data_4CI0 # _model_server_result.job_id uAZTJXt4ib1Np2WZujgCtg _model_server_result.datetime_utc '2024-12-18 17:02:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ci0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1276}' # _entry.id 4CI0 # _exptl.entry_id 4CI0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 351.64 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CI0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 36-MERIC 36 'complete point assembly' 1 ? trimeric 3 'point asymmetric unit' 2 ? trimeric 3 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 (1-12) A,B,C,D,E,F,G,H,I,J,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.000835 -0.816897 -0.576783 -0.707761 0.406987 -0.57744 0.706452 0.408706 -0.577828 206.41919 129.75935 -79.22173 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.001851 0.577463 -0.816415 0.577463 -0.665918 -0.472324 -0.816415 -0.472324 -0.332231 183.33227 231.62582 387.97453 3 'point symmetry operation' ? ? 0.00185 -0.576098 0.817378 -0.576098 -0.668724 -0.470021 0.817378 -0.470021 -0.333126 111.58786 402.00334 146.56508 4 'point symmetry operation' ? ? -0.999999 -0.001365 -0.000964 -0.001365 0.334642 0.942344 -0.000964 0.942344 -0.334643 295.60978 -40.86379 58.30345 5 'point symmetry operation' ? ? -0.5 0.866025 -0.000192 -0.866025 -0.499999 0.001279 0.001012 0.000806 0.999999 93.13969 349.95069 -0.26871 6 'point symmetry operation' ? ? 0.50118 -0.865343 -0.000773 -0.288172 -0.167743 0.942772 -0.815951 -0.472276 -0.333437 201.99293 75.864 388.07771 7 'point symmetry operation' ? ? -0.499998 -0.290992 -0.815675 0.287492 0.832675 -0.473286 0.816915 -0.471142 -0.332678 385.46275 52.49896 146.73318 8 'point symmetry operation' ? ? 0.498818 0.29031 0.81664 0.866705 -0.164933 -0.470765 -0.001977 0.942612 -0.333884 -90.06545 114.45172 58.30089 9 'point symmetry operation' ? ? -0.5 -0.866025 0.001012 0.866025 -0.499999 0.000806 -0.000192 0.001279 0.999999 349.63611 94.31397 -0.16112 10 'point symmetry operation' ? ? -0.499998 0.287492 0.816915 -0.290992 0.832675 -0.471142 -0.815675 -0.473286 -0.332678 57.76888 137.58434 388.07422 11 'point symmetry operation' ? ? 0.498818 0.866705 -0.001977 0.29031 -0.164933 0.942612 0.81664 -0.470765 -0.333884 -54.15439 -9.93136 146.89672 12 'point symmetry operation' ? ? 0.50118 -0.288172 -0.815951 -0.865343 -0.167743 -0.472276 -0.000773 0.942772 -0.333437 237.27931 370.79842 58.03323 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 63 1_555 A SG CYS 380 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? disulf ? disulf2 A SG CYS 66 A CYS 66 1_555 A SG CYS 383 A CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc1 A OE1 GLU 44 A GLU 44 1_555 F FE FE2 . A FE2 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 A OE2 GLU 44 A GLU 44 1_555 F FE FE2 . A FE2 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 A SG CYS 63 A CYS 63 1_555 E NI NI . A NI 1388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 A SG CYS 66 A CYS 66 1_555 D FE FE . A FE 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 A SG CYS 66 A CYS 66 1_555 E NI NI . A NI 1388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 A O ALA 347 A ALA 347 1_555 F FE FE2 . A FE2 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc7 A SG CYS 380 A CYS 380 1_555 E NI NI . A NI 1388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 A SG CYS 383 A CYS 383 1_555 D FE FE . A FE 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc9 A SG CYS 383 A CYS 383 1_555 E NI NI . A NI 1388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc10 A NE2 HIS 386 A HIS 386 1_555 F FE FE2 . A FE2 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc11 B SG CYS 57 B CYS 57 1_555 G FE1 SF4 . B SF4 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 B OD1 ASP 60 B ASP 60 1_555 G FE4 SF4 . B SF4 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc13 B OD2 ASP 60 B ASP 60 1_555 G FE4 SF4 . B SF4 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc14 B SG CYS 132 B CYS 132 1_555 G FE2 SF4 . B SF4 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc15 B SG CYS 171 B CYS 171 1_555 G FE3 SF4 . B SF4 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc16 B SG CYS 206 B CYS 206 1_555 J ZN ZN . B ZN 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc17 B SG CYS 208 B CYS 208 1_555 J ZN ZN . B ZN 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc18 B SG CYS 220 B CYS 220 1_555 I FE1 SF4 . B SF4 1276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc19 B SG CYS 223 B CYS 223 1_555 I FE2 SF4 . B SF4 1276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc20 B SG CYS 226 B CYS 226 1_555 I FE4 SF4 . B SF4 1276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc21 B SG CYS 230 B CYS 230 1_555 H FE3 SF4 . B SF4 1275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc22 B SG CYS 249 B CYS 249 1_555 H FE1 SF4 . B SF4 1275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc23 B SG CYS 252 B CYS 252 1_555 H FE2 SF4 . B SF4 1275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc24 B SG CYS 255 B CYS 255 1_555 H FE4 SF4 . B SF4 1275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc25 B SG CYS 259 B CYS 259 1_555 I FE3 SF4 . B SF4 1276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc26 C SG CYS 192 C CYS 192 1_555 K FE3 SF4 . C SF4 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc27 C SG CYS 195 C CYS 195 1_555 K FE2 SF4 . C SF4 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 379 n n FE1 S3 SF4 sing 380 n n FE1 S4 SF4 sing 381 n n FE2 S1 SF4 sing 382 n n FE2 S3 SF4 sing 383 n n FE2 S4 SF4 sing 384 n n FE3 S1 SF4 sing 385 n n FE3 S2 SF4 sing 386 n n FE3 S4 SF4 sing 387 n n FE4 S1 SF4 sing 388 n n FE4 S2 SF4 sing 389 n n FE4 S3 SF4 sing 390 n n # _atom_sites.entry_id 4CI0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE A 1 1387 1387 FE FE . E 5 NI A 1 1388 1388 NI NI . F 6 FE2 A 1 1389 1389 FE2 FE2 . G 7 SF4 B 1 1274 1274 SF4 SF4 . H 7 SF4 B 1 1275 1275 SF4 SF4 . I 7 SF4 B 1 1276 1276 SF4 SF4 . J 8 ZN B 1 1277 1277 ZN ZN . K 7 SF4 C 1 1282 1282 SF4 SF4 . L 9 FAD C 1 1283 1283 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . I 7 164.564 96.243 116.104 1 8.86 ? FE1 SF4 1276 B 1 HETATM 2 FE FE2 SF4 . . . I 7 166.723 96.405 114.487 1 10.18 ? FE2 SF4 1276 B 1 HETATM 3 FE FE3 SF4 . . . I 7 164.552 95.514 113.484 1 8.06 ? FE3 SF4 1276 B 1 HETATM 4 FE FE4 SF4 . . . I 7 164.64 98.113 114.222 1 7.21 ? FE4 SF4 1276 B 1 HETATM 5 S S1 SF4 . . . I 7 165.764 97.124 112.62 1 8.14 ? S1 SF4 1276 B 1 HETATM 6 S S2 SF4 . . . I 7 162.982 96.682 114.604 1 7.42 ? S2 SF4 1276 B 1 HETATM 7 S S3 SF4 . . . I 7 166.009 97.944 115.923 1 6.98 ? S3 SF4 1276 B 1 HETATM 8 S S4 SF4 . . . I 7 165.716 94.592 115.151 1 6.16 ? S4 SF4 1276 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 479 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #