data_4CGJ # _model_server_result.job_id 3iBX-OhXZDRFX0rabSgiwA _model_server_result.datetime_utc '2024-11-22 05:29:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1216}' # _entry.id 4CGJ # _exptl.entry_id 4CGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.49 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[[(1S,2S)-2-(6-azanylhexanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CGJ _cell.length_a 71.123 _cell.length_b 71.123 _cell.length_c 66.905 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 N N N # _chem_comp.formula 'C24 H28 N2 O5' _chem_comp.formula_weight 424.49 _chem_comp.id NZL _chem_comp.mon_nstd_flag . _chem_comp.name '5-[[(1S,2S)-2-(6-azanylhexanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 NZL sing 243 n y C27 C28 NZL doub 244 n y C26 C25 NZL doub 245 n y C28 C23 NZL sing 246 n y C25 C24 NZL sing 247 n y C3 C4 NZL sing 248 n y C3 C2 NZL doub 249 n y C4 C5 NZL doub 250 n y C1 C2 NZL sing 251 n y C1 C6 NZL doub 252 n y C1 C29 NZL sing 253 n n C23 C24 NZL doub 254 n y C23 C22 NZL sing 255 n n C24 C11 NZL sing 256 n n C2 C10 NZL sing 257 n n C5 C6 NZL sing 258 n y C5 O9 NZL sing 259 n n C6 O7 NZL sing 260 n n C29 O31 NZL sing 261 n n C29 O30 NZL doub 262 n n C14 C16 NZL sing 263 n n C14 N13 NZL sing 264 n n C14 O15 NZL doub 265 n n C22 C12 NZL sing 266 n n C8 O9 NZL sing 267 n n C8 O7 NZL sing 268 n n C11 C12 NZL sing 269 n n C11 C10 NZL sing 270 n n C12 N13 NZL sing 271 n n C16 C17 NZL sing 272 n n C17 C18 NZL sing 273 n n C18 C19 NZL sing 274 n n C19 C20 NZL sing 275 n n C20 N21 NZL sing 276 n n C27 H27 NZL sing 277 n n C26 H26 NZL sing 278 n n C28 H28 NZL sing 279 n n C25 H25 NZL sing 280 n n C3 H3 NZL sing 281 n n C4 H4 NZL sing 282 n n C22 H221 NZL sing 283 n n C22 H222 NZL sing 284 n n C11 H11 NZL sing 285 n n C10 H101 NZL sing 286 n n C10 H102 NZL sing 287 n n O31 H31 NZL sing 288 n n C16 H161 NZL sing 289 n n C16 H162 NZL sing 290 n n N13 H13 NZL sing 291 n n C12 H12 NZL sing 292 n n C8 H81C NZL sing 293 n n C8 H82C NZL sing 294 n n C17 H171 NZL sing 295 n n C17 H172 NZL sing 296 n n C18 H181 NZL sing 297 n n C18 H182 NZL sing 298 n n C19 H191 NZL sing 299 n n C19 H192 NZL sing 300 n n C20 H201 NZL sing 301 n n C20 H202 NZL sing 302 n n N21 H211 NZL sing 303 n n N21 H212 NZL sing 304 n n # _atom_sites.entry_id 4CGJ _atom_sites.fract_transf_matrix[1][1] 0.01406 _atom_sites.fract_transf_matrix[1][2] 0.008118 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 2 SO4 A 1 1213 1213 SO4 SO4 . G 3 ACT A 1 1214 1214 ACT ACT . H 3 ACT A 1 1215 1215 ACT ACT . I 4 NZL A 1 1216 1216 NZL NZL . J 2 SO4 B 1 1210 1210 SO4 SO4 . K 2 SO4 B 1 1211 1211 SO4 SO4 . L 2 SO4 B 1 1212 1212 SO4 SO4 . M 2 SO4 B 1 1213 1213 SO4 SO4 . N 4 NZL B 1 1214 1214 NZL NZL . O 5 HOH A 1 2001 2001 HOH HOH . O 5 HOH A 2 2002 2002 HOH HOH . O 5 HOH A 3 2003 2003 HOH HOH . O 5 HOH A 4 2004 2004 HOH HOH . O 5 HOH A 5 2005 2005 HOH HOH . O 5 HOH A 6 2006 2006 HOH HOH . O 5 HOH A 7 2007 2007 HOH HOH . O 5 HOH A 8 2008 2008 HOH HOH . O 5 HOH A 9 2009 2009 HOH HOH . O 5 HOH A 10 2010 2010 HOH HOH . O 5 HOH A 11 2011 2011 HOH HOH . O 5 HOH A 12 2012 2012 HOH HOH . O 5 HOH A 13 2013 2013 HOH HOH . O 5 HOH A 14 2014 2014 HOH HOH . O 5 HOH A 15 2015 2015 HOH HOH . O 5 HOH A 16 2016 2016 HOH HOH . O 5 HOH A 17 2017 2017 HOH HOH . O 5 HOH A 18 2018 2018 HOH HOH . O 5 HOH A 19 2019 2019 HOH HOH . O 5 HOH A 20 2020 2020 HOH HOH . O 5 HOH A 21 2021 2021 HOH HOH . O 5 HOH A 22 2022 2022 HOH HOH . O 5 HOH A 23 2023 2023 HOH HOH . O 5 HOH A 24 2024 2024 HOH HOH . O 5 HOH A 25 2025 2025 HOH HOH . O 5 HOH A 26 2026 2026 HOH HOH . O 5 HOH A 27 2027 2027 HOH HOH . O 5 HOH A 28 2028 2028 HOH HOH . O 5 HOH A 29 2029 2029 HOH HOH . O 5 HOH A 30 2030 2030 HOH HOH . O 5 HOH A 31 2031 2031 HOH HOH . O 5 HOH A 32 2032 2032 HOH HOH . O 5 HOH A 33 2033 2033 HOH HOH . O 5 HOH A 34 2034 2034 HOH HOH . O 5 HOH A 35 2035 2035 HOH HOH . O 5 HOH A 36 2036 2036 HOH HOH . O 5 HOH A 37 2037 2037 HOH HOH . O 5 HOH A 38 2038 2038 HOH HOH . O 5 HOH A 39 2039 2039 HOH HOH . O 5 HOH A 40 2040 2040 HOH HOH . O 5 HOH A 41 2041 2041 HOH HOH . O 5 HOH A 42 2042 2042 HOH HOH . O 5 HOH A 43 2043 2043 HOH HOH . O 5 HOH A 44 2044 2044 HOH HOH . O 5 HOH A 45 2045 2045 HOH HOH . O 5 HOH A 46 2046 2046 HOH HOH . O 5 HOH A 47 2047 2047 HOH HOH . O 5 HOH A 48 2048 2048 HOH HOH . O 5 HOH A 49 2049 2049 HOH HOH . O 5 HOH A 50 2050 2050 HOH HOH . O 5 HOH A 51 2051 2051 HOH HOH . O 5 HOH A 52 2052 2052 HOH HOH . O 5 HOH A 53 2053 2053 HOH HOH . O 5 HOH A 54 2054 2054 HOH HOH . O 5 HOH A 55 2055 2055 HOH HOH . O 5 HOH A 56 2056 2056 HOH HOH . O 5 HOH A 57 2057 2057 HOH HOH . O 5 HOH A 58 2058 2058 HOH HOH . O 5 HOH A 59 2059 2059 HOH HOH . O 5 HOH A 60 2060 2060 HOH HOH . P 5 HOH B 1 2001 2001 HOH HOH . P 5 HOH B 2 2002 2002 HOH HOH . P 5 HOH B 3 2003 2003 HOH HOH . P 5 HOH B 4 2004 2004 HOH HOH . P 5 HOH B 5 2005 2005 HOH HOH . P 5 HOH B 6 2006 2006 HOH HOH . P 5 HOH B 7 2007 2007 HOH HOH . P 5 HOH B 8 2008 2008 HOH HOH . P 5 HOH B 9 2009 2009 HOH HOH . P 5 HOH B 10 2010 2010 HOH HOH . P 5 HOH B 11 2011 2011 HOH HOH . P 5 HOH B 12 2012 2012 HOH HOH . P 5 HOH B 13 2013 2013 HOH HOH . P 5 HOH B 14 2014 2014 HOH HOH . P 5 HOH B 15 2015 2015 HOH HOH . P 5 HOH B 16 2016 2016 HOH HOH . P 5 HOH B 17 2017 2017 HOH HOH . P 5 HOH B 18 2018 2018 HOH HOH . P 5 HOH B 19 2019 2019 HOH HOH . P 5 HOH B 20 2020 2020 HOH HOH . P 5 HOH B 21 2021 2021 HOH HOH . P 5 HOH B 22 2022 2022 HOH HOH . P 5 HOH B 23 2023 2023 HOH HOH . P 5 HOH B 24 2024 2024 HOH HOH . P 5 HOH B 25 2025 2025 HOH HOH . P 5 HOH B 26 2026 2026 HOH HOH . P 5 HOH B 27 2027 2027 HOH HOH . P 5 HOH B 28 2028 2028 HOH HOH . P 5 HOH B 29 2029 2029 HOH HOH . P 5 HOH B 30 2030 2030 HOH HOH . P 5 HOH B 31 2031 2031 HOH HOH . P 5 HOH B 32 2032 2032 HOH HOH . P 5 HOH B 33 2033 2033 HOH HOH . P 5 HOH B 34 2034 2034 HOH HOH . P 5 HOH B 35 2035 2035 HOH HOH . P 5 HOH B 36 2036 2036 HOH HOH . P 5 HOH B 37 2037 2037 HOH HOH . P 5 HOH B 38 2038 2038 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 NZL . . . I 4 -8.69 40.792 -0.705 1 26.83 ? C27 NZL 1216 A 1 HETATM 2 C C26 NZL . . . I 4 -9.811 41.264 -1.349 1 26.93 ? C26 NZL 1216 A 1 HETATM 3 C C28 NZL . . . I 4 -8.081 41.561 0.257 1 27.79 ? C28 NZL 1216 A 1 HETATM 4 C C25 NZL . . . I 4 -10.343 42.499 -1.039 1 27.28 ? C25 NZL 1216 A 1 HETATM 5 C C3 NZL . . . I 4 -11.52 45.077 -2.668 1 25.82 ? C3 NZL 1216 A 1 HETATM 6 C C4 NZL . . . I 4 -12.568 44.773 -3.509 1 24.06 ? C4 NZL 1216 A 1 HETATM 7 C C1 NZL . . . I 4 -13.009 45.441 -0.807 1 24.45 ? C1 NZL 1216 A 1 HETATM 8 C C23 NZL . . . I 4 -8.618 42.788 0.554 1 28.76 ? C23 NZL 1216 A 1 HETATM 9 C C24 NZL . . . I 4 -9.729 43.269 -0.078 1 27.71 ? C24 NZL 1216 A 1 HETATM 10 C C2 NZL . . . I 4 -11.719 45.403 -1.335 1 26.2 ? C2 NZL 1216 A 1 HETATM 11 C C5 NZL . . . I 4 -13.826 44.813 -2.978 1 22.69 ? C5 NZL 1216 A 1 HETATM 12 C C6 NZL . . . I 4 -14.037 45.139 -1.672 1 23.23 ? C6 NZL 1216 A 1 HETATM 13 C C29 NZL . . . I 4 -13.373 45.786 0.602 1 25.66 ? C29 NZL 1216 A 1 HETATM 14 C C14 NZL . . . I 4 -8.615 47.163 2.21 1 44.13 ? C14 NZL 1216 A 1 HETATM 15 C C22 NZL . . . I 4 -8.091 43.735 1.554 1 31.52 ? C22 NZL 1216 A 1 HETATM 16 C C8 NZL . . . I 4 -15.924 44.622 -2.585 1 22.56 ? C8 NZL 1216 A 1 HETATM 17 C C11 NZL . . . I 4 -10.099 44.619 0.438 1 29.64 ? C11 NZL 1216 A 1 HETATM 18 C C12 NZL . . . I 4 -8.794 45.004 1.124 1 33.62 ? C12 NZL 1216 A 1 HETATM 19 C C10 NZL . . . I 4 -10.463 45.7 -0.572 1 28.23 ? C10 NZL 1216 A 1 HETATM 20 C C16 NZL . . . I 4 -8.903 47.896 3.48 1 46.75 ? C16 NZL 1216 A 1 HETATM 21 C C17 NZL . . . I 4 -10.368 48.267 3.502 1 48.29 ? C17 NZL 1216 A 1 HETATM 22 C C18 NZL . . . I 4 -10.626 49.28 4.596 1 48.75 ? C18 NZL 1216 A 1 HETATM 23 C C19 NZL . . . I 4 -10.41 48.645 5.95 1 49.53 ? C19 NZL 1216 A 1 HETATM 24 C C20 NZL . . . I 4 -10.926 49.559 7.033 1 50.35 ? C20 NZL 1216 A 1 HETATM 25 N N13 NZL . . . I 4 -9.036 45.857 2.252 1 38.9 ? N13 NZL 1216 A 1 HETATM 26 N N21 NZL . . . I 4 -12.334 49.198 7.302 1 50.73 ? N21 NZL 1216 A 1 HETATM 27 O O31 NZL . . . I 4 -14.336 45.159 1.133 1 22.15 ? O31 NZL 1216 A 1 HETATM 28 O O30 NZL . . . I 4 -12.731 46.712 1.166 1 24.58 ? O30 NZL 1216 A 1 HETATM 29 O O15 NZL . . . I 4 -8.062 47.697 1.262 1 43.22 ? O15 NZL 1216 A 1 HETATM 30 O O9 NZL . . . I 4 -14.971 44.541 -3.658 1 21.45 ? O9 NZL 1216 A 1 HETATM 31 O O7 NZL . . . I 4 -15.373 45.116 -1.35 1 23.21 ? O7 NZL 1216 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #