data_4CJP # _model_server_result.job_id 7JGRLwUWlrx3Tx68AErGNQ _model_server_result.datetime_utc '2024-11-09 01:20:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1215}' # _entry.id 4CJP # _exptl.entry_id 4CJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.426 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(2S)-4-methyl-2-[(pyridin-3-ylcarbonylamino)methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CJP _cell.length_a 71.21 _cell.length_b 71.21 _cell.length_c 67.019 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 M N N # _chem_comp.formula 'C21 H24 N2 O5' _chem_comp.formula_weight 384.426 _chem_comp.id 4D2 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(2S)-4-methyl-2-[(pyridin-3-ylcarbonylamino)methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 4D2 doub 1 n y C1 C5 4D2 sing 2 n y C2 C7 4D2 sing 3 n y C3 C4 4D2 sing 4 n y C3 C9 4D2 doub 5 n y C4 C10 4D2 doub 6 n y C5 N22 4D2 doub 7 n y C6 C7 4D2 doub 8 n y C6 N22 4D2 sing 9 n y C7 C12 4D2 sing 10 n n C8 C9 4D2 sing 11 n y C8 C11 4D2 doub 12 n y C8 C13 4D2 sing 13 n n C9 C17 4D2 sing 14 n n C10 C11 4D2 sing 15 n y C10 O27 4D2 sing 16 n n C11 O28 4D2 sing 17 n n C12 N23 4D2 sing 18 n n C12 O25 4D2 doub 19 n n C13 O24 4D2 sing 20 n n C13 O26 4D2 doub 21 n n C14 O27 4D2 sing 22 n n C14 O28 4D2 sing 23 n n C15 C20 4D2 sing 24 n n C16 C20 4D2 sing 25 n n C17 C21 4D2 sing 26 n n C18 C20 4D2 sing 27 n n C18 C21 4D2 sing 28 n n C19 C21 4D2 sing 29 n n C19 N23 4D2 sing 30 n n C1 H1 4D2 sing 31 n n C2 H2 4D2 sing 32 n n C5 H5 4D2 sing 33 n n C3 H3 4D2 sing 34 n n C4 H4 4D2 sing 35 n n C6 H6 4D2 sing 36 n n C17 H171 4D2 sing 37 n n C17 H172 4D2 sing 38 n n N23 H23 4D2 sing 39 n n O24 H24 4D2 sing 40 n n C14 H141 4D2 sing 41 n n C14 H142 4D2 sing 42 n n C15 H151 4D2 sing 43 n n C15 H152 4D2 sing 44 n n C15 H153 4D2 sing 45 n n C20 H20 4D2 sing 46 n n C16 H161 4D2 sing 47 n n C16 H162 4D2 sing 48 n n C16 H163 4D2 sing 49 n n C21 H21 4D2 sing 50 n n C18 H181 4D2 sing 51 n n C18 H182 4D2 sing 52 n n C19 H191 4D2 sing 53 n n C19 H192 4D2 sing 54 n n # _atom_sites.entry_id 4CJP _atom_sites.fract_transf_matrix[1][1] 0.014043 _atom_sites.fract_transf_matrix[1][2] 0.008108 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1210 1210 SO4 SO4 . D 2 SO4 A 1 1211 1211 SO4 SO4 . E 2 SO4 A 1 1212 1212 SO4 SO4 . F 2 SO4 A 1 1213 1213 SO4 SO4 . G 3 CL A 1 1214 1214 CL CL . H 4 4D2 A 1 1215 1215 4D2 4D2 . I 2 SO4 B 1 1210 1210 SO4 SO4 . J 2 SO4 B 1 1211 1211 SO4 SO4 . K 2 SO4 B 1 1212 1212 SO4 SO4 . L 3 CL B 1 1213 1213 CL CL . M 4 4D2 B 1 1214 1214 4D2 4D2 . N 5 HOH A 1 2001 2001 HOH HOH . N 5 HOH A 2 2002 2002 HOH HOH . N 5 HOH A 3 2003 2003 HOH HOH . N 5 HOH A 4 2004 2004 HOH HOH . N 5 HOH A 5 2005 2005 HOH HOH . N 5 HOH A 6 2006 2006 HOH HOH . N 5 HOH A 7 2007 2007 HOH HOH . N 5 HOH A 8 2008 2008 HOH HOH . N 5 HOH A 9 2009 2009 HOH HOH . N 5 HOH A 10 2010 2010 HOH HOH . N 5 HOH A 11 2011 2011 HOH HOH . N 5 HOH A 12 2012 2012 HOH HOH . N 5 HOH A 13 2013 2013 HOH HOH . N 5 HOH A 14 2014 2014 HOH HOH . N 5 HOH A 15 2015 2015 HOH HOH . N 5 HOH A 16 2016 2016 HOH HOH . N 5 HOH A 17 2017 2017 HOH HOH . N 5 HOH A 18 2018 2018 HOH HOH . N 5 HOH A 19 2019 2019 HOH HOH . N 5 HOH A 20 2020 2020 HOH HOH . N 5 HOH A 21 2021 2021 HOH HOH . N 5 HOH A 22 2022 2022 HOH HOH . N 5 HOH A 23 2023 2023 HOH HOH . N 5 HOH A 24 2024 2024 HOH HOH . N 5 HOH A 25 2025 2025 HOH HOH . N 5 HOH A 26 2026 2026 HOH HOH . N 5 HOH A 27 2027 2027 HOH HOH . N 5 HOH A 28 2028 2028 HOH HOH . N 5 HOH A 29 2029 2029 HOH HOH . N 5 HOH A 30 2030 2030 HOH HOH . N 5 HOH A 31 2031 2031 HOH HOH . N 5 HOH A 32 2032 2032 HOH HOH . N 5 HOH A 33 2033 2033 HOH HOH . N 5 HOH A 34 2034 2034 HOH HOH . N 5 HOH A 35 2035 2035 HOH HOH . N 5 HOH A 36 2036 2036 HOH HOH . N 5 HOH A 37 2037 2037 HOH HOH . N 5 HOH A 38 2038 2038 HOH HOH . N 5 HOH A 39 2039 2039 HOH HOH . N 5 HOH A 40 2040 2040 HOH HOH . N 5 HOH A 41 2041 2041 HOH HOH . N 5 HOH A 42 2042 2042 HOH HOH . N 5 HOH A 43 2043 2043 HOH HOH . N 5 HOH A 44 2044 2044 HOH HOH . N 5 HOH A 45 2045 2045 HOH HOH . N 5 HOH A 46 2046 2046 HOH HOH . N 5 HOH A 47 2047 2047 HOH HOH . N 5 HOH A 48 2048 2048 HOH HOH . N 5 HOH A 49 2049 2049 HOH HOH . N 5 HOH A 50 2050 2050 HOH HOH . N 5 HOH A 51 2051 2051 HOH HOH . N 5 HOH A 52 2052 2052 HOH HOH . N 5 HOH A 53 2053 2053 HOH HOH . O 5 HOH B 1 2001 2001 HOH HOH . O 5 HOH B 2 2002 2002 HOH HOH . O 5 HOH B 3 2003 2003 HOH HOH . O 5 HOH B 4 2004 2004 HOH HOH . O 5 HOH B 5 2005 2005 HOH HOH . O 5 HOH B 6 2006 2006 HOH HOH . O 5 HOH B 7 2007 2007 HOH HOH . O 5 HOH B 8 2008 2008 HOH HOH . O 5 HOH B 9 2009 2009 HOH HOH . O 5 HOH B 10 2010 2010 HOH HOH . O 5 HOH B 11 2011 2011 HOH HOH . O 5 HOH B 12 2012 2012 HOH HOH . O 5 HOH B 13 2013 2013 HOH HOH . O 5 HOH B 14 2014 2014 HOH HOH . O 5 HOH B 15 2015 2015 HOH HOH . O 5 HOH B 16 2016 2016 HOH HOH . O 5 HOH B 17 2017 2017 HOH HOH . O 5 HOH B 18 2018 2018 HOH HOH . O 5 HOH B 19 2019 2019 HOH HOH . O 5 HOH B 20 2020 2020 HOH HOH . O 5 HOH B 21 2021 2021 HOH HOH . O 5 HOH B 22 2022 2022 HOH HOH . O 5 HOH B 23 2023 2023 HOH HOH . O 5 HOH B 24 2024 2024 HOH HOH . O 5 HOH B 25 2025 2025 HOH HOH . O 5 HOH B 26 2026 2026 HOH HOH . O 5 HOH B 27 2027 2027 HOH HOH . O 5 HOH B 28 2028 2028 HOH HOH . O 5 HOH B 29 2029 2029 HOH HOH . O 5 HOH B 30 2030 2030 HOH HOH . O 5 HOH B 31 2031 2031 HOH HOH . O 5 HOH B 32 2032 2032 HOH HOH . O 5 HOH B 33 2033 2033 HOH HOH . O 5 HOH B 34 2034 2034 HOH HOH . O 5 HOH B 35 2035 2035 HOH HOH . O 5 HOH B 36 2036 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4D2 . . . H 4 -9.898 48.3 5.011 1 47.19 ? C1 4D2 1215 A 1 HETATM 2 C C2 4D2 . . . H 4 -9.276 47.87 3.861 1 46.46 ? C2 4D2 1215 A 1 HETATM 3 C C3 4D2 . . . H 4 -11.202 44.044 -2.305 1 25.79 ? C3 4D2 1215 A 1 HETATM 4 C C4 4D2 . . . H 4 -12.09 44.11 -3.354 1 26.88 ? C4 4D2 1215 A 1 HETATM 5 C C5 4D2 . . . H 4 -10.943 49.189 4.901 1 46.27 ? C5 4D2 1215 A 1 HETATM 6 C C6 4D2 . . . H 4 -10.788 49.244 2.645 1 46.55 ? C6 4D2 1215 A 1 HETATM 7 C C7 4D2 . . . H 4 -9.739 48.356 2.663 1 42.13 ? C7 4D2 1215 A 1 HETATM 8 C C8 4D2 . . . H 4 -12.798 44.981 -0.773 1 26.83 ? C8 4D2 1215 A 1 HETATM 9 C C9 4D2 . . . H 4 -11.53 44.472 -1.028 1 25.15 ? C9 4D2 1215 A 1 HETATM 10 C C10 4D2 . . . H 4 -13.333 44.614 -3.088 1 28.07 ? C10 4D2 1215 A 1 HETATM 11 C C11 4D2 . . . H 4 -13.67 45.034 -1.838 1 27.77 ? C11 4D2 1215 A 1 HETATM 12 C C12 4D2 . . . H 4 -9.099 47.924 1.418 1 38.71 ? C12 4D2 1215 A 1 HETATM 13 C C13 4D2 . . . H 4 -13.274 45.461 0.558 1 26.88 ? C13 4D2 1215 A 1 HETATM 14 C C14 4D2 . . . H 4 -15.414 44.973 -3.056 1 32.27 ? C14 4D2 1215 A 1 HETATM 15 C C15 4D2 . . . H 4 -7.447 42.43 -0.192 1 26.83 ? C15 4D2 1215 A 1 HETATM 16 C C16 4D2 . . . H 4 -6.762 43.07 2.072 1 29.67 ? C16 4D2 1215 A 1 HETATM 17 C C17 4D2 . . . H 4 -10.48 44.33 0.035 1 26.11 ? C17 4D2 1215 A 1 HETATM 18 C C18 4D2 . . . H 4 -8.123 44.653 0.779 1 27.15 ? C18 4D2 1215 A 1 HETATM 19 C C19 4D2 . . . H 4 -9.263 46.426 -0.502 1 29.64 ? C19 4D2 1215 A 1 HETATM 20 C C20 4D2 . . . H 4 -7.872 43.178 1.051 1 28.17 ? C20 4D2 1215 A 1 HETATM 21 C C21 4D2 . . . H 4 -9.132 44.928 -0.32 1 27.14 ? C21 4D2 1215 A 1 HETATM 22 N N22 4D2 . . . H 4 -11.408 49.678 3.748 1 47.61 ? N22 4D2 1215 A 1 HETATM 23 N N23 4D2 . . . H 4 -9.85 47.061 0.657 1 30.41 ? N23 4D2 1215 A 1 HETATM 24 O O24 4D2 . . . H 4 -14.388 45.033 0.968 1 25.73 ? O24 4D2 1215 A 1 HETATM 25 O O25 4D2 . . . H 4 -7.983 48.338 1.153 1 37.72 ? O25 4D2 1215 A 1 HETATM 26 O O26 4D2 . . . H 4 -12.548 46.278 1.181 1 25.45 ? O26 4D2 1215 A 1 HETATM 27 O O27 4D2 . . . H 4 -14.349 44.744 -3.994 1 30.69 ? O27 4D2 1215 A 1 HETATM 28 O O28 4D2 . . . H 4 -14.958 45.489 -1.793 1 30.31 ? O28 4D2 1215 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #