data_4CJ4
#
_model_server_result.job_id            T0pg8SDr1MJo0l_jJHagSw 
_model_server_result.datetime_utc      '2024-11-08 04:05:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cj4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1215}' 
#
_entry.id    4CJ4 
#
_exptl.entry_id    4CJ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.426 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[(2S)-4-methyl-2-[(pyridin-4-ylcarbonylamino)methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CJ4 
_cell.length_a            71.688 
_cell.length_b            71.688 
_cell.length_c            66.494 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CJ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 P N N 
#
_chem_comp.formula           'C21 H24 N2 O5' 
_chem_comp.formula_weight    384.426 
_chem_comp.id                S3G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[(2S)-4-methyl-2-[(pyridin-4-ylcarbonylamino)methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 S3G sing 283 n y 
C1 C9 S3G doub 284 n y 
C2 C10 S3G doub 285 n y 
C3 C5 S3G doub 286 n y 
C3 C7 S3G sing 287 n y 
C4 C6 S3G sing 288 n y 
C4 C7 S3G doub 289 n y 
C5 N22 S3G sing 290 n y 
C6 N22 S3G doub 291 n y 
C7 C12 S3G sing 292 n n 
C8 C9 S3G sing 293 n y 
C8 C11 S3G doub 294 n y 
C8 C13 S3G sing 295 n n 
C9 C17 S3G sing 296 n n 
C10 C11 S3G sing 297 n y 
C10 O27 S3G sing 298 n n 
C11 O28 S3G sing 299 n n 
C12 N23 S3G sing 300 n n 
C12 O25 S3G doub 301 n n 
C13 O24 S3G sing 302 n n 
C13 O26 S3G doub 303 n n 
C14 O27 S3G sing 304 n n 
C14 O28 S3G sing 305 n n 
C15 C20 S3G sing 306 n n 
C16 C20 S3G sing 307 n n 
C17 C21 S3G sing 308 n n 
C18 C20 S3G sing 309 n n 
C18 C21 S3G sing 310 n n 
C19 C21 S3G sing 311 n n 
C19 N23 S3G sing 312 n n 
C1 H1 S3G sing 313 n n 
C2 H2 S3G sing 314 n n 
C3 H3 S3G sing 315 n n 
C5 H5 S3G sing 316 n n 
C4 H4 S3G sing 317 n n 
C6 H6 S3G sing 318 n n 
C17 H171 S3G sing 319 n n 
C17 H172 S3G sing 320 n n 
N23 H23 S3G sing 321 n n 
O24 H24 S3G sing 322 n n 
C14 H141 S3G sing 323 n n 
C14 H142 S3G sing 324 n n 
C15 H151 S3G sing 325 n n 
C15 H152 S3G sing 326 n n 
C15 H153 S3G sing 327 n n 
C20 H20 S3G sing 328 n n 
C16 H161 S3G sing 329 n n 
C16 H162 S3G sing 330 n n 
C16 H163 S3G sing 331 n n 
C21 H21 S3G sing 332 n n 
C18 H181 S3G sing 333 n n 
C18 H182 S3G sing 334 n n 
C19 H191 S3G sing 335 n n 
C19 H192 S3G sing 336 n n 
#
_atom_sites.entry_id                     4CJ4 
_atom_sites.fract_transf_matrix[1][1]    0.013949 
_atom_sites.fract_transf_matrix[1][2]    0.008054 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016107 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1210 1210 SO4 SO4 . 
D 2 SO4 A 1 1211 1211 SO4 SO4 . 
E 2 SO4 A 1 1212 1212 SO4 SO4 . 
F 3 ACT A 1 1213 1213 ACT ACT . 
G 3 ACT A 1 1214 1214 ACT ACT . 
H 3 ACT A 1 1215 1215 ACT ACT . 
I 4 CL A 1 1216 1216 CL CL . 
J 5 S3G A 1 1217 1217 S3G S3G . 
K 2 SO4 B 1 1210 1210 SO4 SO4 . 
L 2 SO4 B 1 1211 1211 SO4 SO4 . 
M 2 SO4 B 1 1212 1212 SO4 SO4 . 
N 3 ACT B 1 1213 1213 ACT ACT . 
O 4 CL B 1 1214 1214 CL CL . 
P 5 S3G B 1 1215 1215 S3G S3G . 
Q 6 HOH A 1 2001 2001 HOH HOH . 
Q 6 HOH A 2 2002 2002 HOH HOH . 
Q 6 HOH A 3 2003 2003 HOH HOH . 
Q 6 HOH A 4 2004 2004 HOH HOH . 
Q 6 HOH A 5 2005 2005 HOH HOH . 
Q 6 HOH A 6 2006 2006 HOH HOH . 
Q 6 HOH A 7 2007 2007 HOH HOH . 
Q 6 HOH A 8 2008 2008 HOH HOH . 
Q 6 HOH A 9 2009 2009 HOH HOH . 
Q 6 HOH A 10 2010 2010 HOH HOH . 
Q 6 HOH A 11 2011 2011 HOH HOH . 
Q 6 HOH A 12 2012 2012 HOH HOH . 
Q 6 HOH A 13 2013 2013 HOH HOH . 
Q 6 HOH A 14 2014 2014 HOH HOH . 
Q 6 HOH A 15 2015 2015 HOH HOH . 
Q 6 HOH A 16 2016 2016 HOH HOH . 
Q 6 HOH A 17 2017 2017 HOH HOH . 
Q 6 HOH A 18 2018 2018 HOH HOH . 
Q 6 HOH A 19 2019 2019 HOH HOH . 
Q 6 HOH A 20 2020 2020 HOH HOH . 
Q 6 HOH A 21 2021 2021 HOH HOH . 
Q 6 HOH A 22 2022 2022 HOH HOH . 
Q 6 HOH A 23 2023 2023 HOH HOH . 
Q 6 HOH A 24 2024 2024 HOH HOH . 
Q 6 HOH A 25 2025 2025 HOH HOH . 
Q 6 HOH A 26 2026 2026 HOH HOH . 
Q 6 HOH A 27 2027 2027 HOH HOH . 
Q 6 HOH A 28 2028 2028 HOH HOH . 
Q 6 HOH A 29 2029 2029 HOH HOH . 
Q 6 HOH A 30 2030 2030 HOH HOH . 
Q 6 HOH A 31 2031 2031 HOH HOH . 
Q 6 HOH A 32 2032 2032 HOH HOH . 
Q 6 HOH A 33 2033 2033 HOH HOH . 
Q 6 HOH A 34 2034 2034 HOH HOH . 
Q 6 HOH A 35 2035 2035 HOH HOH . 
Q 6 HOH A 36 2036 2036 HOH HOH . 
Q 6 HOH A 37 2037 2037 HOH HOH . 
Q 6 HOH A 38 2038 2038 HOH HOH . 
Q 6 HOH A 39 2039 2039 HOH HOH . 
Q 6 HOH A 40 2040 2040 HOH HOH . 
Q 6 HOH A 41 2041 2041 HOH HOH . 
Q 6 HOH A 42 2042 2042 HOH HOH . 
Q 6 HOH A 43 2043 2043 HOH HOH . 
Q 6 HOH A 44 2044 2044 HOH HOH . 
Q 6 HOH A 45 2045 2045 HOH HOH . 
Q 6 HOH A 46 2046 2046 HOH HOH . 
Q 6 HOH A 47 2047 2047 HOH HOH . 
Q 6 HOH A 48 2048 2048 HOH HOH . 
Q 6 HOH A 49 2049 2049 HOH HOH . 
Q 6 HOH A 50 2050 2050 HOH HOH . 
Q 6 HOH A 51 2051 2051 HOH HOH . 
Q 6 HOH A 52 2052 2052 HOH HOH . 
Q 6 HOH A 53 2053 2053 HOH HOH . 
Q 6 HOH A 54 2054 2054 HOH HOH . 
Q 6 HOH A 55 2055 2055 HOH HOH . 
Q 6 HOH A 56 2056 2056 HOH HOH . 
Q 6 HOH A 57 2057 2057 HOH HOH . 
Q 6 HOH A 58 2058 2058 HOH HOH . 
Q 6 HOH A 59 2059 2059 HOH HOH . 
Q 6 HOH A 60 2060 2060 HOH HOH . 
Q 6 HOH A 61 2061 2061 HOH HOH . 
Q 6 HOH A 62 2062 2062 HOH HOH . 
Q 6 HOH A 63 2063 2063 HOH HOH . 
Q 6 HOH A 64 2064 2064 HOH HOH . 
Q 6 HOH A 65 2065 2065 HOH HOH . 
Q 6 HOH A 66 2066 2066 HOH HOH . 
Q 6 HOH A 67 2067 2067 HOH HOH . 
Q 6 HOH A 68 2068 2068 HOH HOH . 
Q 6 HOH A 69 2069 2069 HOH HOH . 
Q 6 HOH A 70 2070 2070 HOH HOH . 
Q 6 HOH A 71 2071 2071 HOH HOH . 
Q 6 HOH A 72 2072 2072 HOH HOH . 
Q 6 HOH A 73 2073 2073 HOH HOH . 
Q 6 HOH A 74 2074 2074 HOH HOH . 
Q 6 HOH A 75 2075 2075 HOH HOH . 
Q 6 HOH A 76 2076 2076 HOH HOH . 
Q 6 HOH A 77 2077 2077 HOH HOH . 
Q 6 HOH A 78 2078 2078 HOH HOH . 
Q 6 HOH A 79 2079 2079 HOH HOH . 
Q 6 HOH A 80 2080 2080 HOH HOH . 
Q 6 HOH A 81 2081 2081 HOH HOH . 
Q 6 HOH A 82 2082 2082 HOH HOH . 
Q 6 HOH A 83 2083 2083 HOH HOH . 
R 6 HOH B 1 2001 2001 HOH HOH . 
R 6 HOH B 2 2002 2002 HOH HOH . 
R 6 HOH B 3 2003 2003 HOH HOH . 
R 6 HOH B 4 2004 2004 HOH HOH . 
R 6 HOH B 5 2005 2005 HOH HOH . 
R 6 HOH B 6 2006 2006 HOH HOH . 
R 6 HOH B 7 2007 2007 HOH HOH . 
R 6 HOH B 8 2008 2008 HOH HOH . 
R 6 HOH B 9 2009 2009 HOH HOH . 
R 6 HOH B 10 2010 2010 HOH HOH . 
R 6 HOH B 11 2011 2011 HOH HOH . 
R 6 HOH B 12 2012 2012 HOH HOH . 
R 6 HOH B 13 2013 2013 HOH HOH . 
R 6 HOH B 14 2014 2014 HOH HOH . 
R 6 HOH B 15 2015 2015 HOH HOH . 
R 6 HOH B 16 2016 2016 HOH HOH . 
R 6 HOH B 17 2017 2017 HOH HOH . 
R 6 HOH B 18 2018 2018 HOH HOH . 
R 6 HOH B 19 2019 2019 HOH HOH . 
R 6 HOH B 20 2020 2020 HOH HOH . 
R 6 HOH B 21 2021 2021 HOH HOH . 
R 6 HOH B 22 2022 2022 HOH HOH . 
R 6 HOH B 23 2023 2023 HOH HOH . 
R 6 HOH B 24 2024 2024 HOH HOH . 
R 6 HOH B 25 2025 2025 HOH HOH . 
R 6 HOH B 26 2026 2026 HOH HOH . 
R 6 HOH B 27 2027 2027 HOH HOH . 
R 6 HOH B 28 2028 2028 HOH HOH . 
R 6 HOH B 29 2029 2029 HOH HOH . 
R 6 HOH B 30 2030 2030 HOH HOH . 
R 6 HOH B 31 2031 2031 HOH HOH . 
R 6 HOH B 32 2032 2032 HOH HOH . 
R 6 HOH B 33 2033 2033 HOH HOH . 
R 6 HOH B 34 2034 2034 HOH HOH . 
R 6 HOH B 35 2035 2035 HOH HOH . 
R 6 HOH B 36 2036 2036 HOH HOH . 
R 6 HOH B 37 2037 2037 HOH HOH . 
R 6 HOH B 38 2038 2038 HOH HOH . 
R 6 HOH B 39 2039 2039 HOH HOH . 
R 6 HOH B 40 2040 2040 HOH HOH . 
R 6 HOH B 41 2041 2041 HOH HOH . 
R 6 HOH B 42 2042 2042 HOH HOH . 
R 6 HOH B 43 2043 2043 HOH HOH . 
R 6 HOH B 44 2044 2044 HOH HOH . 
R 6 HOH B 45 2045 2045 HOH HOH . 
R 6 HOH B 46 2046 2046 HOH HOH . 
R 6 HOH B 47 2047 2047 HOH HOH . 
R 6 HOH B 48 2048 2048 HOH HOH . 
R 6 HOH B 49 2049 2049 HOH HOH . 
R 6 HOH B 50 2050 2050 HOH HOH . 
R 6 HOH B 51 2051 2051 HOH HOH . 
R 6 HOH B 52 2052 2052 HOH HOH . 
R 6 HOH B 53 2053 2053 HOH HOH . 
R 6 HOH B 54 2054 2054 HOH HOH . 
R 6 HOH B 55 2055 2055 HOH HOH . 
R 6 HOH B 56 2056 2056 HOH HOH . 
R 6 HOH B 57 2057 2057 HOH HOH . 
R 6 HOH B 58 2058 2058 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 S3G . . . P 5 -32.623 31.842 -11.419 1 24.08 ? C1 S3G 1215 B 1 
HETATM 2 C C2 S3G . . . P 5 -32.17 32.614 -10.372 1 24.31 ? C2 S3G 1215 B 1 
HETATM 3 C C3 S3G . . . P 5 -37.375 34.089 -16.392 1 44.35 ? C3 S3G 1215 B 1 
HETATM 4 C C4 S3G . . . P 5 -36.949 32.083 -17.603 1 42.97 ? C4 S3G 1215 B 1 
HETATM 5 C C5 S3G . . . P 5 -37.388 34.745 -17.604 1 45.02 ? C5 S3G 1215 B 1 
HETATM 6 C C6 S3G . . . P 5 -36.982 32.838 -18.753 1 44.42 ? C6 S3G 1215 B 1 
HETATM 7 C C7 S3G . . . P 5 -37.149 32.733 -16.409 1 41.61 ? C7 S3G 1215 B 1 
HETATM 8 C C8 S3G . . . P 5 -32.656 33.731 -12.914 1 24 ? C8 S3G 1215 B 1 
HETATM 9 C C9 S3G . . . P 5 -32.871 32.379 -12.675 1 23.86 ? C9 S3G 1215 B 1 
HETATM 10 C C10 S3G . . . P 5 -31.968 33.943 -10.624 1 24.42 ? C10 S3G 1215 B 1 
HETATM 11 C C11 S3G . . . P 5 -32.206 34.478 -11.852 1 24.4 ? C11 S3G 1215 B 1 
HETATM 12 C C12 S3G . . . P 5 -37.121 31.974 -15.156 1 38.04 ? C12 S3G 1215 B 1 
HETATM 13 C C13 S3G . . . P 5 -32.877 34.432 -14.213 1 23.24 ? C13 S3G 1215 B 1 
HETATM 14 C C14 S3G . . . P 5 -31.226 35.928 -10.639 1 26.42 ? C14 S3G 1215 B 1 
HETATM 15 C C15 S3G . . . P 5 -33.143 27.85 -13.447 1 28.26 ? C15 S3G 1215 B 1 
HETATM 16 C C16 S3G . . . P 5 -34.03 27.557 -15.75 1 30.05 ? C16 S3G 1215 B 1 
HETATM 17 C C17 S3G . . . P 5 -33.332 31.444 -13.746 1 25.61 ? C17 S3G 1215 B 1 
HETATM 18 C C18 S3G . . . P 5 -34.745 29.538 -14.458 1 28.21 ? C18 S3G 1215 B 1 
HETATM 19 C C19 S3G . . . P 5 -35.743 31.439 -13.206 1 30.95 ? C19 S3G 1215 B 1 
HETATM 20 C C20 S3G . . . P 5 -33.591 28.569 -14.706 1 28.35 ? C20 S3G 1215 B 1 
HETATM 21 C C21 S3G . . . P 5 -34.508 30.574 -13.371 1 27.71 ? C21 S3G 1215 B 1 
HETATM 22 N N22 S3G . . . P 5 -37.196 34.158 -18.79 1 45.19 ? N22 S3G 1215 B 1 
HETATM 23 N N23 S3G . . . P 5 -36.014 32.233 -14.381 1 31.79 ? N23 S3G 1215 B 1 
HETATM 24 O O24 S3G . . . P 5 -31.957 35.193 -14.634 1 21.28 ? O24 S3G 1215 B 1 
HETATM 25 O O25 S3G . . . P 5 -38.028 31.197 -14.901 1 37.81 ? O25 S3G 1215 B 1 
HETATM 26 O O26 S3G . . . P 5 -33.984 34.251 -14.792 1 23.3 ? O26 S3G 1215 B 1 
HETATM 27 O O27 S3G . . . P 5 -31.516 34.866 -9.731 1 25.36 ? O27 S3G 1215 B 1 
HETATM 28 O O28 S3G . . . P 5 -31.932 35.816 -11.884 1 26.18 ? O28 S3G 1215 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#