data_4CK0 # _model_server_result.job_id kA5WlPZGs3ezuKhKyDC0ow _model_server_result.datetime_utc '2024-11-28 13:49:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ck0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1121}' # _entry.id 4CK0 # _exptl.entry_id 4CK0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CK0 _cell.length_a 72.82 _cell.length_b 72.82 _cell.length_c 195.67 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CK0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OE2 GLU 37 C GLU 28 1_555 F ZN ZN . C ZN 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 C OE1 GLU 85 C GLU 76 1_555 F ZN ZN . C ZN 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc3 C OE2 GLU 85 C GLU 76 1_555 G ZN ZN . C ZN 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc4 F ZN ZN . C ZN 1120 1_555 H O1G ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 F ZN ZN . C ZN 1120 1_555 H PG ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc6 F ZN ZN . C ZN 1120 1_555 H O2G ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc7 F ZN ZN . C ZN 1120 1_555 H O1B ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc8 G ZN ZN . C ZN 1121 1_555 H O1A ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc9 G ZN ZN . C ZN 1121 1_555 H O1B ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 288 n n C10 C9 OLC doub 289 n n C10 C11 OLC sing 290 n n C9 C8 OLC sing 291 n n C17 C16 OLC sing 292 z n C11 C12 OLC sing 293 n n C8 C7 OLC sing 294 n n C24 C22 OLC sing 295 n n C24 O25 OLC sing 296 n n C16 C15 OLC sing 297 n n C12 C13 OLC sing 298 n n C7 C6 OLC sing 299 n n C15 C14 OLC sing 300 n n C13 C14 OLC sing 301 n n C6 C5 OLC sing 302 n n C5 C4 OLC sing 303 n n C4 C3 OLC sing 304 n n C3 C2 OLC sing 305 n n C2 C1 OLC sing 306 n n C21 C22 OLC sing 307 n n C21 O20 OLC sing 308 n n C1 O19 OLC doub 309 n n C1 O20 OLC sing 310 n n C22 O23 OLC sing 311 n n C18 H18 OLC sing 312 n n C18 H18A OLC sing 313 n n C18 H18B OLC sing 314 n n C10 H10 OLC sing 315 n n C9 H9 OLC sing 316 n n C17 H17 OLC sing 317 n n C17 H17A OLC sing 318 n n C11 H11 OLC sing 319 n n C11 H11A OLC sing 320 n n C8 H8 OLC sing 321 n n C8 H8A OLC sing 322 n n C24 H24 OLC sing 323 n n C24 H24A OLC sing 324 n n C16 H16 OLC sing 325 n n C16 H16A OLC sing 326 n n C12 H12 OLC sing 327 n n C12 H12A OLC sing 328 n n C7 H7 OLC sing 329 n n C7 H7A OLC sing 330 n n C15 H15 OLC sing 331 n n C15 H15A OLC sing 332 n n C13 H13 OLC sing 333 n n C13 H13A OLC sing 334 n n C6 H6 OLC sing 335 n n C6 H6A OLC sing 336 n n C14 H14 OLC sing 337 n n C14 H14A OLC sing 338 n n C5 H5 OLC sing 339 n n C5 H5A OLC sing 340 n n C4 H4 OLC sing 341 n n C4 H4A OLC sing 342 n n C3 H3 OLC sing 343 n n C3 H3A OLC sing 344 n n C2 H2 OLC sing 345 n n C2 H2A OLC sing 346 n n C21 H21 OLC sing 347 n n C21 H21A OLC sing 348 n n C22 H22 OLC sing 349 n n O25 HO25 OLC sing 350 n n O23 HO23 OLC sing 351 n n # _atom_sites.entry_id 4CK0 _atom_sites.fract_transf_matrix[1][1] 0.013732 _atom_sites.fract_transf_matrix[1][2] 0.007928 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC B 1 1121 1121 OLC OLC . E 2 OLC B 1 1122 1122 OLC OLC . F 3 ZN C 1 1120 1120 ZN ZN . G 3 ZN C 1 1121 1121 ZN ZN . H 4 ACP C 1 1122 1122 ACP ACP . I 5 HOH A 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . D 2 37.712 6.952 2.614 1 78.81 ? C18 OLC 1121 B 1 HETATM 2 C C10 OLC . . . D 2 33.955 6.95 -3.726 1 95.54 ? C10 OLC 1121 B 1 HETATM 3 C C9 OLC . . . D 2 32.672 6.977 -4.035 1 91.19 ? C9 OLC 1121 B 1 HETATM 4 C C17 OLC . . . D 2 38.469 6.497 1.389 1 87.46 ? C17 OLC 1121 B 1 HETATM 5 C C11 OLC . . . D 2 35.084 7.376 -4.614 1 99.53 ? C11 OLC 1121 B 1 HETATM 6 C C8 OLC . . . D 2 32.085 7.448 -5.334 1 97.21 ? C8 OLC 1121 B 1 HETATM 7 C C24 OLC . . . D 2 30.877 1.583 -16.033 1 91.15 ? C24 OLC 1121 B 1 HETATM 8 C C16 OLC . . . D 2 37.955 7.125 0.113 1 89.32 ? C16 OLC 1121 B 1 HETATM 9 C C12 OLC . . . D 2 36.289 7.961 -3.881 1 82.89 ? C12 OLC 1121 B 1 HETATM 10 C C7 OLC . . . D 2 31.241 6.397 -6.053 1 99.04 ? C7 OLC 1121 B 1 HETATM 11 C C15 OLC . . . D 2 38.77 6.787 -1.12 1 77.99 ? C15 OLC 1121 B 1 HETATM 12 C C13 OLC . . . D 2 36.91 7.041 -2.844 1 69.24 ? C13 OLC 1121 B 1 HETATM 13 C C6 OLC . . . D 2 30.676 6.859 -7.391 1 112.54 ? C6 OLC 1121 B 1 HETATM 14 C C14 OLC . . . D 2 38.285 7.485 -2.376 1 65.31 ? C14 OLC 1121 B 1 HETATM 15 C C5 OLC . . . D 2 29.963 5.769 -8.178 1 100.17 ? C5 OLC 1121 B 1 HETATM 16 C C4 OLC . . . D 2 29.56 6.18 -9.586 1 91.52 ? C4 OLC 1121 B 1 HETATM 17 C C3 OLC . . . D 2 29.08 5.029 -10.454 1 106.9 ? C3 OLC 1121 B 1 HETATM 18 C C2 OLC . . . D 2 28.799 5.445 -11.893 1 97.99 ? C2 OLC 1121 B 1 HETATM 19 C C21 OLC . . . D 2 29.448 2.734 -14.316 1 75.65 ? C21 OLC 1121 B 1 HETATM 20 C C1 OLC . . . D 2 28.493 4.284 -12.791 1 98.31 ? C1 OLC 1121 B 1 HETATM 21 C C22 OLC . . . D 2 30.837 2.56 -14.883 1 86.3 ? C22 OLC 1121 B 1 HETATM 22 O O19 OLC . . . D 2 27.399 3.824 -12.973 1 90.87 ? O19 OLC 1121 B 1 HETATM 23 O O25 OLC . . . D 2 32.194 1.467 -16.554 1 92.92 ? O25 OLC 1121 B 1 HETATM 24 O O23 OLC . . . D 2 31.339 3.831 -15.305 1 109.31 ? O23 OLC 1121 B 1 HETATM 25 O O20 OLC . . . D 2 29.6 3.822 -13.376 1 100.99 ? O20 OLC 1121 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #