data_4CID # _model_server_result.job_id OaynPJR12gpCBDzCpM58lg _model_server_result.datetime_utc '2024-10-28 02:23:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1540}' # _entry.id 4CID # _exptl.entry_id 4CID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.05 _cell.angle_gamma 90 _cell.entry_id 4CID _cell.length_a 99.851 _cell.length_b 134.653 _cell.length_c 56.068 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CID _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 15.501463 0 -53.882514 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 8 A MSE 1 1_555 A N PHE 9 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TRP 11 A TRP 4 1_555 A N MSE 12 A MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 12 A MSE 5 1_555 A N LYS 13 A LYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C PRO 66 A PRO 59 1_555 A N MSE 67 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C MSE 67 A MSE 60 1_555 A N VAL 68 A VAL 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 A C VAL 107 A VAL 100 1_555 A N MSE 108 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C MSE 108 A MSE 101 1_555 A N HIS 109 A HIS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C PHE 143 A PHE 136 1_555 A N MSE 144 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 144 A MSE 137 1_555 A N CYS 145 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C ASP 229 A ASP 222 1_555 A N MSE 230 A MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C MSE 230 A MSE 223 1_555 A N VAL 231 A VAL 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C LEU 236 A LEU 229 1_555 A N MSE 237 A MSE 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C MSE 237 A MSE 230 1_555 A N ARG 238 A ARG 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 A C LEU 243 A LEU 236 1_555 A N MSE 244 A MSE 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C MSE 244 A MSE 237 1_555 A N TRP 245 A TRP 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 A C GLU 324 A GLU 317 1_555 A N MSE 325 A MSE 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 A C MSE 325 A MSE 318 1_555 A N PRO 326 A PRO 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale18 A C LYS 365 A LYS 358 1_555 A N MSE 366 A MSE 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 A C MSE 366 A MSE 359 1_555 A N GLN 367 A GLN 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 A C LEU 370 A LEU 363 1_555 A N MSE 371 A MSE 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 A C MSE 371 A MSE 364 1_555 A N ALA 372 A ALA 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale22 A C ASP 391 A ASP 384 1_555 A N MSE 392 A MSE 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale23 A C MSE 392 A MSE 385 1_555 A N LEU 393 A LEU 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 A C LEU 400 A LEU 393 1_555 A N MSE 401 A MSE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale25 A C MSE 401 A MSE 394 1_555 A N PRO 402 A PRO 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale26 A C ARG 425 A ARG 418 1_555 A N MSE 426 A MSE 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale27 A C MSE 426 A MSE 419 1_555 A N GLY 427 A GLY 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale28 A C TRP 482 A TRP 475 1_555 A N MSE 483 A MSE 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale29 A C MSE 483 A MSE 476 1_555 A N VAL 484 A VAL 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale30 A C GLY 506 A GLY 499 1_555 A N MSE 507 A MSE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale31 A C MSE 507 A MSE 500 1_555 A N LEU 508 A LEU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG1 THR 79 A THR 72 1_555 D MG MG . A MG 1541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 A OG1 THR 101 A THR 94 1_555 D MG MG . A MG 1541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 A OD1 ASP 501 A ASP 494 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc4 A OD1 ASP 503 A ASP 496 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc5 A OD1 ASP 505 A ASP 498 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc6 A O MSE 507 A MSE 500 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 A OE2 GLU 512 A GLU 505 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc8 A OE1 GLU 512 A GLU 505 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 C O3G ANP . A ANP 1540 1_555 D MG MG . A MG 1541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc10 C O2B ANP . A ANP 1540 1_555 D MG MG . A MG 1541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4CID _atom_sites.fract_transf_matrix[1][1] 0.010015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002881 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 701 701 CA CA . C 3 ANP A 1 1540 1540 ANP ANP . D 4 MG A 1 1541 1541 MG MG . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 11.206 -52.174 -1.984 1 63.32 ? PG ANP 1540 A 1 HETATM 2 O O1G ANP . . . C 3 10.94 -51.378 -3.238 1 63.2 ? O1G ANP 1540 A 1 HETATM 3 O O2G ANP . . . C 3 10.247 -51.845 -0.869 1 65.99 ? O2G ANP 1540 A 1 HETATM 4 O O3G ANP . . . C 3 12.657 -52.26 -1.57 1 62.3 ? O3G ANP 1540 A 1 HETATM 5 P PB ANP . . . C 3 11.833 -54.597 -3.628 1 62.29 ? PB ANP 1540 A 1 HETATM 6 O O1B ANP . . . C 3 11.791 -53.748 -4.876 1 62.96 ? O1B ANP 1540 A 1 HETATM 7 O O2B ANP . . . C 3 13.157 -54.944 -2.983 1 60.39 ? O2B ANP 1540 A 1 HETATM 8 N N3B ANP . . . C 3 10.837 -53.817 -2.425 1 62.84 ? N3B ANP 1540 A 1 HETATM 9 P PA ANP . . . C 3 11.426 -57.306 -3.263 1 60.17 ? PA ANP 1540 A 1 HETATM 10 O O1A ANP . . . C 3 11.143 -57.065 -1.809 1 62.9 ? O1A ANP 1540 A 1 HETATM 11 O O2A ANP . . . C 3 12.788 -57.829 -3.653 1 60.26 ? O2A ANP 1540 A 1 HETATM 12 O O3A ANP . . . C 3 11.117 -55.956 -4.063 1 59.24 ? O3A ANP 1540 A 1 HETATM 13 O O5' ANP . . . C 3 10.259 -58.238 -3.855 1 60.33 ? O5' ANP 1540 A 1 HETATM 14 C C5' ANP . . . C 3 8.936 -57.718 -3.95 1 61.46 ? C5' ANP 1540 A 1 HETATM 15 C C4' ANP . . . C 3 7.916 -58.847 -3.872 1 63.84 ? C4' ANP 1540 A 1 HETATM 16 O O4' ANP . . . C 3 7.789 -59.437 -5.162 1 63.43 ? O4' ANP 1540 A 1 HETATM 17 C C3' ANP . . . C 3 8.31 -59.956 -2.902 1 65.3 ? C3' ANP 1540 A 1 HETATM 18 O O3' ANP . . . C 3 7.171 -60.401 -2.151 1 66.88 ? O3' ANP 1540 A 1 HETATM 19 C C2' ANP . . . C 3 8.853 -61.065 -3.777 1 65.22 ? C2' ANP 1540 A 1 HETATM 20 O O2' ANP . . . C 3 8.493 -62.36 -3.286 1 67.31 ? O2' ANP 1540 A 1 HETATM 21 C C1' ANP . . . C 3 8.229 -60.795 -5.143 1 64.72 ? C1' ANP 1540 A 1 HETATM 22 N N9 ANP . . . C 3 9.179 -60.987 -6.261 1 63.11 ? N9 ANP 1540 A 1 HETATM 23 C C8 ANP . . . C 3 10.447 -60.534 -6.317 1 62.84 ? C8 ANP 1540 A 1 HETATM 24 N N7 ANP . . . C 3 11.029 -60.88 -7.489 1 62.6 ? N7 ANP 1540 A 1 HETATM 25 C C5 ANP . . . C 3 10.116 -61.559 -8.194 1 62.46 ? C5 ANP 1540 A 1 HETATM 26 C C6 ANP . . . C 3 10.089 -62.207 -9.514 1 63.89 ? C6 ANP 1540 A 1 HETATM 27 N N6 ANP . . . C 3 11.206 -62.15 -10.27 1 65.5 ? N6 ANP 1540 A 1 HETATM 28 N N1 ANP . . . C 3 8.946 -62.823 -9.912 1 62.67 ? N1 ANP 1540 A 1 HETATM 29 C C2 ANP . . . C 3 7.854 -62.849 -9.123 1 61 ? C2 ANP 1540 A 1 HETATM 30 N N3 ANP . . . C 3 7.819 -62.275 -7.901 1 60.04 ? N3 ANP 1540 A 1 HETATM 31 C C4 ANP . . . C 3 8.895 -61.63 -7.391 1 61.64 ? C4 ANP 1540 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #