data_4CIV # _model_server_result.job_id ryw-uO65Lu4aUOaFezz2HQ _model_server_result.datetime_utc '2024-12-21 17:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4civ # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4CIV # _exptl.entry_id 4CIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.177 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,4R,5R)-1,4,5-trihydroxy-3-hydroxymethylcyclohex-2-ene-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CIV _cell.length_a 126.18 _cell.length_b 126.18 _cell.length_c 126.18 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 22_545 -y,z-1/2,-x+1/2 0 -1 0 0 0 1 -1 0 0 0 -63.09 63.09 3 'crystal symmetry operation' 30_455 z-1/2,-x,-y+1/2 0 0 1 -1 0 0 0 -1 0 -63.09 0 63.09 4 'crystal symmetry operation' 31_555 -z+1/2,-x,y+1/2 0 0 -1 -1 0 0 0 1 0 63.09 0 63.09 5 'crystal symmetry operation' 29_455 z-1/2,x,y+1/2 0 0 1 1 0 0 0 1 0 -63.09 0 63.09 6 'crystal symmetry operation' 21_545 y,z-1/2,x+1/2 0 1 0 0 0 1 1 0 0 0 -63.09 63.09 7 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 8 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 126.18 9 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 126.18 10 'crystal symmetry operation' 32_555 -z+1/2,x,-y+1/2 0 0 -1 1 0 0 0 -1 0 63.09 0 63.09 11 'crystal symmetry operation' 23_555 y,-z+1/2,-x+1/2 0 1 0 0 0 -1 -1 0 0 0 63.09 63.09 12 'crystal symmetry operation' 24_555 -y,-z+1/2,x+1/2 0 -1 0 0 0 -1 1 0 0 0 63.09 63.09 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H12 O6' _chem_comp.formula_weight 204.177 _chem_comp.id 48P _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,4R,5R)-1,4,5-trihydroxy-3-hydroxymethylcyclohex-2-ene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAE CAM 48P sing 1 n n CAM CAL 48P sing 2 n n CAM CAK 48P sing 3 n n CAL OAD 48P sing 4 n n CAL CAI 48P sing 5 n n CAI CAN 48P sing 6 n n CAN CAJ 48P sing 7 n n CAN OAF 48P sing 8 n n CAN CAG 48P sing 9 n n CAJ OAC 48P doub 10 n n CAJ OAA 48P sing 11 n n CAG CAK 48P doub 12 n n CAK CAH 48P sing 13 n n CAH OAB 48P sing 14 n n OAE HAE 48P sing 15 n n CAM HAM 48P sing 16 n n CAL HAL 48P sing 17 n n OAD HAD 48P sing 18 n n CAI HAI1 48P sing 19 n n CAI HAI2 48P sing 20 n n OAF HAF 48P sing 21 n n CAG HAG 48P sing 22 n n OAA HAA 48P sing 23 n n CAH HAH1 48P sing 24 n n CAH HAH2 48P sing 25 n n OAB HAB 48P sing 26 n n # _atom_sites.entry_id 4CIV _atom_sites.fract_transf_matrix[1][1] 0.007925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 48P A 1 201 201 48P 48P . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAE 48P . . . B 2 13.708 3.683 41.996 1 51.21 ? OAE 48P 201 A 1 HETATM 2 C CAM 48P . . . B 2 13.379 2.704 40.993 1 52.56 ? CAM 48P 201 A 1 HETATM 3 C CAL 48P . . . B 2 11.873 2.398 41.086 1 52.65 ? CAL 48P 201 A 1 HETATM 4 O OAD 48P . . . B 2 11.59 1.699 42.309 1 52.29 ? OAD 48P 201 A 1 HETATM 5 C CAI 48P . . . B 2 11.438 1.533 39.918 1 52.49 ? CAI 48P 201 A 1 HETATM 6 C CAN 48P . . . B 2 11.67 2.291 38.612 1 53.41 ? CAN 48P 201 A 1 HETATM 7 C CAJ 48P . . . B 2 11.659 1.395 37.524 1 55.12 ? CAJ 48P 201 A 1 HETATM 8 O OAC 48P . . . B 2 10.741 1.524 36.691 1 55.98 ? OAC 48P 201 A 1 HETATM 9 O OAA 48P . . . B 2 12.585 0.551 37.439 1 56.2 ? OAA 48P 201 A 1 HETATM 10 O OAF 48P . . . B 2 10.64 3.277 38.463 1 51.72 ? OAF 48P 201 A 1 HETATM 11 C CAG 48P . . . B 2 12.892 2.968 38.593 1 53.36 ? CAG 48P 201 A 1 HETATM 12 C CAK 48P . . . B 2 13.723 3.166 39.701 1 52.67 ? CAK 48P 201 A 1 HETATM 13 C CAH 48P . . . B 2 14.895 3.868 39.468 1 52.41 ? CAH 48P 201 A 1 HETATM 14 O OAB 48P . . . B 2 15.714 3.031 38.643 1 51.58 ? OAB 48P 201 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 526 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #