data_4CJQ
#
_model_server_result.job_id            o0m-_sKyHGIA3HZnLzQZQA 
_model_server_result.datetime_utc      '2024-11-25 03:20:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cjq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1214}' 
#
_entry.id    4CJQ 
#
_exptl.entry_id    4CJQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              436.5 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[(2S)-2-[[2-(1H-indol-3-yl)ethanoylamino]methyl]-4-methyl-pentyl]-1,3-benzodioxole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CJQ 
_cell.length_a            71.375 
_cell.length_b            71.375 
_cell.length_c            67.083 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CJQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 N N N 
#
_chem_comp.formula           'C25 H28 N2 O5' 
_chem_comp.formula_weight    436.5 
_chem_comp.id                VXO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[(2S)-2-[[2-(1H-indol-3-yl)ethanoylamino]methyl]-4-methyl-pentyl]-1,3-benzodioxole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 VXO sing 386 n y 
C1 C3 VXO doub 387 n y 
C2 C5 VXO doub 388 n y 
C3 C8 VXO sing 389 n y 
C4 C6 VXO sing 390 n y 
C4 C10 VXO doub 391 n y 
C5 C12 VXO sing 392 n y 
C6 C13 VXO doub 393 n y 
C7 C11 VXO doub 394 n y 
C7 N26 VXO sing 395 n y 
C8 C11 VXO sing 396 n y 
C8 C12 VXO doub 397 n y 
C9 C10 VXO sing 398 n y 
C9 C14 VXO doub 399 n y 
C9 C15 VXO sing 400 n n 
C10 C21 VXO sing 401 n n 
C11 C20 VXO sing 402 n n 
C12 N26 VXO sing 403 n y 
C13 C14 VXO sing 404 n y 
C13 O31 VXO sing 405 n n 
C14 O32 VXO sing 406 n n 
C15 O28 VXO doub 407 n n 
C15 O29 VXO sing 408 n n 
C16 C20 VXO sing 409 n n 
C16 N27 VXO sing 410 n n 
C16 O30 VXO doub 411 n n 
C17 O31 VXO sing 412 n n 
C17 O32 VXO sing 413 n n 
C18 C24 VXO sing 414 n n 
C19 C24 VXO sing 415 n n 
C21 C25 VXO sing 416 n n 
C22 C24 VXO sing 417 n n 
C22 C25 VXO sing 418 n n 
C23 C25 VXO sing 419 n n 
C23 N27 VXO sing 420 n n 
C1 H1 VXO sing 421 n n 
C2 H2 VXO sing 422 n n 
C3 H3 VXO sing 423 n n 
C5 H5 VXO sing 424 n n 
C4 H4 VXO sing 425 n n 
C6 H6 VXO sing 426 n n 
C7 H7 VXO sing 427 n n 
N26 H26 VXO sing 428 n n 
C21 H211 VXO sing 429 n n 
C21 H212 VXO sing 430 n n 
C20 H201 VXO sing 431 n n 
C20 H202 VXO sing 432 n n 
O29 H29 VXO sing 433 n n 
N27 H27 VXO sing 434 n n 
C17 H171 VXO sing 435 n n 
C17 H172 VXO sing 436 n n 
C18 H181 VXO sing 437 n n 
C18 H182 VXO sing 438 n n 
C18 H183 VXO sing 439 n n 
C24 H24 VXO sing 440 n n 
C19 H191 VXO sing 441 n n 
C19 H192 VXO sing 442 n n 
C19 H193 VXO sing 443 n n 
C25 H25 VXO sing 444 n n 
C22 H221 VXO sing 445 n n 
C22 H222 VXO sing 446 n n 
C23 H231 VXO sing 447 n n 
C23 H232 VXO sing 448 n n 
#
_atom_sites.entry_id                     4CJQ 
_atom_sites.fract_transf_matrix[1][1]    0.014011 
_atom_sites.fract_transf_matrix[1][2]    0.008089 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016178 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014907 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1210 1210 SO4 SO4 . 
D 2 SO4 A 1 1211 1211 SO4 SO4 . 
E 2 SO4 A 1 1212 1212 SO4 SO4 . 
F 3 ACT A 1 1213 1213 ACT ACT . 
G 4 VXO A 1 1214 1214 VXO VXO . 
H 2 SO4 B 1 1210 1210 SO4 SO4 . 
I 2 SO4 B 1 1211 1211 SO4 SO4 . 
J 2 SO4 B 1 1212 1212 SO4 SO4 . 
K 2 SO4 B 1 1213 1213 SO4 SO4 . 
L 3 ACT B 1 1214 1214 ACT ACT . 
M 3 ACT B 1 1215 1215 ACT ACT . 
N 4 VXO B 1 1216 1216 VXO VXO . 
O 5 HOH A 1 2001 2001 HOH HOH . 
O 5 HOH A 2 2002 2002 HOH HOH . 
O 5 HOH A 3 2003 2003 HOH HOH . 
O 5 HOH A 4 2004 2004 HOH HOH . 
O 5 HOH A 5 2005 2005 HOH HOH . 
O 5 HOH A 6 2006 2006 HOH HOH . 
O 5 HOH A 7 2007 2007 HOH HOH . 
O 5 HOH A 8 2008 2008 HOH HOH . 
O 5 HOH A 9 2009 2009 HOH HOH . 
O 5 HOH A 10 2010 2010 HOH HOH . 
O 5 HOH A 11 2011 2011 HOH HOH . 
O 5 HOH A 12 2012 2012 HOH HOH . 
O 5 HOH A 13 2013 2013 HOH HOH . 
O 5 HOH A 14 2014 2014 HOH HOH . 
O 5 HOH A 15 2015 2015 HOH HOH . 
O 5 HOH A 16 2016 2016 HOH HOH . 
O 5 HOH A 17 2017 2017 HOH HOH . 
O 5 HOH A 18 2018 2018 HOH HOH . 
O 5 HOH A 19 2019 2019 HOH HOH . 
O 5 HOH A 20 2020 2020 HOH HOH . 
O 5 HOH A 21 2021 2021 HOH HOH . 
O 5 HOH A 22 2022 2022 HOH HOH . 
O 5 HOH A 23 2023 2023 HOH HOH . 
O 5 HOH A 24 2024 2024 HOH HOH . 
O 5 HOH A 25 2025 2025 HOH HOH . 
O 5 HOH A 26 2026 2026 HOH HOH . 
O 5 HOH A 27 2027 2027 HOH HOH . 
O 5 HOH A 28 2028 2028 HOH HOH . 
O 5 HOH A 29 2029 2029 HOH HOH . 
O 5 HOH A 30 2030 2030 HOH HOH . 
O 5 HOH A 31 2031 2031 HOH HOH . 
O 5 HOH A 32 2032 2032 HOH HOH . 
O 5 HOH A 33 2033 2033 HOH HOH . 
O 5 HOH A 34 2034 2034 HOH HOH . 
O 5 HOH A 35 2035 2035 HOH HOH . 
O 5 HOH A 36 2036 2036 HOH HOH . 
O 5 HOH A 37 2037 2037 HOH HOH . 
O 5 HOH A 38 2038 2038 HOH HOH . 
O 5 HOH A 39 2039 2039 HOH HOH . 
O 5 HOH A 40 2040 2040 HOH HOH . 
O 5 HOH A 41 2041 2041 HOH HOH . 
O 5 HOH A 42 2042 2042 HOH HOH . 
O 5 HOH A 43 2043 2043 HOH HOH . 
O 5 HOH A 44 2044 2044 HOH HOH . 
O 5 HOH A 45 2045 2045 HOH HOH . 
O 5 HOH A 46 2046 2046 HOH HOH . 
O 5 HOH A 47 2047 2047 HOH HOH . 
O 5 HOH A 48 2048 2048 HOH HOH . 
O 5 HOH A 49 2049 2049 HOH HOH . 
O 5 HOH A 50 2050 2050 HOH HOH . 
O 5 HOH A 51 2051 2051 HOH HOH . 
O 5 HOH A 52 2052 2052 HOH HOH . 
O 5 HOH A 53 2053 2053 HOH HOH . 
O 5 HOH A 54 2054 2054 HOH HOH . 
O 5 HOH A 55 2055 2055 HOH HOH . 
O 5 HOH A 56 2056 2056 HOH HOH . 
O 5 HOH A 57 2057 2057 HOH HOH . 
O 5 HOH A 58 2058 2058 HOH HOH . 
O 5 HOH A 59 2059 2059 HOH HOH . 
O 5 HOH A 60 2060 2060 HOH HOH . 
O 5 HOH A 61 2061 2061 HOH HOH . 
O 5 HOH A 62 2062 2062 HOH HOH . 
O 5 HOH A 63 2063 2063 HOH HOH . 
O 5 HOH A 64 2064 2064 HOH HOH . 
O 5 HOH A 65 2065 2065 HOH HOH . 
O 5 HOH A 66 2066 2066 HOH HOH . 
O 5 HOH A 67 2067 2067 HOH HOH . 
O 5 HOH A 68 2068 2068 HOH HOH . 
O 5 HOH A 69 2069 2069 HOH HOH . 
O 5 HOH A 70 2070 2070 HOH HOH . 
O 5 HOH A 71 2071 2071 HOH HOH . 
O 5 HOH A 72 2072 2072 HOH HOH . 
O 5 HOH A 73 2073 2073 HOH HOH . 
O 5 HOH A 74 2074 2074 HOH HOH . 
O 5 HOH A 75 2075 2075 HOH HOH . 
O 5 HOH A 76 2076 2076 HOH HOH . 
O 5 HOH A 77 2077 2077 HOH HOH . 
O 5 HOH A 78 2078 2078 HOH HOH . 
O 5 HOH A 79 2079 2079 HOH HOH . 
O 5 HOH A 80 2080 2080 HOH HOH . 
O 5 HOH A 81 2081 2081 HOH HOH . 
O 5 HOH A 82 2082 2082 HOH HOH . 
O 5 HOH A 83 2083 2083 HOH HOH . 
O 5 HOH A 84 2084 2084 HOH HOH . 
O 5 HOH A 85 2085 2085 HOH HOH . 
O 5 HOH A 86 2086 2086 HOH HOH . 
O 5 HOH A 87 2087 2087 HOH HOH . 
P 5 HOH B 1 2001 2001 HOH HOH . 
P 5 HOH B 2 2002 2002 HOH HOH . 
P 5 HOH B 3 2003 2003 HOH HOH . 
P 5 HOH B 4 2004 2004 HOH HOH . 
P 5 HOH B 5 2005 2005 HOH HOH . 
P 5 HOH B 6 2006 2006 HOH HOH . 
P 5 HOH B 7 2007 2007 HOH HOH . 
P 5 HOH B 8 2008 2008 HOH HOH . 
P 5 HOH B 9 2009 2009 HOH HOH . 
P 5 HOH B 10 2010 2010 HOH HOH . 
P 5 HOH B 11 2011 2011 HOH HOH . 
P 5 HOH B 12 2012 2012 HOH HOH . 
P 5 HOH B 13 2013 2013 HOH HOH . 
P 5 HOH B 14 2014 2014 HOH HOH . 
P 5 HOH B 15 2015 2015 HOH HOH . 
P 5 HOH B 16 2016 2016 HOH HOH . 
P 5 HOH B 17 2017 2017 HOH HOH . 
P 5 HOH B 18 2018 2018 HOH HOH . 
P 5 HOH B 19 2019 2019 HOH HOH . 
P 5 HOH B 20 2020 2020 HOH HOH . 
P 5 HOH B 21 2021 2021 HOH HOH . 
P 5 HOH B 22 2022 2022 HOH HOH . 
P 5 HOH B 23 2023 2023 HOH HOH . 
P 5 HOH B 24 2024 2024 HOH HOH . 
P 5 HOH B 25 2025 2025 HOH HOH . 
P 5 HOH B 26 2026 2026 HOH HOH . 
P 5 HOH B 27 2027 2027 HOH HOH . 
P 5 HOH B 28 2028 2028 HOH HOH . 
P 5 HOH B 29 2029 2029 HOH HOH . 
P 5 HOH B 30 2030 2030 HOH HOH . 
P 5 HOH B 31 2031 2031 HOH HOH . 
P 5 HOH B 32 2032 2032 HOH HOH . 
P 5 HOH B 33 2033 2033 HOH HOH . 
P 5 HOH B 34 2034 2034 HOH HOH . 
P 5 HOH B 35 2035 2035 HOH HOH . 
P 5 HOH B 36 2036 2036 HOH HOH . 
P 5 HOH B 37 2037 2037 HOH HOH . 
P 5 HOH B 38 2038 2038 HOH HOH . 
P 5 HOH B 39 2039 2039 HOH HOH . 
P 5 HOH B 40 2040 2040 HOH HOH . 
P 5 HOH B 41 2041 2041 HOH HOH . 
P 5 HOH B 42 2042 2042 HOH HOH . 
P 5 HOH B 43 2043 2043 HOH HOH . 
P 5 HOH B 44 2044 2044 HOH HOH . 
P 5 HOH B 45 2045 2045 HOH HOH . 
P 5 HOH B 46 2046 2046 HOH HOH . 
P 5 HOH B 47 2047 2047 HOH HOH . 
P 5 HOH B 48 2048 2048 HOH HOH . 
P 5 HOH B 49 2049 2049 HOH HOH . 
P 5 HOH B 50 2050 2050 HOH HOH . 
P 5 HOH B 51 2051 2051 HOH HOH . 
P 5 HOH B 52 2052 2052 HOH HOH . 
P 5 HOH B 53 2053 2053 HOH HOH . 
P 5 HOH B 54 2054 2054 HOH HOH . 
P 5 HOH B 55 2055 2055 HOH HOH . 
P 5 HOH B 56 2056 2056 HOH HOH . 
P 5 HOH B 57 2057 2057 HOH HOH . 
P 5 HOH B 58 2058 2058 HOH HOH . 
P 5 HOH B 59 2059 2059 HOH HOH . 
P 5 HOH B 60 2060 2060 HOH HOH . 
P 5 HOH B 61 2061 2061 HOH HOH . 
P 5 HOH B 62 2062 2062 HOH HOH . 
P 5 HOH B 63 2063 2063 HOH HOH . 
P 5 HOH B 64 2064 2064 HOH HOH . 
P 5 HOH B 65 2065 2065 HOH HOH . 
P 5 HOH B 66 2066 2066 HOH HOH . 
P 5 HOH B 67 2067 2067 HOH HOH . 
P 5 HOH B 68 2068 2068 HOH HOH . 
P 5 HOH B 69 2069 2069 HOH HOH . 
P 5 HOH B 70 2070 2070 HOH HOH . 
P 5 HOH B 71 2071 2071 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 VXO . . . G 4 -12.012 48.949 6.709 1 44.12 ? C1 VXO 1214 A 1 
HETATM 2 C C2 VXO . . . G 4 -12.798 50.069 6.564 1 44.92 ? C2 VXO 1214 A 1 
HETATM 3 C C3 VXO . . . G 4 -11.201 48.499 5.691 1 43.58 ? C3 VXO 1214 A 1 
HETATM 4 C C4 VXO . . . G 4 -11.162 44.087 -2.397 1 22.4 ? C4 VXO 1214 A 1 
HETATM 5 C C5 VXO . . . G 4 -12.809 50.796 5.394 1 45.66 ? C5 VXO 1214 A 1 
HETATM 6 C C6 VXO . . . G 4 -12.068 44.106 -3.435 1 22.7 ? C6 VXO 1214 A 1 
HETATM 7 C C7 VXO . . . G 4 -10.897 50.066 2.451 1 44.11 ? C7 VXO 1214 A 1 
HETATM 8 C C8 VXO . . . G 4 -11.197 49.212 4.507 1 42.96 ? C8 VXO 1214 A 1 
HETATM 9 C C9 VXO . . . G 4 -12.777 44.985 -0.865 1 22.23 ? C9 VXO 1214 A 1 
HETATM 10 C C10 VXO . . . G 4 -11.493 44.524 -1.124 1 22.57 ? C10 VXO 1214 A 1 
HETATM 11 C C11 VXO . . . G 4 -10.502 49.04 3.282 1 41.77 ? C11 VXO 1214 A 1 
HETATM 12 C C12 VXO . . . G 4 -11.993 50.334 4.388 1 44.63 ? C12 VXO 1214 A 1 
HETATM 13 C C13 VXO . . . G 4 -13.326 44.57 -3.165 1 22.95 ? C13 VXO 1214 A 1 
HETATM 14 C C14 VXO . . . G 4 -13.661 44.997 -1.919 1 22.51 ? C14 VXO 1214 A 1 
HETATM 15 C C15 VXO . . . G 4 -13.253 45.477 0.453 1 22.52 ? C15 VXO 1214 A 1 
HETATM 16 C C16 VXO . . . G 4 -9.042 47.919 1.601 1 35.26 ? C16 VXO 1214 A 1 
HETATM 17 C C17 VXO . . . G 4 -15.425 44.919 -3.131 1 25.22 ? C17 VXO 1214 A 1 
HETATM 18 C C18 VXO . . . G 4 -7.424 42.51 -0.355 1 25.54 ? C18 VXO 1214 A 1 
HETATM 19 C C19 VXO . . . G 4 -6.751 43.159 1.952 1 27.23 ? C19 VXO 1214 A 1 
HETATM 20 C C20 VXO . . . G 4 -9.551 47.946 3.011 1 38.75 ? C20 VXO 1214 A 1 
HETATM 21 C C21 VXO . . . G 4 -10.431 44.43 -0.071 1 23.8 ? C21 VXO 1214 A 1 
HETATM 22 C C22 VXO . . . G 4 -8.048 44.765 0.61 1 25.67 ? C22 VXO 1214 A 1 
HETATM 23 C C23 VXO . . . G 4 -9.289 46.601 -0.464 1 27.13 ? C23 VXO 1214 A 1 
HETATM 24 C C24 VXO . . . G 4 -7.825 43.282 0.887 1 26.01 ? C24 VXO 1214 A 1 
HETATM 25 C C25 VXO . . . G 4 -9.114 45.093 -0.425 1 25.15 ? C25 VXO 1214 A 1 
HETATM 26 N N26 VXO . . . G 4 -11.796 50.838 3.132 1 44.7 ? N26 VXO 1214 A 1 
HETATM 27 N N27 VXO . . . G 4 -9.821 47.138 0.771 1 29.8 ? N27 VXO 1214 A 1 
HETATM 28 O O28 VXO . . . G 4 -14.378 45.077 0.864 1 21.17 ? O28 VXO 1214 A 1 
HETATM 29 O O29 VXO . . . G 4 -12.509 46.302 1.05 1 24.02 ? O29 VXO 1214 A 1 
HETATM 30 O O30 VXO . . . G 4 -8.03 48.52 1.275 1 36.1 ? O30 VXO 1214 A 1 
HETATM 31 O O31 VXO . . . G 4 -14.364 44.653 -4.054 1 24.21 ? O31 VXO 1214 A 1 
HETATM 32 O O32 VXO . . . G 4 -14.96 45.405 -1.864 1 24.46 ? O32 VXO 1214 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#