data_4CK0
#
_model_server_result.job_id            fyfrWTYYoJSQnz8Pjqx3Pg 
_model_server_result.datetime_utc      '2024-12-01 05:43:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ck0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1122}' 
#
_entry.id    4CK0 
#
_exptl.entry_id    4CK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CK0 
_cell.length_a            72.82 
_cell.length_b            72.82 
_cell.length_c            195.67 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OE2 GLU 37 C GLU 28 1_555 F ZN ZN . C ZN 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc2 C OE1 GLU 85 C GLU 76 1_555 F ZN ZN . C ZN 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc3 C OE2 GLU 85 C GLU 76 1_555 G ZN ZN . C ZN 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc4 F ZN ZN . C ZN 1120 1_555 H O1G ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc5 F ZN ZN . C ZN 1120 1_555 H PG ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc6 F ZN ZN . C ZN 1120 1_555 H O2G ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc7 F ZN ZN . C ZN 1120 1_555 H O1B ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc8 G ZN ZN . C ZN 1121 1_555 H O1A ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc9 G ZN ZN . C ZN 1121 1_555 H O1B ACP . C ACP 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 1 n n 
PG O2G ACP sing 2 n n 
PG O3G ACP sing 3 n n 
PG C3B ACP sing 4 n n 
O2G HOG2 ACP sing 5 n n 
O3G HOG3 ACP sing 6 n n 
PB O1B ACP doub 7 n n 
PB O2B ACP sing 8 n n 
PB C3B ACP sing 9 n n 
PB O3A ACP sing 10 n n 
O2B HOB2 ACP sing 11 n n 
C3B H3B1 ACP sing 12 n n 
C3B H3B2 ACP sing 13 n n 
PA O1A ACP doub 14 n n 
PA O2A ACP sing 15 n n 
PA O3A ACP sing 16 n n 
PA O5' ACP sing 17 n n 
O2A HOA2 ACP sing 18 n n 
O5' C5' ACP sing 19 n n 
C5' C4' ACP sing 20 n n 
C5' "H5'1" ACP sing 21 n n 
C5' "H5'2" ACP sing 22 n n 
C4' O4' ACP sing 23 n n 
C4' C3' ACP sing 24 n n 
C4' H4' ACP sing 25 n n 
O4' C1' ACP sing 26 n n 
C3' O3' ACP sing 27 n n 
C3' C2' ACP sing 28 n n 
C3' H3' ACP sing 29 n n 
O3' HO3' ACP sing 30 n n 
C2' O2' ACP sing 31 n n 
C2' C1' ACP sing 32 n n 
C2' H2' ACP sing 33 n n 
O2' HO2' ACP sing 34 n n 
C1' N9 ACP sing 35 n n 
C1' H1' ACP sing 36 n n 
N9 C8 ACP sing 37 n y 
N9 C4 ACP sing 38 n y 
C8 N7 ACP doub 39 n y 
C8 H8 ACP sing 40 n n 
N7 C5 ACP sing 41 n y 
C5 C6 ACP sing 42 n y 
C5 C4 ACP doub 43 n y 
C6 N6 ACP sing 44 n n 
C6 N1 ACP doub 45 n y 
N6 HN61 ACP sing 46 n n 
N6 HN62 ACP sing 47 n n 
N1 C2 ACP sing 48 n y 
C2 N3 ACP doub 49 n y 
C2 H2 ACP sing 50 n n 
N3 C4 ACP sing 51 n y 
#
_atom_sites.entry_id                     4CK0 
_atom_sites.fract_transf_matrix[1][1]    0.013732 
_atom_sites.fract_transf_matrix[1][2]    0.007928 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 OLC B 1 1121 1121 OLC OLC . 
E 2 OLC B 1 1122 1122 OLC OLC . 
F 3 ZN C 1 1120 1120 ZN ZN . 
G 3 ZN C 1 1121 1121 ZN ZN . 
H 4 ACP C 1 1122 1122 ACP ACP . 
I 5 HOH A 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . H 4 43.849 -21.246 -23.084 0.7 153.06 ? PG ACP 1122 C 1 
HETATM 2 O O1G ACP . . . H 4 42.642 -20.997 -23.933 0.7 134.86 ? O1G ACP 1122 C 1 
HETATM 3 O O2G ACP . . . H 4 43.658 -20.773 -21.624 0.7 157.02 ? O2G ACP 1122 C 1 
HETATM 4 O O3G ACP . . . H 4 44.25 -22.738 -23.035 0.7 146.87 ? O3G ACP 1122 C 1 
HETATM 5 P PB ACP . . . H 4 45.331 -18.583 -23.33 0.7 136.67 ? PB ACP 1122 C 1 
HETATM 6 O O1B ACP . . . H 4 44.21 -17.993 -22.483 0.7 130.15 ? O1B ACP 1122 C 1 
HETATM 7 O O2B ACP . . . H 4 46.684 -18.437 -22.576 0.7 125.4 ? O2B ACP 1122 C 1 
HETATM 8 C C3B ACP . . . H 4 45.277 -20.343 -23.695 0.7 136.67 ? C3B ACP 1122 C 1 
HETATM 9 P PA ACP . . . H 4 44.709 -16.724 -25.428 0.7 97.64 ? PA ACP 1122 C 1 
HETATM 10 O O1A ACP . . . H 4 44.708 -15.618 -24.358 0.7 113.26 ? O1A ACP 1122 C 1 
HETATM 11 O O2A ACP . . . H 4 43.377 -17.131 -25.932 0.7 87.43 ? O2A ACP 1122 C 1 
HETATM 12 O O3A ACP . . . H 4 45.565 -17.876 -24.736 0.7 123.08 ? O3A ACP 1122 C 1 
HETATM 13 O O5' ACP . . . H 4 45.708 -16.275 -26.573 0.7 96.61 ? O5' ACP 1122 C 1 
HETATM 14 C C5' ACP . . . H 4 47.071 -16.017 -26.179 0.7 102.68 ? C5' ACP 1122 C 1 
HETATM 15 C C4' ACP . . . H 4 47.401 -14.577 -26.478 0.7 98.44 ? C4' ACP 1122 C 1 
HETATM 16 O O4' ACP . . . H 4 47.611 -14.412 -27.897 0.7 106.26 ? O4' ACP 1122 C 1 
HETATM 17 C C3' ACP . . . H 4 46.318 -13.567 -26.112 0.7 98.67 ? C3' ACP 1122 C 1 
HETATM 18 O O3' ACP . . . H 4 46.443 -13.148 -24.758 0.7 103.22 ? O3' ACP 1122 C 1 
HETATM 19 C C2' ACP . . . H 4 46.59 -12.432 -27.097 0.7 86.67 ? C2' ACP 1122 C 1 
HETATM 20 O O2' ACP . . . H 4 47.653 -11.599 -26.651 0.7 85.35 ? O2' ACP 1122 C 1 
HETATM 21 C C1' ACP . . . H 4 46.995 -13.218 -28.347 0.7 91.55 ? C1' ACP 1122 C 1 
HETATM 22 N N9 ACP . . . H 4 45.878 -13.578 -29.215 0.7 87.78 ? N9 ACP 1122 C 1 
HETATM 23 C C8 ACP . . . H 4 45.155 -14.742 -29.19 0.7 84.42 ? C8 ACP 1122 C 1 
HETATM 24 N N7 ACP . . . H 4 44.209 -14.802 -30.096 0.7 85.67 ? N7 ACP 1122 C 1 
HETATM 25 C C5 ACP . . . H 4 44.317 -13.591 -30.765 0.7 81.87 ? C5 ACP 1122 C 1 
HETATM 26 C C6 ACP . . . H 4 43.6 -13.036 -31.842 0.7 81.3 ? C6 ACP 1122 C 1 
HETATM 27 N N6 ACP . . . H 4 42.589 -13.652 -32.459 0.7 84.12 ? N6 ACP 1122 C 1 
HETATM 28 N N1 ACP . . . H 4 43.965 -11.806 -32.27 0.7 83.73 ? N1 ACP 1122 C 1 
HETATM 29 C C2 ACP . . . H 4 44.976 -11.185 -31.656 0.7 82 ? C2 ACP 1122 C 1 
HETATM 30 N N3 ACP . . . H 4 45.723 -11.609 -30.633 0.7 76.54 ? N3 ACP 1122 C 1 
HETATM 31 C C4 ACP . . . H 4 45.341 -12.828 -30.231 0.7 83.82 ? C4 ACP 1122 C 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#