data_4CGI
#
_model_server_result.job_id            XW5sbJwl039Fp-H7zuWZ_A 
_model_server_result.datetime_utc      '2024-11-26 16:13:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cgi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1215}' 
#
_entry.id    4CGI 
#
_exptl.entry_id    4CGI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              424.49 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[[(1S,2S)-2-(6-azanylhexanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CGI 
_cell.length_a            71.05 
_cell.length_b            71.05 
_cell.length_c            66.38 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CGI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 L N N 
#
_chem_comp.formula           'C24 H28 N2 O5' 
_chem_comp.formula_weight    424.49 
_chem_comp.id                NZL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[[(1S,2S)-2-(6-azanylhexanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C26 NZL sing 243 n y 
C27 C28 NZL doub 244 n y 
C26 C25 NZL doub 245 n y 
C28 C23 NZL sing 246 n y 
C25 C24 NZL sing 247 n y 
C3 C4 NZL sing 248 n y 
C3 C2 NZL doub 249 n y 
C4 C5 NZL doub 250 n y 
C1 C2 NZL sing 251 n y 
C1 C6 NZL doub 252 n y 
C1 C29 NZL sing 253 n n 
C23 C24 NZL doub 254 n y 
C23 C22 NZL sing 255 n n 
C24 C11 NZL sing 256 n n 
C2 C10 NZL sing 257 n n 
C5 C6 NZL sing 258 n y 
C5 O9 NZL sing 259 n n 
C6 O7 NZL sing 260 n n 
C29 O31 NZL sing 261 n n 
C29 O30 NZL doub 262 n n 
C14 C16 NZL sing 263 n n 
C14 N13 NZL sing 264 n n 
C14 O15 NZL doub 265 n n 
C22 C12 NZL sing 266 n n 
C8 O9 NZL sing 267 n n 
C8 O7 NZL sing 268 n n 
C11 C12 NZL sing 269 n n 
C11 C10 NZL sing 270 n n 
C12 N13 NZL sing 271 n n 
C16 C17 NZL sing 272 n n 
C17 C18 NZL sing 273 n n 
C18 C19 NZL sing 274 n n 
C19 C20 NZL sing 275 n n 
C20 N21 NZL sing 276 n n 
C27 H27 NZL sing 277 n n 
C26 H26 NZL sing 278 n n 
C28 H28 NZL sing 279 n n 
C25 H25 NZL sing 280 n n 
C3 H3 NZL sing 281 n n 
C4 H4 NZL sing 282 n n 
C22 H221 NZL sing 283 n n 
C22 H222 NZL sing 284 n n 
C11 H11 NZL sing 285 n n 
C10 H101 NZL sing 286 n n 
C10 H102 NZL sing 287 n n 
O31 H31 NZL sing 288 n n 
C16 H161 NZL sing 289 n n 
C16 H162 NZL sing 290 n n 
N13 H13 NZL sing 291 n n 
C12 H12 NZL sing 292 n n 
C8 H81C NZL sing 293 n n 
C8 H82C NZL sing 294 n n 
C17 H171 NZL sing 295 n n 
C17 H172 NZL sing 296 n n 
C18 H181 NZL sing 297 n n 
C18 H182 NZL sing 298 n n 
C19 H191 NZL sing 299 n n 
C19 H192 NZL sing 300 n n 
C20 H201 NZL sing 301 n n 
C20 H202 NZL sing 302 n n 
N21 H211 NZL sing 303 n n 
N21 H212 NZL sing 304 n n 
#
_atom_sites.entry_id                     4CGI 
_atom_sites.fract_transf_matrix[1][1]    0.014075 
_atom_sites.fract_transf_matrix[1][2]    0.008126 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016252 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015065 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1211 1211 SO4 SO4 . 
D 2 SO4 A 1 1212 1212 SO4 SO4 . 
E 2 SO4 A 1 1213 1213 SO4 SO4 . 
F 3 ACT A 1 1214 1214 ACT ACT . 
G 4 NZL A 1 1215 1215 NZL NZL . 
H 2 SO4 B 1 1210 1210 SO4 SO4 . 
I 2 SO4 B 1 1211 1211 SO4 SO4 . 
J 2 SO4 B 1 1212 1212 SO4 SO4 . 
K 3 ACT B 1 1213 1213 ACT ACT . 
L 4 NZL B 1 1214 1214 NZL NZL . 
M 5 HOH A 1 2001 2001 HOH HOH . 
M 5 HOH A 2 2002 2002 HOH HOH . 
M 5 HOH A 3 2003 2003 HOH HOH . 
M 5 HOH A 4 2004 2004 HOH HOH . 
M 5 HOH A 5 2005 2005 HOH HOH . 
M 5 HOH A 6 2006 2006 HOH HOH . 
M 5 HOH A 7 2007 2007 HOH HOH . 
M 5 HOH A 8 2008 2008 HOH HOH . 
M 5 HOH A 9 2009 2009 HOH HOH . 
M 5 HOH A 10 2010 2010 HOH HOH . 
M 5 HOH A 11 2011 2011 HOH HOH . 
M 5 HOH A 12 2012 2012 HOH HOH . 
M 5 HOH A 13 2013 2013 HOH HOH . 
M 5 HOH A 14 2014 2014 HOH HOH . 
M 5 HOH A 15 2015 2015 HOH HOH . 
M 5 HOH A 16 2016 2016 HOH HOH . 
M 5 HOH A 17 2017 2017 HOH HOH . 
M 5 HOH A 18 2018 2018 HOH HOH . 
M 5 HOH A 19 2019 2019 HOH HOH . 
M 5 HOH A 20 2020 2020 HOH HOH . 
M 5 HOH A 21 2021 2021 HOH HOH . 
M 5 HOH A 22 2022 2022 HOH HOH . 
M 5 HOH A 23 2023 2023 HOH HOH . 
M 5 HOH A 24 2024 2024 HOH HOH . 
M 5 HOH A 25 2025 2025 HOH HOH . 
M 5 HOH A 26 2026 2026 HOH HOH . 
M 5 HOH A 27 2027 2027 HOH HOH . 
M 5 HOH A 28 2028 2028 HOH HOH . 
M 5 HOH A 29 2029 2029 HOH HOH . 
M 5 HOH A 30 2030 2030 HOH HOH . 
M 5 HOH A 31 2031 2031 HOH HOH . 
M 5 HOH A 32 2032 2032 HOH HOH . 
M 5 HOH A 33 2033 2033 HOH HOH . 
M 5 HOH A 34 2034 2034 HOH HOH . 
M 5 HOH A 35 2035 2035 HOH HOH . 
M 5 HOH A 36 2036 2036 HOH HOH . 
M 5 HOH A 37 2037 2037 HOH HOH . 
M 5 HOH A 38 2038 2038 HOH HOH . 
N 5 HOH B 1 2001 2001 HOH HOH . 
N 5 HOH B 2 2002 2002 HOH HOH . 
N 5 HOH B 3 2003 2003 HOH HOH . 
N 5 HOH B 4 2004 2004 HOH HOH . 
N 5 HOH B 5 2005 2005 HOH HOH . 
N 5 HOH B 6 2006 2006 HOH HOH . 
N 5 HOH B 7 2007 2007 HOH HOH . 
N 5 HOH B 8 2008 2008 HOH HOH . 
N 5 HOH B 9 2009 2009 HOH HOH . 
N 5 HOH B 10 2010 2010 HOH HOH . 
N 5 HOH B 11 2011 2011 HOH HOH . 
N 5 HOH B 12 2012 2012 HOH HOH . 
N 5 HOH B 13 2013 2013 HOH HOH . 
N 5 HOH B 14 2014 2014 HOH HOH . 
N 5 HOH B 15 2015 2015 HOH HOH . 
N 5 HOH B 16 2016 2016 HOH HOH . 
N 5 HOH B 17 2017 2017 HOH HOH . 
N 5 HOH B 18 2018 2018 HOH HOH . 
N 5 HOH B 19 2019 2019 HOH HOH . 
N 5 HOH B 20 2020 2020 HOH HOH . 
N 5 HOH B 21 2021 2021 HOH HOH . 
N 5 HOH B 22 2022 2022 HOH HOH . 
N 5 HOH B 23 2023 2023 HOH HOH . 
N 5 HOH B 24 2024 2024 HOH HOH . 
N 5 HOH B 25 2025 2025 HOH HOH . 
N 5 HOH B 26 2026 2026 HOH HOH . 
N 5 HOH B 27 2027 2027 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 NZL . . . G 4 75.089 34.024 0.839 0.8 46.33 ? C27 NZL 1215 A 1 
HETATM 2 C C26 NZL . . . G 4 75.909 33.159 1.531 0.8 45.99 ? C26 NZL 1215 A 1 
HETATM 3 C C28 NZL . . . G 4 75.597 34.846 -0.137 0.8 44.07 ? C28 NZL 1215 A 1 
HETATM 4 C C25 NZL . . . G 4 77.25 33.081 1.261 0.8 46.65 ? C25 NZL 1215 A 1 
HETATM 5 C C3 NZL . . . G 4 80.052 32.928 3.028 0.8 31.67 ? C3 NZL 1215 A 1 
HETATM 6 C C4 NZL . . . G 4 80.343 31.896 3.882 0.8 29.35 ? C4 NZL 1215 A 1 
HETATM 7 C C1 NZL . . . G 4 81.226 31.876 1.202 0.8 28.72 ? C1 NZL 1215 A 1 
HETATM 8 C C23 NZL . . . G 4 76.934 34.767 -0.4 0.8 43.28 ? C23 NZL 1215 A 1 
HETATM 9 C C24 NZL . . . G 4 77.742 33.904 0.281 0.8 44.24 ? C24 NZL 1215 A 1 
HETATM 10 C C2 NZL . . . G 4 80.475 32.93 1.709 0.8 33.53 ? C2 NZL 1215 A 1 
HETATM 11 C C5 NZL . . . G 4 81.082 30.866 3.384 0.8 29.04 ? C5 NZL 1215 A 1 
HETATM 12 C C6 NZL . . . G 4 81.503 30.86 2.091 0.8 29.29 ? C6 NZL 1215 A 1 
HETATM 13 C C29 NZL . . . G 4 81.734 31.768 -0.194 0.8 29.02 ? C29 NZL 1215 A 1 
HETATM 14 C C14 NZL . . . G 4 81.147 36.268 -1.729 0.8 48.75 ? C14 NZL 1215 A 1 
HETATM 15 C C22 NZL . . . G 4 77.669 35.56 -1.397 0.8 41.7 ? C22 NZL 1215 A 1 
HETATM 16 C C8 NZL . . . G 4 82.022 28.994 3.034 0.8 30.47 ? C8 NZL 1215 A 1 
HETATM 17 C C11 NZL . . . G 4 79.128 34.004 -0.175 0.8 40.53 ? C11 NZL 1215 A 1 
HETATM 18 C C12 NZL . . . G 4 79.075 35.35 -0.877 0.8 44.23 ? C12 NZL 1215 A 1 
HETATM 19 C C10 NZL . . . G 4 80.076 34.163 0.962 0.8 38.5 ? C10 NZL 1215 A 1 
HETATM 20 C C16 NZL . . . G 4 82.349 35.765 -2.444 0.8 48.22 ? C16 NZL 1215 A 1 
HETATM 21 C C17 NZL . . . G 4 82.312 36.339 -3.83 0.8 49.24 ? C17 NZL 1215 A 1 
HETATM 22 C C18 NZL . . . G 4 83.404 35.681 -4.63 0.8 50.21 ? C18 NZL 1215 A 1 
HETATM 23 C C19 NZL . . . G 4 83.163 35.946 -6.093 0.8 53.52 ? C19 NZL 1215 A 1 
HETATM 24 C C20 NZL . . . G 4 83.873 34.892 -6.905 0.8 54.62 ? C20 NZL 1215 A 1 
HETATM 25 N N13 NZL . . . G 4 80.073 35.429 -1.908 0.8 48.28 ? N13 NZL 1215 A 1 
HETATM 26 N N21 NZL . . . G 4 83.664 35.237 -8.326 0.8 57.54 ? N21 NZL 1215 A 1 
HETATM 27 O O31 NZL . . . G 4 81.733 30.626 -0.739 0.8 26.89 ? O31 NZL 1215 A 1 
HETATM 28 O O30 NZL . . . G 4 82.141 32.811 -0.764 0.8 27.75 ? O30 NZL 1215 A 1 
HETATM 29 O O15 NZL . . . G 4 81.152 37.302 -1.074 0.8 44.31 ? O15 NZL 1215 A 1 
HETATM 30 O O9 NZL . . . G 4 81.458 29.769 4.097 0.8 29.91 ? O9 NZL 1215 A 1 
HETATM 31 O O7 NZL . . . G 4 82.218 29.727 1.818 0.8 31.45 ? O7 NZL 1215 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#