data_4CGH # _model_server_result.job_id x-INhVLLgjaaLZipBSMTYg _model_server_result.datetime_utc '2024-11-22 04:46:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1216}' # _entry.id 4CGH # _exptl.entry_id 4CGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.436 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[(1S,2R)-2-(4-azanylbutanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CGH _cell.length_a 71.5 _cell.length_b 71.5 _cell.length_c 66.81 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 M N N # _chem_comp.formula 'C22 H24 N2 O5' _chem_comp.formula_weight 396.436 _chem_comp.id LOZ _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[(1S,2R)-2-(4-azanylbutanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C29 LOZ sing 201 n y C27 C25 LOZ doub 202 n y C29 C31 LOZ doub 203 n y C25 C24 LOZ sing 204 n y C31 C23 LOZ sing 205 n y C7 C9 LOZ sing 206 n y C7 C6 LOZ doub 207 n y C9 C11 LOZ doub 208 n y C5 C6 LOZ sing 209 n y C5 C17 LOZ doub 210 n y C5 C2 LOZ sing 211 n n C24 C23 LOZ doub 212 n y C24 C33 LOZ sing 213 n n C23 C21 LOZ sing 214 n n C6 C18 LOZ sing 215 n n C11 C17 LOZ sing 216 n y C11 O12 LOZ sing 217 n n C17 O16 LOZ sing 218 n n C2 O3 LOZ sing 219 n n C2 O1 LOZ doub 220 n n C40 C42 LOZ sing 221 n n C40 N38 LOZ sing 222 n n C40 O41 LOZ doub 223 n n C33 C36 LOZ sing 224 n n C13 O12 LOZ sing 225 n n C13 O16 LOZ sing 226 n n C21 C36 LOZ sing 227 n n C21 C18 LOZ sing 228 n n C36 N38 LOZ sing 229 n n C42 C45 LOZ sing 230 n n C45 C48 LOZ sing 231 n n C48 N51 LOZ sing 232 n n C27 H27 LOZ sing 233 n n C29 H29 LOZ sing 234 n n C25 H25 LOZ sing 235 n n C31 H31 LOZ sing 236 n n C7 H7 LOZ sing 237 n n C9 H9 LOZ sing 238 n n C33 H331 LOZ sing 239 n n C33 H332 LOZ sing 240 n n C21 H21 LOZ sing 241 n n C18 H181 LOZ sing 242 n n C18 H182 LOZ sing 243 n n O3 H3 LOZ sing 244 n n C42 H421 LOZ sing 245 n n C42 H422 LOZ sing 246 n n N38 H38 LOZ sing 247 n n C36 H36 LOZ sing 248 n n C13 H131 LOZ sing 249 n n C13 H132 LOZ sing 250 n n C45 H451 LOZ sing 251 n n C45 H452 LOZ sing 252 n n C48 H481 LOZ sing 253 n n C48 H482 LOZ sing 254 n n N51 H511 LOZ sing 255 n n N51 H512 LOZ sing 256 n n # _atom_sites.entry_id 4CGH _atom_sites.fract_transf_matrix[1][1] 0.013986 _atom_sites.fract_transf_matrix[1][2] 0.008075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 2 SO4 A 1 1213 1213 SO4 SO4 . G 3 ACY A 1 1214 1214 ACY ACY . H 3 ACY A 1 1215 1215 ACY ACY . I 4 LOZ A 1 1216 1216 LOZ LOZ . J 2 SO4 B 1 1210 1210 SO4 SO4 . K 2 SO4 B 1 1211 1211 SO4 SO4 . L 2 SO4 B 1 1212 1212 SO4 SO4 . M 4 LOZ B 1 1213 1213 LOZ LOZ . N 5 HOH A 1 2001 2001 HOH HOH . N 5 HOH A 2 2002 2002 HOH HOH . N 5 HOH A 3 2003 2003 HOH HOH . N 5 HOH A 4 2004 2004 HOH HOH . N 5 HOH A 5 2005 2005 HOH HOH . N 5 HOH A 6 2006 2006 HOH HOH . N 5 HOH A 7 2007 2007 HOH HOH . N 5 HOH A 8 2008 2008 HOH HOH . N 5 HOH A 9 2009 2009 HOH HOH . N 5 HOH A 10 2010 2010 HOH HOH . N 5 HOH A 11 2011 2011 HOH HOH . N 5 HOH A 12 2012 2012 HOH HOH . N 5 HOH A 13 2013 2013 HOH HOH . N 5 HOH A 14 2014 2014 HOH HOH . N 5 HOH A 15 2015 2015 HOH HOH . N 5 HOH A 16 2016 2016 HOH HOH . N 5 HOH A 17 2017 2017 HOH HOH . N 5 HOH A 18 2018 2018 HOH HOH . N 5 HOH A 19 2019 2019 HOH HOH . N 5 HOH A 20 2020 2020 HOH HOH . N 5 HOH A 21 2021 2021 HOH HOH . N 5 HOH A 22 2022 2022 HOH HOH . N 5 HOH A 23 2023 2023 HOH HOH . N 5 HOH A 24 2024 2024 HOH HOH . N 5 HOH A 25 2025 2025 HOH HOH . N 5 HOH A 26 2026 2026 HOH HOH . N 5 HOH A 27 2027 2027 HOH HOH . N 5 HOH A 28 2028 2028 HOH HOH . N 5 HOH A 29 2029 2029 HOH HOH . N 5 HOH A 30 2030 2030 HOH HOH . N 5 HOH A 31 2031 2031 HOH HOH . N 5 HOH A 32 2032 2032 HOH HOH . N 5 HOH A 33 2033 2033 HOH HOH . N 5 HOH A 34 2034 2034 HOH HOH . N 5 HOH A 35 2035 2035 HOH HOH . N 5 HOH A 36 2036 2036 HOH HOH . N 5 HOH A 37 2037 2037 HOH HOH . N 5 HOH A 38 2038 2038 HOH HOH . N 5 HOH A 39 2039 2039 HOH HOH . N 5 HOH A 40 2040 2040 HOH HOH . N 5 HOH A 41 2041 2041 HOH HOH . N 5 HOH A 42 2042 2042 HOH HOH . N 5 HOH A 43 2043 2043 HOH HOH . N 5 HOH A 44 2044 2044 HOH HOH . N 5 HOH A 45 2045 2045 HOH HOH . N 5 HOH A 46 2046 2046 HOH HOH . N 5 HOH A 47 2047 2047 HOH HOH . N 5 HOH A 48 2048 2048 HOH HOH . N 5 HOH A 49 2049 2049 HOH HOH . N 5 HOH A 50 2050 2050 HOH HOH . N 5 HOH A 51 2051 2051 HOH HOH . N 5 HOH A 52 2052 2052 HOH HOH . N 5 HOH A 53 2053 2053 HOH HOH . N 5 HOH A 54 2054 2054 HOH HOH . N 5 HOH A 55 2055 2055 HOH HOH . N 5 HOH A 56 2056 2056 HOH HOH . N 5 HOH A 57 2057 2057 HOH HOH . N 5 HOH A 58 2058 2058 HOH HOH . N 5 HOH A 59 2059 2059 HOH HOH . N 5 HOH A 60 2060 2060 HOH HOH . N 5 HOH A 61 2061 2061 HOH HOH . N 5 HOH A 62 2062 2062 HOH HOH . N 5 HOH A 63 2063 2063 HOH HOH . N 5 HOH A 64 2064 2064 HOH HOH . N 5 HOH A 65 2065 2065 HOH HOH . O 5 HOH B 1 2001 2001 HOH HOH . O 5 HOH B 2 2002 2002 HOH HOH . O 5 HOH B 3 2003 2003 HOH HOH . O 5 HOH B 4 2004 2004 HOH HOH . O 5 HOH B 5 2005 2005 HOH HOH . O 5 HOH B 6 2006 2006 HOH HOH . O 5 HOH B 7 2007 2007 HOH HOH . O 5 HOH B 8 2008 2008 HOH HOH . O 5 HOH B 9 2009 2009 HOH HOH . O 5 HOH B 10 2010 2010 HOH HOH . O 5 HOH B 11 2011 2011 HOH HOH . O 5 HOH B 12 2012 2012 HOH HOH . O 5 HOH B 13 2013 2013 HOH HOH . O 5 HOH B 14 2014 2014 HOH HOH . O 5 HOH B 15 2015 2015 HOH HOH . O 5 HOH B 16 2016 2016 HOH HOH . O 5 HOH B 17 2017 2017 HOH HOH . O 5 HOH B 18 2018 2018 HOH HOH . O 5 HOH B 19 2019 2019 HOH HOH . O 5 HOH B 20 2020 2020 HOH HOH . O 5 HOH B 21 2021 2021 HOH HOH . O 5 HOH B 22 2022 2022 HOH HOH . O 5 HOH B 23 2023 2023 HOH HOH . O 5 HOH B 24 2024 2024 HOH HOH . O 5 HOH B 25 2025 2025 HOH HOH . O 5 HOH B 26 2026 2026 HOH HOH . O 5 HOH B 27 2027 2027 HOH HOH . O 5 HOH B 28 2028 2028 HOH HOH . O 5 HOH B 29 2029 2029 HOH HOH . O 5 HOH B 30 2030 2030 HOH HOH . O 5 HOH B 31 2031 2031 HOH HOH . O 5 HOH B 32 2032 2032 HOH HOH . O 5 HOH B 33 2033 2033 HOH HOH . O 5 HOH B 34 2034 2034 HOH HOH . O 5 HOH B 35 2035 2035 HOH HOH . O 5 HOH B 36 2036 2036 HOH HOH . O 5 HOH B 37 2037 2037 HOH HOH . O 5 HOH B 38 2038 2038 HOH HOH . O 5 HOH B 39 2039 2039 HOH HOH . O 5 HOH B 40 2040 2040 HOH HOH . O 5 HOH B 41 2041 2041 HOH HOH . O 5 HOH B 42 2042 2042 HOH HOH . O 5 HOH B 43 2043 2043 HOH HOH . O 5 HOH B 44 2044 2044 HOH HOH . O 5 HOH B 45 2045 2045 HOH HOH . O 5 HOH B 46 2046 2046 HOH HOH . O 5 HOH B 47 2047 2047 HOH HOH . O 5 HOH B 48 2048 2048 HOH HOH . O 5 HOH B 49 2049 2049 HOH HOH . O 5 HOH B 50 2050 2050 HOH HOH . O 5 HOH B 51 2051 2051 HOH HOH . O 5 HOH B 52 2052 2052 HOH HOH . O 5 HOH B 53 2053 2053 HOH HOH . O 5 HOH B 54 2054 2054 HOH HOH . O 5 HOH B 55 2055 2055 HOH HOH . O 5 HOH B 56 2056 2056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 LOZ . . . I 4 75.249 7.527 -2.632 1 32.24 ? C27 LOZ 1216 A 1 HETATM 2 C C29 LOZ . . . I 4 76.167 8.265 -3.344 1 31.17 ? C29 LOZ 1216 A 1 HETATM 3 C C25 LOZ . . . I 4 75.676 6.656 -1.656 1 33.07 ? C25 LOZ 1216 A 1 HETATM 4 C C31 LOZ . . . I 4 77.517 8.152 -3.092 1 33.21 ? C31 LOZ 1216 A 1 HETATM 5 C C7 LOZ . . . I 4 80.432 8.025 -4.746 1 24.43 ? C7 LOZ 1216 A 1 HETATM 6 C C9 LOZ . . . I 4 80.715 9.085 -5.575 1 23.86 ? C9 LOZ 1216 A 1 HETATM 7 C C5 LOZ . . . I 4 81.508 9.106 -2.886 1 24.74 ? C5 LOZ 1216 A 1 HETATM 8 C C24 LOZ . . . I 4 77.022 6.554 -1.414 1 33.36 ? C24 LOZ 1216 A 1 HETATM 9 C C23 LOZ . . . I 4 77.941 7.28 -2.117 1 32.92 ? C23 LOZ 1216 A 1 HETATM 10 C C6 LOZ . . . I 4 80.811 8.017 -3.418 1 26.05 ? C6 LOZ 1216 A 1 HETATM 11 C C11 LOZ . . . I 4 81.393 10.147 -5.046 1 23.07 ? C11 LOZ 1216 A 1 HETATM 12 C C17 LOZ . . . I 4 81.778 10.155 -3.743 1 23.5 ? C17 LOZ 1216 A 1 HETATM 13 C C2 LOZ . . . I 4 81.981 9.238 -1.479 1 25.33 ? C2 LOZ 1216 A 1 HETATM 14 C C40 LOZ . . . I 4 80.782 4.007 -0.716 1 47.44 ? C40 LOZ 1216 A 1 HETATM 15 C C33 LOZ . . . I 4 77.644 5.678 -0.407 1 34.81 ? C33 LOZ 1216 A 1 HETATM 16 C C13 LOZ . . . I 4 82.214 12.075 -4.633 1 24.99 ? C13 LOZ 1216 A 1 HETATM 17 C C21 LOZ . . . I 4 79.333 7.014 -1.652 1 32.97 ? C21 LOZ 1216 A 1 HETATM 18 C C36 LOZ . . . I 4 79.124 5.831 -0.703 1 36.79 ? C36 LOZ 1216 A 1 HETATM 19 C C18 LOZ . . . I 4 80.407 6.763 -2.692 1 29.77 ? C18 LOZ 1216 A 1 HETATM 20 C C42 LOZ . . . I 4 81.012 4.192 0.755 1 50.13 ? C42 LOZ 1216 A 1 HETATM 21 C C45 LOZ . . . I 4 82.104 5.228 0.961 1 51.16 ? C45 LOZ 1216 A 1 HETATM 22 C C48 LOZ . . . I 4 83.239 4.628 1.766 1 51.94 ? C48 LOZ 1216 A 1 HETATM 23 N N38 LOZ . . . I 4 79.626 4.576 -1.206 1 43.76 ? N38 LOZ 1216 A 1 HETATM 24 N N51 LOZ . . . I 4 83.432 5.411 3.012 1 51.79 ? N51 LOZ 1216 A 1 HETATM 25 O O3 LOZ . . . I 4 81.996 10.401 -0.977 1 24.33 ? O3 LOZ 1216 A 1 HETATM 26 O O1 LOZ . . . I 4 82.363 8.203 -0.871 1 26.24 ? O1 LOZ 1216 A 1 HETATM 27 O O41 LOZ . . . I 4 81.576 3.382 -1.402 1 53.15 ? O41 LOZ 1216 A 1 HETATM 28 O O12 LOZ . . . I 4 81.747 11.276 -5.729 1 23.82 ? O12 LOZ 1216 A 1 HETATM 29 O O16 LOZ . . . I 4 82.439 11.323 -3.429 1 25.31 ? O16 LOZ 1216 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #