008 2008 HOH HOH . 
O 5 HOH B 9 2009 2009 HOH HOH . 
O 5 HOH B 10 2010 2010 HOH HOH . 
O 5 HOH B 11 2011 2011 HOH HOH . 
O 5 HOH B 12 2012 2012 HOH HOH . 
O 5 HOH B 13 2013 2013 HOH HOH . 
O 5 HOH B 14 2014 2014 HOH HOH . 
O 5 HOH B 15 2015 2015 HOH HOH . 
O 5 HOH B 16 2016 2016 HOH HOH . 
O 5 HOH B 17 2017 2017 HOH HOH . 
O 5 HOH B 18 2018 2018 HOH HOH . 
O 5 HOH B 19 2019 2019 HOH HOH . 
O 5 HOH B 20 2020 2020 HOH HOH . 
O 5 HOH B 21 2021 2021 HOH HOH . 
O 5 HOH B 22 2022 2022 HOH HOH . 
O 5 HOH B 23 2023 2023 HOH HOH . 
O 5 HOH B 24 2024 2024 HOH HOH . 
O 5 HOH B 25 2025 2025 HOH HOH . 
O 5 HOH B 26 2026 2026 HOH HOH . 
O 5 HOH B 27 2027 2027 HOH HOH . 
O 5 HOH B 28 2028 2028 HOH HOH . 
O 5 HOH B 29 2029 2029 HOH HOH . 
O 5 HOH B 30 2030 2030 HOH HOH . 
O 5 HOH B 31 2031 2031 HOH HOH . 
O 5 HOH B 32 2032 2032 HOH HOH . 
O 5 HOH B 33 2033 2033 HOH HOH . 
O 5 HOH B 34 2034 2034 HOH HOH . 
O 5 HOH B 35 2035 2035 HOH HOH . 
O 5 HOH B 36 2036 2036 HOH HOH . 
O 5 HOH B 37 2037 2037 HOH HOH . 
O 5 HOH B 38 2038 2038 HOH HOH . 
O 5 HOH B 39 2039 2039 HOH HOH . 
O 5 HOH B 40 2040 2040 HOH HOH . 
O 5 HOH B 41 2041 2041 HOH HOH . 
O 5 HOH B 42 2042 2042 HOH HOH . 
O 5 HOH B 43 2043 2043 HOH HOH . 
O 5 HOH B 44 2044 2044 HOH HOH . 
O 5 HOH B 45 2045 2045 HOH HOH . 
O 5 HOH B 46 2046 2046 HOH HOH . 
O 5 HOH B 47 2047 2047 HOH HOH . 
O 5 HOH B 48 2048 2048 HOH HOH . 
O 5 HOH B 49 2049 2049 HOH HOH . 
O 5 HOH B 50 2050 2050 HOH HOH . 
O 5 HOH B 51 2051 2051 HOH HOH . 
O 5 HOH B 52 2052 2052 HOH HOH . 
O 5 HOH B 53 2053 2053 HOH HOH . 
O 5 HOH B 54 2054 2054 HOH HOH . 
O 5 HOH B 55 2055 2055 HOH HOH . 
O 5 HOH B 56 2056 2056 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 LOZ . . . M 4 75.264 33.769 -15.483 1 30.7 ? C27 LOZ 1213 B 1 
HETATM 2 C C29 LOZ . . . M 4 76.185 33.006 -14.8 1 30 ? C29 LOZ 1213 B 1 
HETATM 3 C C25 LOZ . . . M 4 75.69 34.663 -16.436 1 32.36 ? C25 LOZ 1213 B 1 
HETATM 4 C C31 LOZ . . . M 4 77.535 33.117 -15.056 1 31.5 ? C31 LOZ 1213 B 1 
HETATM 5 C C7 LOZ . . . M 4 80.465 33.265 -13.385 1 25.35 ? C7 LOZ 1213 B 1 
HETATM 6 C C9 LOZ . . . M 4 80.751 32.211 -12.549 1 24.4 ? C9 LOZ 1213 B 1 
HETATM 7 C C5 LOZ . . . M 4 81.521 32.157 -15.25 1 25.99 ? C5 LOZ 1213 B 1 
HETATM 8 C C24 LOZ . . . M 4 77.034 34.761 -16.682 1 32.3 ? C24 LOZ 1213 B 1 
HETATM 9 C C23 LOZ . . . M 4 77.957 34.014 -16.008 1 32.34 ? C23 LOZ 1213 B 1 
HETATM 10 C C6 LOZ . . . M 4 80.833 33.254 -14.718 1 27 ? C6 LOZ 1213 B 1 
HETATM 11 C C11 LOZ . . . M 4 81.419 31.143 -13.08 1 24.41 ? C11 LOZ 1213 B 1 
HETATM 12 C C17 LOZ . . . M 4 81.793 31.114 -14.388 1 24.85 ? C17 LOZ 1213 B 1 
HETATM 13 C C2 LOZ . . . M 4 81.975 32.026 -16.662 1 25.4 ? C2 LOZ 1213 B 1 
HETATM 14 C C40 LOZ . . . M 4 80.872 37.206 -17.343 1 45.79 ? C40 LOZ 1213 B 1 
HETATM 15 C C33 LOZ . . . M 4 77.63 35.672 -17.668 1 33.53 ? C33 LOZ 1213 B 1 
HETATM 16 C C13 LOZ . . . M 4 82.195 29.199 -13.487 1 26.45 ? C13 LOZ 1213 B 1 
HETATM 17 C C21 LOZ . . . M 4 79.345 34.293 -16.483 1 32.99 ? C21 LOZ 1213 B 1 
HETATM 18 C C36 LOZ . . . M 4 79.107 35.505 -17.395 1 36.56 ? C36 LOZ 1213 B 1 
HETATM 19 C C18 LOZ . . . M 4 80.433 34.506 -15.446 1 30.81 ? C18 LOZ 1213 B 1 
HETATM 20 C C42 LOZ . . . M 4 81.541 36.305 -18.345 1 48.08 ? C42 LOZ 1213 B 1 
HETATM 21 C C45 LOZ . . . M 4 82.1 37.084 -19.513 1 50.12 ? C45 LOZ 1213 B 1 
HETATM 22 C C48 LOZ . . . M 4 83.463 36.523 -19.816 1 51.39 ? C48 LOZ 1213 B 1 
HETATM 23 N N38 LOZ . . . M 4 79.667 36.73 -16.876 1 41.74 ? N38 LOZ 1213 B 1 
HETATM 24 N N51 LOZ . . . M 4 83.537 36.093 -21.23 1 52.46 ? N51 LOZ 1213 B 1 
HETATM 25 O O3 LOZ . . . M 4 81.964 30.872 -17.189 1 24.94 ? O3 LOZ 1213 B 1 
HETATM 26 O O1 LOZ . . . M 4 82.359 33.073 -17.249 1 25.76 ? O1 LOZ 1213 B 1 
HETATM 27 O O41 LOZ . . . M 4 81.387 38.246 -16.961 1 52.82 ? O41 LOZ 1213 B 1 
HETATM 28 O O12 LOZ . . . M 4 81.773 30.02 -12.395 1 24.36 ? O12 LOZ 1213 B 1 
HETATM 29 O O16 LOZ . . . M 4 82.447 29.94 -14.689 1 27.18 ? O16 LOZ 1213 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           29 
#