data_4CJL
#
_model_server_result.job_id            TMscb_SAXqAIYoj-mddVCg 
_model_server_result.datetime_utc      '2024-11-08 04:01:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cjl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1216}' 
#
_entry.id    4CJL 
#
_exptl.entry_id    4CJL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              378.463 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[(2S)-2-{[(5-aminopentanoyl)amino]methyl}-4-methylpentyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CJL 
_cell.length_a            72.028 
_cell.length_b            72.028 
_cell.length_c            66.46 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CJL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.306667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H30 N2 O5' 
_chem_comp.formula_weight    378.463 
_chem_comp.id                9PA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[(2S)-2-{[(5-aminopentanoyl)amino]methyl}-4-methylpentyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O1 9PA sing 1 n n 
O1 HO1 9PA sing 2 n n 
C4 C2 9PA sing 3 n n 
C2 O3 9PA doub 4 n n 
C5 C4 9PA doub 5 n y 
C12 C4 9PA sing 6 n y 
C9 C5 9PA sing 7 n y 
C5 O6 9PA sing 8 n n 
C7 O6 9PA sing 9 n n 
O8 C7 9PA sing 10 n n 
C7 H7 9PA sing 11 n n 
C7 H7A 9PA sing 12 n n 
O8 C9 9PA sing 13 n n 
C10 C9 9PA doub 14 n y 
C10 C11 9PA sing 15 n y 
C10 H10 9PA sing 16 n n 
C11 C12 9PA doub 17 n y 
C11 H11 9PA sing 18 n n 
C12 C13 9PA sing 19 n n 
C14 C13 9PA sing 20 n n 
C13 H13 9PA sing 21 n n 
C13 H13A 9PA sing 22 n n 
C15 C14 9PA sing 23 n n 
C14 C24 9PA sing 24 n n 
C14 H14 9PA sing 25 n n 
C15 N16 9PA sing 26 n n 
C15 H15 9PA sing 27 n n 
C15 H15A 9PA sing 28 n n 
N16 C17 9PA sing 29 n n 
N16 HN16 9PA sing 30 n n 
O18 C17 9PA doub 31 n n 
C17 C19 9PA sing 32 n n 
C19 C20 9PA sing 33 n n 
C19 H19 9PA sing 34 n n 
C19 H19A 9PA sing 35 n n 
C20 C21 9PA sing 36 n n 
C20 H20 9PA sing 37 n n 
C20 H20A 9PA sing 38 n n 
C21 C22 9PA sing 39 n n 
C21 H21 9PA sing 40 n n 
C21 H21A 9PA sing 41 n n 
C22 N23 9PA sing 42 n n 
C22 H22 9PA sing 43 n n 
C22 H22A 9PA sing 44 n n 
N23 HN23 9PA sing 45 n n 
N23 HN2A 9PA sing 46 n n 
C24 C25 9PA sing 47 n n 
C24 H24 9PA sing 48 n n 
C24 H24A 9PA sing 49 n n 
C26 C25 9PA sing 50 n n 
C25 C27 9PA sing 51 n n 
C25 H25 9PA sing 52 n n 
C26 H26 9PA sing 53 n n 
C26 H26A 9PA sing 54 n n 
C26 H26B 9PA sing 55 n n 
C27 H27 9PA sing 56 n n 
C27 H27A 9PA sing 57 n n 
C27 H27B 9PA sing 58 n n 
#
_atom_sites.entry_id                     4CJL 
_atom_sites.fract_transf_matrix[1][1]    0.013883 
_atom_sites.fract_transf_matrix[1][2]    0.008016 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016031 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015047 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1211 1211 SO4 SO4 . 
C 2 SO4 A 1 1212 1212 SO4 SO4 . 
D 2 SO4 A 1 1213 1213 SO4 SO4 . 
E 3 CL A 1 1214 1214 CL CL . 
F 4 ACT A 1 1215 1215 ACT ACT . 
G 5 9PA A 1 1216 1216 9PA 9PA . 
H 6 HOH A 1 2001 2001 HOH HOH . 
H 6 HOH A 2 2002 2002 HOH HOH . 
H 6 HOH A 3 2003 2003 HOH HOH . 
H 6 HOH A 4 2004 2004 HOH HOH . 
H 6 HOH A 5 2005 2005 HOH HOH . 
H 6 HOH A 6 2006 2006 HOH HOH . 
H 6 HOH A 7 2007 2007 HOH HOH . 
H 6 HOH A 8 2008 2008 HOH HOH . 
H 6 HOH A 9 2009 2009 HOH HOH . 
H 6 HOH A 10 2010 2010 HOH HOH . 
H 6 HOH A 11 2011 2011 HOH HOH . 
H 6 HOH A 12 2012 2012 HOH HOH . 
H 6 HOH A 13 2013 2013 HOH HOH . 
H 6 HOH A 14 2014 2014 HOH HOH . 
H 6 HOH A 15 2015 2015 HOH HOH . 
H 6 HOH A 16 2016 2016 HOH HOH . 
H 6 HOH A 17 2017 2017 HOH HOH . 
H 6 HOH A 18 2018 2018 HOH HOH . 
H 6 HOH A 19 2019 2019 HOH HOH . 
H 6 HOH A 20 2020 2020 HOH HOH . 
H 6 HOH A 21 2021 2021 HOH HOH . 
H 6 HOH A 22 2022 2022 HOH HOH . 
H 6 HOH A 23 2023 2023 HOH HOH . 
H 6 HOH A 24 2024 2024 HOH HOH . 
H 6 HOH A 25 2025 2025 HOH HOH . 
H 6 HOH A 26 2026 2026 HOH HOH . 
H 6 HOH A 27 2027 2027 HOH HOH . 
H 6 HOH A 28 2028 2028 HOH HOH . 
H 6 HOH A 29 2029 2029 HOH HOH . 
H 6 HOH A 30 2030 2030 HOH HOH . 
H 6 HOH A 31 2031 2031 HOH HOH . 
H 6 HOH A 32 2032 2032 HOH HOH . 
H 6 HOH A 33 2033 2033 HOH HOH . 
H 6 HOH A 34 2034 2034 HOH HOH . 
H 6 HOH A 35 2035 2035 HOH HOH . 
H 6 HOH A 36 2036 2036 HOH HOH . 
H 6 HOH A 37 2037 2037 HOH HOH . 
H 6 HOH A 38 2038 2038 HOH HOH . 
H 6 HOH A 39 2039 2039 HOH HOH . 
H 6 HOH A 40 2040 2040 HOH HOH . 
H 6 HOH A 41 2041 2041 HOH HOH . 
H 6 HOH A 42 2042 2042 HOH HOH . 
H 6 HOH A 43 2043 2043 HOH HOH . 
H 6 HOH A 44 2044 2044 HOH HOH . 
H 6 HOH A 45 2045 2045 HOH HOH . 
H 6 HOH A 46 2046 2046 HOH HOH . 
H 6 HOH A 47 2047 2047 HOH HOH . 
H 6 HOH A 48 2048 2048 HOH HOH . 
H 6 HOH A 49 2049 2049 HOH HOH . 
H 6 HOH A 50 2050 2050 HOH HOH . 
H 6 HOH A 51 2051 2051 HOH HOH . 
H 6 HOH A 52 2052 2052 HOH HOH . 
H 6 HOH A 53 2053 2053 HOH HOH . 
H 6 HOH A 54 2054 2054 HOH HOH . 
H 6 HOH A 55 2055 2055 HOH HOH . 
H 6 HOH A 56 2056 2056 HOH HOH . 
H 6 HOH A 57 2057 2057 HOH HOH . 
H 6 HOH A 58 2058 2058 HOH HOH . 
H 6 HOH A 59 2059 2059 HOH HOH . 
H 6 HOH A 60 2060 2060 HOH HOH . 
H 6 HOH A 61 2061 2061 HOH HOH . 
H 6 HOH A 62 2062 2062 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 9PA . . . G 5 -14.407 45.374 -14.147 1 23.89 ? O1 9PA 1216 A 1 
HETATM 2 C C2 9PA . . . G 5 -13.292 45.769 -14.581 1 26.04 ? C2 9PA 1216 A 1 
HETATM 3 O O3 9PA . . . G 5 -12.554 46.611 -13.999 1 27.31 ? O3 9PA 1216 A 1 
HETATM 4 C C4 9PA . . . G 5 -12.835 45.229 -15.896 1 26.03 ? C4 9PA 1216 A 1 
HETATM 5 C C5 9PA . . . G 5 -13.727 45.234 -16.945 1 27.5 ? C5 9PA 1216 A 1 
HETATM 6 O O6 9PA . . . G 5 -15.018 45.684 -16.9 1 31.31 ? O6 9PA 1216 A 1 
HETATM 7 C C7 9PA . . . G 5 -15.503 45.116 -18.122 1 31.75 ? C7 9PA 1216 A 1 
HETATM 8 O O8 9PA . . . G 5 -14.458 44.856 -19.059 1 30.68 ? O8 9PA 1216 A 1 
HETATM 9 C C9 9PA . . . G 5 -13.412 44.76 -18.181 1 28.37 ? C9 9PA 1216 A 1 
HETATM 10 C C10 9PA . . . G 5 -12.167 44.251 -18.451 1 27.06 ? C10 9PA 1216 A 1 
HETATM 11 C C11 9PA . . . G 5 -11.255 44.239 -17.417 1 26.05 ? C11 9PA 1216 A 1 
HETATM 12 C C12 9PA . . . G 5 -11.569 44.724 -16.152 1 25.15 ? C12 9PA 1216 A 1 
HETATM 13 C C13 9PA . . . G 5 -10.511 44.64 -15.093 1 25.47 ? C13 9PA 1216 A 1 
HETATM 14 C C14 9PA . . . G 5 -9.167 45.233 -15.449 1 27.46 ? C14 9PA 1216 A 1 
HETATM 15 C C15 9PA . . . G 5 -9.279 46.731 -15.655 1 29.54 ? C15 9PA 1216 A 1 
HETATM 16 N N16 9PA . . . G 5 -9.908 47.399 -14.536 1 30.74 ? N16 9PA 1216 A 1 
HETATM 17 C C17 9PA . . . G 5 -9.203 48.329 -13.803 1 34.76 ? C17 9PA 1216 A 1 
HETATM 18 O O18 9PA . . . G 5 -8.036 48.637 -13.999 1 33.72 ? O18 9PA 1216 A 1 
HETATM 19 C C19 9PA . . . G 5 -10.024 48.964 -12.721 1 36.55 ? C19 9PA 1216 A 1 
HETATM 20 C C20 9PA . . . G 5 -9.461 48.572 -11.376 1 38.6 ? C20 9PA 1216 A 1 
HETATM 21 C C21 9PA . . . G 5 -10.47 48.914 -10.304 1 41.51 ? C21 9PA 1216 A 1 
HETATM 22 C C22 9PA . . . G 5 -9.763 49.078 -8.979 1 46 ? C22 9PA 1216 A 1 
HETATM 23 N N23 9PA . . . G 5 -10.77 49.401 -7.934 1 47.2 ? N23 9PA 1216 A 1 
HETATM 24 C C24 9PA . . . G 5 -8.174 44.964 -14.329 1 27.44 ? C24 9PA 1216 A 1 
HETATM 25 C C25 9PA . . . G 5 -7.935 43.49 -14.015 1 28.24 ? C25 9PA 1216 A 1 
HETATM 26 C C26 9PA . . . G 5 -7.532 42.705 -15.251 1 28.74 ? C26 9PA 1216 A 1 
HETATM 27 C C27 9PA . . . G 5 -6.847 43.385 -12.957 1 29.17 ? C27 9PA 1216 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           27 
#