data_4CIU # _model_server_result.job_id svTrALAbjNyONu-4U5ts6g _model_server_result.datetime_utc '2025-07-09 16:36:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ciu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 4CIU # _exptl.entry_id 4CIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CIU _cell.length_a 127.329 _cell.length_b 127.329 _cell.length_c 119.852 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 99 A ASP 241 1_555 A N MSE 100 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 100 A MSE 242 1_555 A N GLY 101 A GLY 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C THR 140 A THR 282 1_555 A N MSE 141 A MSE 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 141 A MSE 283 1_555 A N VAL 142 A VAL 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ASN 155 A ASN 297 1_555 A N MSE 156 A MSE 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 156 A MSE 298 1_555 A N LEU 157 A LEU 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C ARG 260 A ARG 402 1_555 A N MSE 261 A MSE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 261 A MSE 403 1_555 A N GLN 262 A GLN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C LEU 287 A LEU 429 1_555 A N MSE 288 A MSE 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C ASP 300 A ASP 442 1_555 A N MSE 301 A MSE 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 A C MSE 301 A MSE 443 1_555 A N LEU 302 A LEU 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale12 A C ARG 355 A ARG 497 1_555 A N MSE 356 A MSE 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C MSE 356 A MSE 498 1_555 A N SER 357 A SER 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C THR 381 A THR 523 1_555 A N MSE 382 A MSE 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C MSE 382 A MSE 524 1_555 A N ARG 383 A ARG 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C ARG 408 A ARG 550 1_555 A N MSE 409 A MSE 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 A C MSE 409 A MSE 551 1_555 A N MSE 410 A MSE 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 A C MSE 410 A MSE 552 1_555 A N GLU 411 A GLU 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 A C ARG 419 A ARG 561 1_555 A N MSE 420 A MSE 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 A C MSE 420 A MSE 562 1_555 A N GLU 421 A GLU 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 A C PHE 479 A PHE 621 1_555 A N MSE 480 A MSE 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 A C MSE 480 A MSE 622 1_555 A N PHE 481 A PHE 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 A C ALA 486 A ALA 628 1_555 A N MSE 487 A MSE 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 A C MSE 487 A MSE 629 1_555 A N VAL 488 A VAL 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale25 A C ASP 491 A ASP 633 1_555 A N MSE 492 A MSE 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 A C MSE 492 A MSE 634 1_555 A N SER 493 A SER 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 A C PHE 495 A PHE 637 1_555 A N MSE 496 A MSE 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale28 A C MSE 496 A MSE 638 1_555 A N GLU 497 A GLU 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale29 A C ILE 573 A ILE 715 1_555 A N MSE 574 A MSE 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale30 A C MSE 574 A MSE 716 1_555 A N THR 575 A THR 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale31 A C HIS 594 A HIS 736 1_555 A N MSE 595 A MSE 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale32 A C MSE 595 A MSE 737 1_555 A N LYS 596 A LYS 738 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4CIU _atom_sites.fract_transf_matrix[1][1] 0.007854 _atom_sites.fract_transf_matrix[1][2] 0.004534 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 901 901 ADP ADP . C 2 ADP A 1 902 902 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 2.703 28.712 8.817 1 76.08 ? PB ADP 901 A 1 HETATM 2 O O1B ADP . . . B 2 1.895 28.931 7.563 1 78.43 ? O1B ADP 901 A 1 HETATM 3 O O2B ADP . . . B 2 1.981 29.097 10.087 1 75.96 ? O2B ADP 901 A 1 HETATM 4 O O3B ADP . . . B 2 3.429 27.391 8.886 1 71.18 ? O3B ADP 901 A 1 HETATM 5 P PA ADP . . . B 2 4.139 30.916 9.799 1 96.79 ? PA ADP 901 A 1 HETATM 6 O O1A ADP . . . B 2 2.912 31.789 9.918 1 91.64 ? O1A ADP 901 A 1 HETATM 7 O O2A ADP . . . B 2 4.691 30.202 11.01 1 96.03 ? O2A ADP 901 A 1 HETATM 8 O O3A ADP . . . B 2 3.887 29.792 8.677 1 195.19 ? O3A ADP 901 A 1 HETATM 9 O O5' ADP . . . B 2 5.317 31.779 9.123 1 100.71 ? O5' ADP 901 A 1 HETATM 10 C C5' ADP . . . B 2 6.62 31.803 9.699 1 101.32 ? C5' ADP 901 A 1 HETATM 11 C C4' ADP . . . B 2 7.16 33.226 9.678 1 99.97 ? C4' ADP 901 A 1 HETATM 12 O O4' ADP . . . B 2 6.969 33.831 8.397 1 96.23 ? O4' ADP 901 A 1 HETATM 13 C C3' ADP . . . B 2 6.43 34.094 10.692 1 104.21 ? C3' ADP 901 A 1 HETATM 14 O O3' ADP . . . B 2 7.342 34.493 11.719 1 105.85 ? O3' ADP 901 A 1 HETATM 15 C C2' ADP . . . B 2 5.939 35.306 9.925 1 101.82 ? C2' ADP 901 A 1 HETATM 16 O O2' ADP . . . B 2 6.324 36.515 10.586 1 106.02 ? O2' ADP 901 A 1 HETATM 17 C C1' ADP . . . B 2 6.615 35.205 8.568 1 93.75 ? C1' ADP 901 A 1 HETATM 18 N N9 ADP . . . B 2 5.71 35.661 7.485 1 87.76 ? N9 ADP 901 A 1 HETATM 19 C C8 ADP . . . B 2 5.067 34.875 6.603 1 87.7 ? C8 ADP 901 A 1 HETATM 20 N N7 ADP . . . B 2 4.325 35.612 5.737 1 87.48 ? N7 ADP 901 A 1 HETATM 21 C C5 ADP . . . B 2 4.496 36.906 6.065 1 88.84 ? C5 ADP 901 A 1 HETATM 22 C C6 ADP . . . B 2 4.005 38.21 5.563 1 90.44 ? C6 ADP 901 A 1 HETATM 23 N N6 ADP . . . B 2 3.16 38.278 4.507 1 94.44 ? N6 ADP 901 A 1 HETATM 24 N N1 ADP . . . B 2 4.429 39.329 6.192 1 86.48 ? N1 ADP 901 A 1 HETATM 25 C C2 ADP . . . B 2 5.268 39.276 7.243 1 85.3 ? C2 ADP 901 A 1 HETATM 26 N N3 ADP . . . B 2 5.754 38.129 7.75 1 86.39 ? N3 ADP 901 A 1 HETATM 27 C C4 ADP . . . B 2 5.413 36.933 7.214 1 87.8 ? C4 ADP 901 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #