data_4CJ4 # _model_server_result.job_id jYQBH3qeDhQkeWk2X8nziQ _model_server_result.datetime_utc '2024-11-08 04:00:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1217}' # _entry.id 4CJ4 # _exptl.entry_id 4CJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.426 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(2S)-4-methyl-2-[(pyridin-4-ylcarbonylamino)methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CJ4 _cell.length_a 71.688 _cell.length_b 71.688 _cell.length_c 66.494 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 P N N # _chem_comp.formula 'C21 H24 N2 O5' _chem_comp.formula_weight 384.426 _chem_comp.id S3G _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(2S)-4-methyl-2-[(pyridin-4-ylcarbonylamino)methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S3G sing 283 n y C1 C9 S3G doub 284 n y C2 C10 S3G doub 285 n y C3 C5 S3G doub 286 n y C3 C7 S3G sing 287 n y C4 C6 S3G sing 288 n y C4 C7 S3G doub 289 n y C5 N22 S3G sing 290 n y C6 N22 S3G doub 291 n y C7 C12 S3G sing 292 n n C8 C9 S3G sing 293 n y C8 C11 S3G doub 294 n y C8 C13 S3G sing 295 n n C9 C17 S3G sing 296 n n C10 C11 S3G sing 297 n y C10 O27 S3G sing 298 n n C11 O28 S3G sing 299 n n C12 N23 S3G sing 300 n n C12 O25 S3G doub 301 n n C13 O24 S3G sing 302 n n C13 O26 S3G doub 303 n n C14 O27 S3G sing 304 n n C14 O28 S3G sing 305 n n C15 C20 S3G sing 306 n n C16 C20 S3G sing 307 n n C17 C21 S3G sing 308 n n C18 C20 S3G sing 309 n n C18 C21 S3G sing 310 n n C19 C21 S3G sing 311 n n C19 N23 S3G sing 312 n n C1 H1 S3G sing 313 n n C2 H2 S3G sing 314 n n C3 H3 S3G sing 315 n n C5 H5 S3G sing 316 n n C4 H4 S3G sing 317 n n C6 H6 S3G sing 318 n n C17 H171 S3G sing 319 n n C17 H172 S3G sing 320 n n N23 H23 S3G sing 321 n n O24 H24 S3G sing 322 n n C14 H141 S3G sing 323 n n C14 H142 S3G sing 324 n n C15 H151 S3G sing 325 n n C15 H152 S3G sing 326 n n C15 H153 S3G sing 327 n n C20 H20 S3G sing 328 n n C16 H161 S3G sing 329 n n C16 H162 S3G sing 330 n n C16 H163 S3G sing 331 n n C21 H21 S3G sing 332 n n C18 H181 S3G sing 333 n n C18 H182 S3G sing 334 n n C19 H191 S3G sing 335 n n C19 H192 S3G sing 336 n n # _atom_sites.entry_id 4CJ4 _atom_sites.fract_transf_matrix[1][1] 0.013949 _atom_sites.fract_transf_matrix[1][2] 0.008054 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 3 ACT A 1 1213 1213 ACT ACT . G 3 ACT A 1 1214 1214 ACT ACT . H 3 ACT A 1 1215 1215 ACT ACT . I 4 CL A 1 1216 1216 CL CL . J 5 S3G A 1 1217 1217 S3G S3G . K 2 SO4 B 1 1210 1210 SO4 SO4 . L 2 SO4 B 1 1211 1211 SO4 SO4 . M 2 SO4 B 1 1212 1212 SO4 SO4 . N 3 ACT B 1 1213 1213 ACT ACT . O 4 CL B 1 1214 1214 CL CL . P 5 S3G B 1 1215 1215 S3G S3G . Q 6 HOH A 1 2001 2001 HOH HOH . Q 6 HOH A 2 2002 2002 HOH HOH . Q 6 HOH A 3 2003 2003 HOH HOH . Q 6 HOH A 4 2004 2004 HOH HOH . Q 6 HOH A 5 2005 2005 HOH HOH . Q 6 HOH A 6 2006 2006 HOH HOH . Q 6 HOH A 7 2007 2007 HOH HOH . Q 6 HOH A 8 2008 2008 HOH HOH . Q 6 HOH A 9 2009 2009 HOH HOH . Q 6 HOH A 10 2010 2010 HOH HOH . Q 6 HOH A 11 2011 2011 HOH HOH . Q 6 HOH A 12 2012 2012 HOH HOH . Q 6 HOH A 13 2013 2013 HOH HOH . Q 6 HOH A 14 2014 2014 HOH HOH . Q 6 HOH A 15 2015 2015 HOH HOH . Q 6 HOH A 16 2016 2016 HOH HOH . Q 6 HOH A 17 2017 2017 HOH HOH . Q 6 HOH A 18 2018 2018 HOH HOH . Q 6 HOH A 19 2019 2019 HOH HOH . Q 6 HOH A 20 2020 2020 HOH HOH . Q 6 HOH A 21 2021 2021 HOH HOH . Q 6 HOH A 22 2022 2022 HOH HOH . Q 6 HOH A 23 2023 2023 HOH HOH . Q 6 HOH A 24 2024 2024 HOH HOH . Q 6 HOH A 25 2025 2025 HOH HOH . Q 6 HOH A 26 2026 2026 HOH HOH . Q 6 HOH A 27 2027 2027 HOH HOH . Q 6 HOH A 28 2028 2028 HOH HOH . Q 6 HOH A 29 2029 2029 HOH HOH . Q 6 HOH A 30 2030 2030 HOH HOH . Q 6 HOH A 31 2031 2031 HOH HOH . Q 6 HOH A 32 2032 2032 HOH HOH . Q 6 HOH A 33 2033 2033 HOH HOH . Q 6 HOH A 34 2034 2034 HOH HOH . Q 6 HOH A 35 2035 2035 HOH HOH . Q 6 HOH A 36 2036 2036 HOH HOH . Q 6 HOH A 37 2037 2037 HOH HOH . Q 6 HOH A 38 2038 2038 HOH HOH . Q 6 HOH A 39 2039 2039 HOH HOH . Q 6 HOH A 40 2040 2040 HOH HOH . Q 6 HOH A 41 2041 2041 HOH HOH . Q 6 HOH A 42 2042 2042 HOH HOH . Q 6 HOH A 43 2043 2043 HOH HOH . Q 6 HOH A 44 2044 2044 HOH HOH . Q 6 HOH A 45 2045 2045 HOH HOH . Q 6 HOH A 46 2046 2046 HOH HOH . Q 6 HOH A 47 2047 2047 HOH HOH . Q 6 HOH A 48 2048 2048 HOH HOH . Q 6 HOH A 49 2049 2049 HOH HOH . Q 6 HOH A 50 2050 2050 HOH HOH . Q 6 HOH A 51 2051 2051 HOH HOH . Q 6 HOH A 52 2052 2052 HOH HOH . Q 6 HOH A 53 2053 2053 HOH HOH . Q 6 HOH A 54 2054 2054 HOH HOH . Q 6 HOH A 55 2055 2055 HOH HOH . Q 6 HOH A 56 2056 2056 HOH HOH . Q 6 HOH A 57 2057 2057 HOH HOH . Q 6 HOH A 58 2058 2058 HOH HOH . Q 6 HOH A 59 2059 2059 HOH HOH . Q 6 HOH A 60 2060 2060 HOH HOH . Q 6 HOH A 61 2061 2061 HOH HOH . Q 6 HOH A 62 2062 2062 HOH HOH . Q 6 HOH A 63 2063 2063 HOH HOH . Q 6 HOH A 64 2064 2064 HOH HOH . Q 6 HOH A 65 2065 2065 HOH HOH . Q 6 HOH A 66 2066 2066 HOH HOH . Q 6 HOH A 67 2067 2067 HOH HOH . Q 6 HOH A 68 2068 2068 HOH HOH . Q 6 HOH A 69 2069 2069 HOH HOH . Q 6 HOH A 70 2070 2070 HOH HOH . Q 6 HOH A 71 2071 2071 HOH HOH . Q 6 HOH A 72 2072 2072 HOH HOH . Q 6 HOH A 73 2073 2073 HOH HOH . Q 6 HOH A 74 2074 2074 HOH HOH . Q 6 HOH A 75 2075 2075 HOH HOH . Q 6 HOH A 76 2076 2076 HOH HOH . Q 6 HOH A 77 2077 2077 HOH HOH . Q 6 HOH A 78 2078 2078 HOH HOH . Q 6 HOH A 79 2079 2079 HOH HOH . Q 6 HOH A 80 2080 2080 HOH HOH . Q 6 HOH A 81 2081 2081 HOH HOH . Q 6 HOH A 82 2082 2082 HOH HOH . Q 6 HOH A 83 2083 2083 HOH HOH . R 6 HOH B 1 2001 2001 HOH HOH . R 6 HOH B 2 2002 2002 HOH HOH . R 6 HOH B 3 2003 2003 HOH HOH . R 6 HOH B 4 2004 2004 HOH HOH . R 6 HOH B 5 2005 2005 HOH HOH . R 6 HOH B 6 2006 2006 HOH HOH . R 6 HOH B 7 2007 2007 HOH HOH . R 6 HOH B 8 2008 2008 HOH HOH . R 6 HOH B 9 2009 2009 HOH HOH . R 6 HOH B 10 2010 2010 HOH HOH . R 6 HOH B 11 2011 2011 HOH HOH . R 6 HOH B 12 2012 2012 HOH HOH . R 6 HOH B 13 2013 2013 HOH HOH . R 6 HOH B 14 2014 2014 HOH HOH . R 6 HOH B 15 2015 2015 HOH HOH . R 6 HOH B 16 2016 2016 HOH HOH . R 6 HOH B 17 2017 2017 HOH HOH . R 6 HOH B 18 2018 2018 HOH HOH . R 6 HOH B 19 2019 2019 HOH HOH . R 6 HOH B 20 2020 2020 HOH HOH . R 6 HOH B 21 2021 2021 HOH HOH . R 6 HOH B 22 2022 2022 HOH HOH . R 6 HOH B 23 2023 2023 HOH HOH . R 6 HOH B 24 2024 2024 HOH HOH . R 6 HOH B 25 2025 2025 HOH HOH . R 6 HOH B 26 2026 2026 HOH HOH . R 6 HOH B 27 2027 2027 HOH HOH . R 6 HOH B 28 2028 2028 HOH HOH . R 6 HOH B 29 2029 2029 HOH HOH . R 6 HOH B 30 2030 2030 HOH HOH . R 6 HOH B 31 2031 2031 HOH HOH . R 6 HOH B 32 2032 2032 HOH HOH . R 6 HOH B 33 2033 2033 HOH HOH . R 6 HOH B 34 2034 2034 HOH HOH . R 6 HOH B 35 2035 2035 HOH HOH . R 6 HOH B 36 2036 2036 HOH HOH . R 6 HOH B 37 2037 2037 HOH HOH . R 6 HOH B 38 2038 2038 HOH HOH . R 6 HOH B 39 2039 2039 HOH HOH . R 6 HOH B 40 2040 2040 HOH HOH . R 6 HOH B 41 2041 2041 HOH HOH . R 6 HOH B 42 2042 2042 HOH HOH . R 6 HOH B 43 2043 2043 HOH HOH . R 6 HOH B 44 2044 2044 HOH HOH . R 6 HOH B 45 2045 2045 HOH HOH . R 6 HOH B 46 2046 2046 HOH HOH . R 6 HOH B 47 2047 2047 HOH HOH . R 6 HOH B 48 2048 2048 HOH HOH . R 6 HOH B 49 2049 2049 HOH HOH . R 6 HOH B 50 2050 2050 HOH HOH . R 6 HOH B 51 2051 2051 HOH HOH . R 6 HOH B 52 2052 2052 HOH HOH . R 6 HOH B 53 2053 2053 HOH HOH . R 6 HOH B 54 2054 2054 HOH HOH . R 6 HOH B 55 2055 2055 HOH HOH . R 6 HOH B 56 2056 2056 HOH HOH . R 6 HOH B 57 2057 2057 HOH HOH . R 6 HOH B 58 2058 2058 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S3G . . . J 5 -11.258 44.217 -1.804 1 23.77 ? C1 S3G 1217 A 1 HETATM 2 C C2 S3G . . . J 5 -12.151 44.218 -2.854 1 23.52 ? C2 S3G 1217 A 1 HETATM 3 C C3 S3G . . . J 5 -10.867 49.476 3.129 1 45.05 ? C3 S3G 1217 A 1 HETATM 4 C C4 S3G . . . J 5 -9.359 48.084 4.337 1 44.18 ? C4 S3G 1217 A 1 HETATM 5 C C5 S3G . . . J 5 -11.434 49.809 4.34 1 46.19 ? C5 S3G 1217 A 1 HETATM 6 C C6 S3G . . . J 5 -10 48.485 5.487 1 45.97 ? C6 S3G 1217 A 1 HETATM 7 C C7 S3G . . . J 5 -9.812 48.596 3.145 1 42.17 ? C7 S3G 1217 A 1 HETATM 8 C C8 S3G . . . J 5 -12.889 45.158 -0.301 1 23.7 ? C8 S3G 1217 A 1 HETATM 9 C C9 S3G . . . J 5 -11.608 44.682 -0.543 1 23.8 ? C9 S3G 1217 A 1 HETATM 10 C C10 S3G . . . J 5 -13.408 44.694 -2.598 1 24.19 ? C10 S3G 1217 A 1 HETATM 11 C C11 S3G . . . J 5 -13.76 45.149 -1.364 1 24.1 ? C11 S3G 1217 A 1 HETATM 12 C C12 S3G . . . J 5 -9.167 48.203 1.893 1 38.41 ? C12 S3G 1217 A 1 HETATM 13 C C13 S3G . . . J 5 -13.38 45.678 1.01 1 24.23 ? C13 S3G 1217 A 1 HETATM 14 C C14 S3G . . . J 5 -15.502 45.045 -2.59 1 26.7 ? C14 S3G 1217 A 1 HETATM 15 C C15 S3G . . . J 5 -7.457 42.685 0.226 1 27.37 ? C15 S3G 1217 A 1 HETATM 16 C C16 S3G . . . J 5 -6.88 43.272 2.569 1 28.57 ? C16 S3G 1217 A 1 HETATM 17 C C17 S3G . . . J 5 -10.574 44.614 0.535 1 25.88 ? C17 S3G 1217 A 1 HETATM 18 C C18 S3G . . . J 5 -8.218 44.877 1.251 1 27.54 ? C18 S3G 1217 A 1 HETATM 19 C C19 S3G . . . J 5 -9.355 46.688 -0.021 1 30.71 ? C19 S3G 1217 A 1 HETATM 20 C C20 S3G . . . J 5 -7.933 43.392 1.48 1 27.35 ? C20 S3G 1217 A 1 HETATM 21 C C21 S3G . . . J 5 -9.231 45.187 0.16 1 27.37 ? C21 S3G 1217 A 1 HETATM 22 N N22 S3G . . . J 5 -11.031 49.336 5.525 1 46.95 ? N22 S3G 1217 A 1 HETATM 23 N N23 S3G . . . J 5 -9.921 47.332 1.14 1 31.87 ? N23 S3G 1217 A 1 HETATM 24 O O24 S3G . . . J 5 -14.482 45.235 1.436 1 22.15 ? O24 S3G 1217 A 1 HETATM 25 O O25 S3G . . . J 5 -8.065 48.655 1.619 1 37.55 ? O25 S3G 1217 A 1 HETATM 26 O O26 S3G . . . J 5 -12.675 46.554 1.589 1 23.54 ? O26 S3G 1217 A 1 HETATM 27 O O27 S3G . . . J 5 -14.431 44.768 -3.494 1 25.43 ? O27 S3G 1217 A 1 HETATM 28 O O28 S3G . . . J 5 -15.059 45.568 -1.331 1 26.73 ? O28 S3G 1217 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #