data_4CGI # _model_server_result.job_id o_4SpAtMNZOnsqMmnRFmmQ _model_server_result.datetime_utc '2024-11-08 03:47:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1214}' # _entry.id 4CGI # _exptl.entry_id 4CGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.49 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[(1S,2S)-2-(6-azanylhexanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CGI _cell.length_a 71.05 _cell.length_b 71.05 _cell.length_c 66.38 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N # _chem_comp.formula 'C24 H28 N2 O5' _chem_comp.formula_weight 424.49 _chem_comp.id NZL _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[(1S,2S)-2-(6-azanylhexanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 NZL sing 243 n y C27 C28 NZL doub 244 n y C26 C25 NZL doub 245 n y C28 C23 NZL sing 246 n y C25 C24 NZL sing 247 n y C3 C4 NZL sing 248 n y C3 C2 NZL doub 249 n y C4 C5 NZL doub 250 n y C1 C2 NZL sing 251 n y C1 C6 NZL doub 252 n y C1 C29 NZL sing 253 n n C23 C24 NZL doub 254 n y C23 C22 NZL sing 255 n n C24 C11 NZL sing 256 n n C2 C10 NZL sing 257 n n C5 C6 NZL sing 258 n y C5 O9 NZL sing 259 n n C6 O7 NZL sing 260 n n C29 O31 NZL sing 261 n n C29 O30 NZL doub 262 n n C14 C16 NZL sing 263 n n C14 N13 NZL sing 264 n n C14 O15 NZL doub 265 n n C22 C12 NZL sing 266 n n C8 O9 NZL sing 267 n n C8 O7 NZL sing 268 n n C11 C12 NZL sing 269 n n C11 C10 NZL sing 270 n n C12 N13 NZL sing 271 n n C16 C17 NZL sing 272 n n C17 C18 NZL sing 273 n n C18 C19 NZL sing 274 n n C19 C20 NZL sing 275 n n C20 N21 NZL sing 276 n n C27 H27 NZL sing 277 n n C26 H26 NZL sing 278 n n C28 H28 NZL sing 279 n n C25 H25 NZL sing 280 n n C3 H3 NZL sing 281 n n C4 H4 NZL sing 282 n n C22 H221 NZL sing 283 n n C22 H222 NZL sing 284 n n C11 H11 NZL sing 285 n n C10 H101 NZL sing 286 n n C10 H102 NZL sing 287 n n O31 H31 NZL sing 288 n n C16 H161 NZL sing 289 n n C16 H162 NZL sing 290 n n N13 H13 NZL sing 291 n n C12 H12 NZL sing 292 n n C8 H81C NZL sing 293 n n C8 H82C NZL sing 294 n n C17 H171 NZL sing 295 n n C17 H172 NZL sing 296 n n C18 H181 NZL sing 297 n n C18 H182 NZL sing 298 n n C19 H191 NZL sing 299 n n C19 H192 NZL sing 300 n n C20 H201 NZL sing 301 n n C20 H202 NZL sing 302 n n N21 H211 NZL sing 303 n n N21 H212 NZL sing 304 n n # _atom_sites.entry_id 4CGI _atom_sites.fract_transf_matrix[1][1] 0.014075 _atom_sites.fract_transf_matrix[1][2] 0.008126 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1211 1211 SO4 SO4 . D 2 SO4 A 1 1212 1212 SO4 SO4 . E 2 SO4 A 1 1213 1213 SO4 SO4 . F 3 ACT A 1 1214 1214 ACT ACT . G 4 NZL A 1 1215 1215 NZL NZL . H 2 SO4 B 1 1210 1210 SO4 SO4 . I 2 SO4 B 1 1211 1211 SO4 SO4 . J 2 SO4 B 1 1212 1212 SO4 SO4 . K 3 ACT B 1 1213 1213 ACT ACT . L 4 NZL B 1 1214 1214 NZL NZL . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . M 5 HOH A 11 2011 2011 HOH HOH . M 5 HOH A 12 2012 2012 HOH HOH . M 5 HOH A 13 2013 2013 HOH HOH . M 5 HOH A 14 2014 2014 HOH HOH . M 5 HOH A 15 2015 2015 HOH HOH . M 5 HOH A 16 2016 2016 HOH HOH . M 5 HOH A 17 2017 2017 HOH HOH . M 5 HOH A 18 2018 2018 HOH HOH . M 5 HOH A 19 2019 2019 HOH HOH . M 5 HOH A 20 2020 2020 HOH HOH . M 5 HOH A 21 2021 2021 HOH HOH . M 5 HOH A 22 2022 2022 HOH HOH . M 5 HOH A 23 2023 2023 HOH HOH . M 5 HOH A 24 2024 2024 HOH HOH . M 5 HOH A 25 2025 2025 HOH HOH . M 5 HOH A 26 2026 2026 HOH HOH . M 5 HOH A 27 2027 2027 HOH HOH . M 5 HOH A 28 2028 2028 HOH HOH . M 5 HOH A 29 2029 2029 HOH HOH . M 5 HOH A 30 2030 2030 HOH HOH . M 5 HOH A 31 2031 2031 HOH HOH . M 5 HOH A 32 2032 2032 HOH HOH . M 5 HOH A 33 2033 2033 HOH HOH . M 5 HOH A 34 2034 2034 HOH HOH . M 5 HOH A 35 2035 2035 HOH HOH . M 5 HOH A 36 2036 2036 HOH HOH . M 5 HOH A 37 2037 2037 HOH HOH . M 5 HOH A 38 2038 2038 HOH HOH . N 5 HOH B 1 2001 2001 HOH HOH . N 5 HOH B 2 2002 2002 HOH HOH . N 5 HOH B 3 2003 2003 HOH HOH . N 5 HOH B 4 2004 2004 HOH HOH . N 5 HOH B 5 2005 2005 HOH HOH . N 5 HOH B 6 2006 2006 HOH HOH . N 5 HOH B 7 2007 2007 HOH HOH . N 5 HOH B 8 2008 2008 HOH HOH . N 5 HOH B 9 2009 2009 HOH HOH . N 5 HOH B 10 2010 2010 HOH HOH . N 5 HOH B 11 2011 2011 HOH HOH . N 5 HOH B 12 2012 2012 HOH HOH . N 5 HOH B 13 2013 2013 HOH HOH . N 5 HOH B 14 2014 2014 HOH HOH . N 5 HOH B 15 2015 2015 HOH HOH . N 5 HOH B 16 2016 2016 HOH HOH . N 5 HOH B 17 2017 2017 HOH HOH . N 5 HOH B 18 2018 2018 HOH HOH . N 5 HOH B 19 2019 2019 HOH HOH . N 5 HOH B 20 2020 2020 HOH HOH . N 5 HOH B 21 2021 2021 HOH HOH . N 5 HOH B 22 2022 2022 HOH HOH . N 5 HOH B 23 2023 2023 HOH HOH . N 5 HOH B 24 2024 2024 HOH HOH . N 5 HOH B 25 2025 2025 HOH HOH . N 5 HOH B 26 2026 2026 HOH HOH . N 5 HOH B 27 2027 2027 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 NZL . . . L 4 75.245 7.076 14.137 0.8 46.24 ? C27 NZL 1214 B 1 HETATM 2 C C26 NZL . . . L 4 76.083 7.963 13.499 0.8 46.81 ? C26 NZL 1214 B 1 HETATM 3 C C28 NZL . . . L 4 75.748 6.159 15.025 0.8 44 ? C28 NZL 1214 B 1 HETATM 4 C C25 NZL . . . L 4 77.433 7.969 13.732 0.8 47.91 ? C25 NZL 1214 B 1 HETATM 5 C C3 NZL . . . L 4 80.124 8.081 11.801 0.8 32.38 ? C3 NZL 1214 B 1 HETATM 6 C C4 NZL . . . L 4 80.369 9.154 10.981 0.8 30.51 ? C4 NZL 1214 B 1 HETATM 7 C C1 NZL . . . L 4 81.262 9.13 13.647 0.8 30.26 ? C1 NZL 1214 B 1 HETATM 8 C C23 NZL . . . L 4 77.094 6.168 15.252 0.8 43.9 ? C23 NZL 1214 B 1 HETATM 9 C C24 NZL . . . L 4 77.92 7.051 14.623 0.8 44.32 ? C24 NZL 1214 B 1 HETATM 10 C C2 NZL . . . L 4 80.554 8.053 13.118 0.8 35.39 ? C2 NZL 1214 B 1 HETATM 11 C C5 NZL . . . L 4 81.066 10.2 11.502 0.8 29.7 ? C5 NZL 1214 B 1 HETATM 12 C C6 NZL . . . L 4 81.492 10.189 12.791 0.8 30.44 ? C6 NZL 1214 B 1 HETATM 13 C C29 NZL . . . L 4 81.772 9.22 15.038 0.8 29.15 ? C29 NZL 1214 B 1 HETATM 14 C C14 NZL . . . L 4 81.326 4.603 16.505 0.8 48.51 ? C14 NZL 1214 B 1 HETATM 15 C C22 NZL . . . L 4 77.82 5.268 16.155 0.8 43.78 ? C22 NZL 1214 B 1 HETATM 16 C C8 NZL . . . L 4 81.98 12.091 11.879 0.8 32.28 ? C8 NZL 1214 B 1 HETATM 17 C C11 NZL . . . L 4 79.313 6.864 15.025 0.8 42.44 ? C11 NZL 1214 B 1 HETATM 18 C C12 NZL . . . L 4 79.231 5.482 15.661 0.8 46.49 ? C12 NZL 1214 B 1 HETATM 19 C C10 NZL . . . L 4 80.211 6.778 13.835 0.8 40.54 ? C10 NZL 1214 B 1 HETATM 20 C C16 NZL . . . L 4 82.489 5.183 17.238 0.8 48 ? C16 NZL 1214 B 1 HETATM 21 C C17 NZL . . . L 4 82.519 4.583 18.62 0.8 47.89 ? C17 NZL 1214 B 1 HETATM 22 C C18 NZL . . . L 4 83.372 5.432 19.536 0.8 48 ? C18 NZL 1214 B 1 HETATM 23 C C19 NZL . . . L 4 82.873 5.224 20.945 0.8 52.08 ? C19 NZL 1214 B 1 HETATM 24 C C20 NZL . . . L 4 83.924 5.561 21.978 0.8 53.28 ? C20 NZL 1214 B 1 HETATM 25 N N13 NZL . . . L 4 80.183 5.328 16.729 0.8 51.94 ? N13 NZL 1214 B 1 HETATM 26 N N21 NZL . . . L 4 84.14 7.025 21.976 0.8 54.03 ? N21 NZL 1214 B 1 HETATM 27 O O31 NZL . . . L 4 81.738 10.36 15.586 0.8 27 ? O31 NZL 1214 B 1 HETATM 28 O O30 NZL . . . L 4 82.195 8.177 15.598 0.8 27.44 ? O30 NZL 1214 B 1 HETATM 29 O O15 NZL . . . L 4 81.404 3.608 15.801 0.8 45.23 ? O15 NZL 1214 B 1 HETATM 30 O O9 NZL . . . L 4 81.388 11.333 10.817 0.8 33.24 ? O9 NZL 1214 B 1 HETATM 31 O O7 NZL . . . L 4 82.16 11.346 13.09 0.8 32.37 ? O7 NZL 1214 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #