data_4CJF # _model_server_result.job_id vlSnZqkHcOhmDCohUUM_Fw _model_server_result.datetime_utc '2024-11-22 05:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1217}' # _entry.id 4CJF # _exptl.entry_id 4CJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.273 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(E)-(2-oxidanylidene-1H-indol-3-ylidene)methyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CJF _cell.length_a 71.498 _cell.length_b 71.498 _cell.length_c 66.607 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 R N N # _chem_comp.formula 'C17 H11 N O5' _chem_comp.formula_weight 309.273 _chem_comp.id RVN _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(E)-(2-oxidanylidene-1H-indol-3-ylidene)methyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 RVN doub 301 n n C2 N19 RVN sing 302 n n C2 C3 RVN sing 303 n n C4 C5 RVN sing 304 n n C4 C3 RVN doub 305 e n C5 C6 RVN sing 306 n y C5 C13 RVN doub 307 n y C6 C7 RVN doub 308 n y C7 C8 RVN sing 309 n y C8 O9 RVN sing 310 n n C8 C12 RVN doub 311 n y O9 C10 RVN sing 312 n n C10 O11 RVN sing 313 n n O11 C12 RVN sing 314 n n C12 C13 RVN sing 315 n y C13 C14 RVN sing 316 n n C14 O15 RVN doub 317 n n C14 O16 RVN sing 318 n n C17 C18 RVN sing 319 n y C17 C23 RVN doub 320 n y C17 C3 RVN sing 321 n n C18 N19 RVN sing 322 n n C18 C20 RVN doub 323 n y C20 C21 RVN sing 324 n y C21 C22 RVN doub 325 n y C22 C23 RVN sing 326 n y N19 H19 RVN sing 327 n n C4 H4 RVN sing 328 n n C6 H6 RVN sing 329 n n C7 H7 RVN sing 330 n n C10 H101 RVN sing 331 n n C10 H102 RVN sing 332 n n O16 H16 RVN sing 333 n n C23 H23 RVN sing 334 n n C20 H20 RVN sing 335 n n C21 H21 RVN sing 336 n n C22 H22 RVN sing 337 n n # _atom_sites.entry_id 4CJF _atom_sites.fract_transf_matrix[1][1] 0.013986 _atom_sites.fract_transf_matrix[1][2] 0.008075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 3 CL A 1 1212 1212 CL CL . F 4 DMS A 1 1213 1213 DMS DMS . G 5 ACT A 1 1214 1214 ACT ACT . H 5 ACT A 1 1215 1215 ACT ACT . I 5 ACT A 1 1216 1216 ACT ACT . J 6 RVN A 1 1217 1217 RVN RVN . K 2 SO4 B 1 1210 1210 SO4 SO4 . L 2 SO4 B 1 1211 1211 SO4 SO4 . M 4 DMS B 1 1212 1212 DMS DMS . N 5 ACT B 1 1213 1213 ACT ACT . O 7 EDO B 1 1214 1214 EDO EDO . P 5 ACT B 1 1215 1215 ACT ACT . Q 7 EDO B 1 1216 1216 EDO EDO . R 6 RVN B 1 1217 1217 RVN RVN . S 8 HOH A 1 2001 2001 HOH HOH . S 8 HOH A 2 2002 2002 HOH HOH . S 8 HOH A 3 2003 2003 HOH HOH . S 8 HOH A 4 2004 2004 HOH HOH . S 8 HOH A 5 2005 2005 HOH HOH . S 8 HOH A 6 2006 2006 HOH HOH . S 8 HOH A 7 2007 2007 HOH HOH . S 8 HOH A 8 2008 2008 HOH HOH . S 8 HOH A 9 2009 2009 HOH HOH . S 8 HOH A 10 2010 2010 HOH HOH . S 8 HOH A 11 2011 2011 HOH HOH . S 8 HOH A 12 2012 2012 HOH HOH . S 8 HOH A 13 2013 2013 HOH HOH . S 8 HOH A 14 2014 2014 HOH HOH . S 8 HOH A 15 2015 2015 HOH HOH . S 8 HOH A 16 2016 2016 HOH HOH . S 8 HOH A 17 2017 2017 HOH HOH . S 8 HOH A 18 2018 2018 HOH HOH . S 8 HOH A 19 2019 2019 HOH HOH . S 8 HOH A 20 2020 2020 HOH HOH . S 8 HOH A 21 2021 2021 HOH HOH . S 8 HOH A 22 2022 2022 HOH HOH . S 8 HOH A 23 2023 2023 HOH HOH . S 8 HOH A 24 2024 2024 HOH HOH . S 8 HOH A 25 2025 2025 HOH HOH . S 8 HOH A 26 2026 2026 HOH HOH . S 8 HOH A 27 2027 2027 HOH HOH . S 8 HOH A 28 2028 2028 HOH HOH . S 8 HOH A 29 2029 2029 HOH HOH . S 8 HOH A 30 2030 2030 HOH HOH . S 8 HOH A 31 2031 2031 HOH HOH . S 8 HOH A 32 2032 2032 HOH HOH . S 8 HOH A 33 2033 2033 HOH HOH . S 8 HOH A 34 2034 2034 HOH HOH . S 8 HOH A 35 2035 2035 HOH HOH . S 8 HOH A 36 2036 2036 HOH HOH . S 8 HOH A 37 2037 2037 HOH HOH . S 8 HOH A 38 2038 2038 HOH HOH . S 8 HOH A 39 2039 2039 HOH HOH . S 8 HOH A 40 2040 2040 HOH HOH . S 8 HOH A 41 2041 2041 HOH HOH . S 8 HOH A 42 2042 2042 HOH HOH . S 8 HOH A 43 2043 2043 HOH HOH . S 8 HOH A 44 2044 2044 HOH HOH . S 8 HOH A 45 2045 2045 HOH HOH . S 8 HOH A 46 2046 2046 HOH HOH . S 8 HOH A 47 2047 2047 HOH HOH . S 8 HOH A 48 2048 2048 HOH HOH . S 8 HOH A 49 2049 2049 HOH HOH . S 8 HOH A 50 2050 2050 HOH HOH . S 8 HOH A 51 2051 2051 HOH HOH . S 8 HOH A 52 2052 2052 HOH HOH . S 8 HOH A 53 2053 2053 HOH HOH . S 8 HOH A 54 2054 2054 HOH HOH . S 8 HOH A 55 2055 2055 HOH HOH . S 8 HOH A 56 2056 2056 HOH HOH . S 8 HOH A 57 2057 2057 HOH HOH . S 8 HOH A 58 2058 2058 HOH HOH . S 8 HOH A 59 2059 2059 HOH HOH . S 8 HOH A 60 2060 2060 HOH HOH . S 8 HOH A 61 2061 2061 HOH HOH . S 8 HOH A 62 2062 2062 HOH HOH . T 8 HOH B 1 2001 2001 HOH HOH . T 8 HOH B 2 2002 2002 HOH HOH . T 8 HOH B 3 2003 2003 HOH HOH . T 8 HOH B 4 2004 2004 HOH HOH . T 8 HOH B 5 2005 2005 HOH HOH . T 8 HOH B 6 2006 2006 HOH HOH . T 8 HOH B 7 2007 2007 HOH HOH . T 8 HOH B 8 2008 2008 HOH HOH . T 8 HOH B 9 2009 2009 HOH HOH . T 8 HOH B 10 2010 2010 HOH HOH . T 8 HOH B 11 2011 2011 HOH HOH . T 8 HOH B 12 2012 2012 HOH HOH . T 8 HOH B 13 2013 2013 HOH HOH . T 8 HOH B 14 2014 2014 HOH HOH . T 8 HOH B 15 2015 2015 HOH HOH . T 8 HOH B 16 2016 2016 HOH HOH . T 8 HOH B 17 2017 2017 HOH HOH . T 8 HOH B 18 2018 2018 HOH HOH . T 8 HOH B 19 2019 2019 HOH HOH . T 8 HOH B 20 2020 2020 HOH HOH . T 8 HOH B 21 2021 2021 HOH HOH . T 8 HOH B 22 2022 2022 HOH HOH . T 8 HOH B 23 2023 2023 HOH HOH . T 8 HOH B 24 2024 2024 HOH HOH . T 8 HOH B 25 2025 2025 HOH HOH . T 8 HOH B 26 2026 2026 HOH HOH . T 8 HOH B 27 2027 2027 HOH HOH . T 8 HOH B 28 2028 2028 HOH HOH . T 8 HOH B 29 2029 2029 HOH HOH . T 8 HOH B 30 2030 2030 HOH HOH . T 8 HOH B 31 2031 2031 HOH HOH . T 8 HOH B 32 2032 2032 HOH HOH . T 8 HOH B 33 2033 2033 HOH HOH . T 8 HOH B 34 2034 2034 HOH HOH . T 8 HOH B 35 2035 2035 HOH HOH . T 8 HOH B 36 2036 2036 HOH HOH . T 8 HOH B 37 2037 2037 HOH HOH . T 8 HOH B 38 2038 2038 HOH HOH . T 8 HOH B 39 2039 2039 HOH HOH . T 8 HOH B 40 2040 2040 HOH HOH . T 8 HOH B 41 2041 2041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 RVN . . . J 6 -35.936 30.416 -1.872 1 29.62 ? O1 RVN 1217 A 1 HETATM 2 C C2 RVN . . . J 6 -34.866 29.993 -1.458 1 27.53 ? C2 RVN 1217 A 1 HETATM 3 C C4 RVN . . . J 6 -34.186 31.978 -0.229 1 25.04 ? C4 RVN 1217 A 1 HETATM 4 C C5 RVN . . . J 6 -33.375 32.79 0.678 1 24.01 ? C5 RVN 1217 A 1 HETATM 5 C C6 RVN . . . J 6 -33.197 32.275 1.953 1 24 ? C6 RVN 1217 A 1 HETATM 6 C C7 RVN . . . J 6 -32.463 32.951 2.909 1 23.01 ? C7 RVN 1217 A 1 HETATM 7 C C8 RVN . . . J 6 -31.917 34.158 2.562 1 22.7 ? C8 RVN 1217 A 1 HETATM 8 O O9 RVN . . . J 6 -31.163 34.952 3.387 1 23.08 ? O9 RVN 1217 A 1 HETATM 9 C C10 RVN . . . J 6 -30.68 35.883 2.415 1 24.39 ? C10 RVN 1217 A 1 HETATM 10 O O11 RVN . . . J 6 -31.45 35.894 1.21 1 24.77 ? O11 RVN 1217 A 1 HETATM 11 C C12 RVN . . . J 6 -32.087 34.683 1.319 1 22.69 ? C12 RVN 1217 A 1 HETATM 12 C C13 RVN . . . J 6 -32.816 34.022 0.35 1 23.43 ? C13 RVN 1217 A 1 HETATM 13 C C14 RVN . . . J 6 -33 34.613 -0.995 1 23.81 ? C14 RVN 1217 A 1 HETATM 14 O O15 RVN . . . J 6 -34.036 34.536 -1.64 1 25.29 ? O15 RVN 1217 A 1 HETATM 15 O O16 RVN . . . J 6 -31.882 35.259 -1.41 1 22.21 ? O16 RVN 1217 A 1 HETATM 16 C C17 RVN . . . J 6 -32.841 29.789 -0.244 1 24.38 ? C17 RVN 1217 A 1 HETATM 17 C C18 RVN . . . J 6 -33.111 28.629 -0.912 1 26.1 ? C18 RVN 1217 A 1 HETATM 18 N N19 RVN . . . J 6 -34.291 28.756 -1.647 1 26.74 ? N19 RVN 1217 A 1 HETATM 19 C C20 RVN . . . J 6 -32.297 27.53 -0.834 1 25.15 ? C20 RVN 1217 A 1 HETATM 20 C C21 RVN . . . J 6 -31.169 27.62 -0.05 1 24.37 ? C21 RVN 1217 A 1 HETATM 21 C C22 RVN . . . J 6 -30.883 28.787 0.629 1 23.79 ? C22 RVN 1217 A 1 HETATM 22 C C23 RVN . . . J 6 -31.717 29.883 0.54 1 24.73 ? C23 RVN 1217 A 1 HETATM 23 C C3 RVN . . . J 6 -33.919 30.703 -0.569 1 24.7 ? C3 RVN 1217 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #