data_4CK3 # _model_server_result.job_id JUu9IbIHSl41mVXd2uViNw _model_server_result.datetime_utc '2024-11-22 07:10:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ck3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1216}' # _entry.id 4CK3 # _exptl.entry_id 4CK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.436 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(2S)-2-{[(4-aminobutanoyl)amino]methyl}-4-methylpentyl]-1,3-benzodioxole-4-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CK3 _cell.length_a 71.58 _cell.length_b 71.58 _cell.length_c 66.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 O N N # _chem_comp.formula 'C19 H28 N2 O5' _chem_comp.formula_weight 364.436 _chem_comp.id K1T _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(2S)-2-{[(4-aminobutanoyl)amino]methyl}-4-methylpentyl]-1,3-benzodioxole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 K1T sing 179 n n C1 H1 K1T sing 180 n n C1 H1A K1T sing 181 n n C1 H1B K1T sing 182 n n C4 C2 K1T sing 183 n n C2 C3 K1T sing 184 n n C2 H2 K1T sing 185 n n C3 H3 K1T sing 186 n n C3 H3A K1T sing 187 n n C3 H3B K1T sing 188 n n C5 C4 K1T sing 189 n n C4 H4 K1T sing 190 n n C4 H4A K1T sing 191 n n C20 C5 K1T sing 192 n n C5 C7 K1T sing 193 n n C5 H5 K1T sing 194 n n C8 C7 K1T sing 195 n n C7 H7 K1T sing 196 n n C7 H7A K1T sing 197 n n C13 C8 K1T doub 198 n y C8 C9 K1T sing 199 n y C10 C9 K1T doub 200 n y C9 C17 K1T sing 201 n n C11 C10 K1T sing 202 n y C10 O16 K1T sing 203 n n O14 C11 K1T sing 204 n n C12 C11 K1T doub 205 n y C12 C13 K1T sing 206 n y C12 H12 K1T sing 207 n n C13 H13 K1T sing 208 n n O14 C15 K1T sing 209 n n C15 O16 K1T sing 210 n n C15 H15 K1T sing 211 n n C15 H15A K1T sing 212 n n C17 O19 K1T doub 213 n n C17 O18 K1T sing 214 n n O18 HO18 K1T sing 215 n n C20 N21 K1T sing 216 n n C20 H20 K1T sing 217 n n C20 H20A K1T sing 218 n n N21 C22 K1T sing 219 n n N21 HN21 K1T sing 220 n n O23 C22 K1T doub 221 n n C22 C24 K1T sing 222 n n C24 C25 K1T sing 223 n n C24 H24 K1T sing 224 n n C24 H24A K1T sing 225 n n C25 C26 K1T sing 226 n n C25 H25 K1T sing 227 n n C25 H25A K1T sing 228 n n C26 N27 K1T sing 229 n n C26 H26 K1T sing 230 n n C26 H26A K1T sing 231 n n N27 HN27 K1T sing 232 n n N27 HN2A K1T sing 233 n n # _atom_sites.entry_id 4CK3 _atom_sites.fract_transf_matrix[1][1] 0.01397 _atom_sites.fract_transf_matrix[1][2] 0.008066 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1209 1209 SO4 SO4 . D 2 SO4 A 1 1210 1210 SO4 SO4 . E 2 SO4 A 1 1211 1211 SO4 SO4 . F 3 ACT A 1 1212 1212 ACT ACT . G 4 K1T A 1 1213 1213 K1T K1T . H 2 SO4 B 1 1209 1209 SO4 SO4 . I 2 SO4 B 1 1210 1210 SO4 SO4 . J 2 SO4 B 1 1211 1211 SO4 SO4 . K 2 SO4 B 1 1212 1212 SO4 SO4 . L 3 ACT B 1 1213 1213 ACT ACT . M 3 ACT B 1 1214 1214 ACT ACT . N 3 ACT B 1 1215 1215 ACT ACT . O 4 K1T B 1 1216 1216 K1T K1T . P 5 HOH A 1 2001 2001 HOH HOH . P 5 HOH A 2 2002 2002 HOH HOH . P 5 HOH A 3 2003 2003 HOH HOH . P 5 HOH A 4 2004 2004 HOH HOH . P 5 HOH A 5 2005 2005 HOH HOH . P 5 HOH A 6 2006 2006 HOH HOH . P 5 HOH A 7 2007 2007 HOH HOH . P 5 HOH A 8 2008 2008 HOH HOH . P 5 HOH A 9 2009 2009 HOH HOH . P 5 HOH A 10 2010 2010 HOH HOH . P 5 HOH A 11 2011 2011 HOH HOH . P 5 HOH A 12 2012 2012 HOH HOH . P 5 HOH A 13 2013 2013 HOH HOH . P 5 HOH A 14 2014 2014 HOH HOH . P 5 HOH A 15 2015 2015 HOH HOH . P 5 HOH A 16 2016 2016 HOH HOH . P 5 HOH A 17 2017 2017 HOH HOH . P 5 HOH A 18 2018 2018 HOH HOH . P 5 HOH A 19 2019 2019 HOH HOH . P 5 HOH A 20 2020 2020 HOH HOH . P 5 HOH A 21 2021 2021 HOH HOH . P 5 HOH A 22 2022 2022 HOH HOH . P 5 HOH A 23 2023 2023 HOH HOH . P 5 HOH A 24 2024 2024 HOH HOH . P 5 HOH A 25 2025 2025 HOH HOH . P 5 HOH A 26 2026 2026 HOH HOH . P 5 HOH A 27 2027 2027 HOH HOH . P 5 HOH A 28 2028 2028 HOH HOH . P 5 HOH A 29 2029 2029 HOH HOH . P 5 HOH A 30 2030 2030 HOH HOH . P 5 HOH A 31 2031 2031 HOH HOH . P 5 HOH A 32 2032 2032 HOH HOH . P 5 HOH A 33 2033 2033 HOH HOH . P 5 HOH A 34 2034 2034 HOH HOH . P 5 HOH A 35 2035 2035 HOH HOH . P 5 HOH A 36 2036 2036 HOH HOH . P 5 HOH A 37 2037 2037 HOH HOH . P 5 HOH A 38 2038 2038 HOH HOH . P 5 HOH A 39 2039 2039 HOH HOH . P 5 HOH A 40 2040 2040 HOH HOH . P 5 HOH A 41 2041 2041 HOH HOH . P 5 HOH A 42 2042 2042 HOH HOH . P 5 HOH A 43 2043 2043 HOH HOH . P 5 HOH A 44 2044 2044 HOH HOH . P 5 HOH A 45 2045 2045 HOH HOH . P 5 HOH A 46 2046 2046 HOH HOH . P 5 HOH A 47 2047 2047 HOH HOH . P 5 HOH A 48 2048 2048 HOH HOH . P 5 HOH A 49 2049 2049 HOH HOH . P 5 HOH A 50 2050 2050 HOH HOH . P 5 HOH A 51 2051 2051 HOH HOH . P 5 HOH A 52 2052 2052 HOH HOH . P 5 HOH A 53 2053 2053 HOH HOH . P 5 HOH A 54 2054 2054 HOH HOH . P 5 HOH A 55 2055 2055 HOH HOH . P 5 HOH A 56 2056 2056 HOH HOH . P 5 HOH A 57 2057 2057 HOH HOH . P 5 HOH A 58 2058 2058 HOH HOH . P 5 HOH A 59 2059 2059 HOH HOH . P 5 HOH A 60 2060 2060 HOH HOH . P 5 HOH A 61 2061 2061 HOH HOH . P 5 HOH A 62 2062 2062 HOH HOH . P 5 HOH A 63 2063 2063 HOH HOH . P 5 HOH A 64 2064 2064 HOH HOH . P 5 HOH A 65 2065 2065 HOH HOH . P 5 HOH A 66 2066 2066 HOH HOH . P 5 HOH A 67 2067 2067 HOH HOH . P 5 HOH A 68 2068 2068 HOH HOH . P 5 HOH A 69 2069 2069 HOH HOH . Q 5 HOH B 1 2001 2001 HOH HOH . Q 5 HOH B 2 2002 2002 HOH HOH . Q 5 HOH B 3 2003 2003 HOH HOH . Q 5 HOH B 4 2004 2004 HOH HOH . Q 5 HOH B 5 2005 2005 HOH HOH . Q 5 HOH B 6 2006 2006 HOH HOH . Q 5 HOH B 7 2007 2007 HOH HOH . Q 5 HOH B 8 2008 2008 HOH HOH . Q 5 HOH B 9 2009 2009 HOH HOH . Q 5 HOH B 10 2010 2010 HOH HOH . Q 5 HOH B 11 2011 2011 HOH HOH . Q 5 HOH B 12 2012 2012 HOH HOH . Q 5 HOH B 13 2013 2013 HOH HOH . Q 5 HOH B 14 2014 2014 HOH HOH . Q 5 HOH B 15 2015 2015 HOH HOH . Q 5 HOH B 16 2016 2016 HOH HOH . Q 5 HOH B 17 2017 2017 HOH HOH . Q 5 HOH B 18 2018 2018 HOH HOH . Q 5 HOH B 19 2019 2019 HOH HOH . Q 5 HOH B 20 2020 2020 HOH HOH . Q 5 HOH B 21 2021 2021 HOH HOH . Q 5 HOH B 22 2022 2022 HOH HOH . Q 5 HOH B 23 2023 2023 HOH HOH . Q 5 HOH B 24 2024 2024 HOH HOH . Q 5 HOH B 25 2025 2025 HOH HOH . Q 5 HOH B 26 2026 2026 HOH HOH . Q 5 HOH B 27 2027 2027 HOH HOH . Q 5 HOH B 28 2028 2028 HOH HOH . Q 5 HOH B 29 2029 2029 HOH HOH . Q 5 HOH B 30 2030 2030 HOH HOH . Q 5 HOH B 31 2031 2031 HOH HOH . Q 5 HOH B 32 2032 2032 HOH HOH . Q 5 HOH B 33 2033 2033 HOH HOH . Q 5 HOH B 34 2034 2034 HOH HOH . Q 5 HOH B 35 2035 2035 HOH HOH . Q 5 HOH B 36 2036 2036 HOH HOH . Q 5 HOH B 37 2037 2037 HOH HOH . Q 5 HOH B 38 2038 2038 HOH HOH . Q 5 HOH B 39 2039 2039 HOH HOH . Q 5 HOH B 40 2040 2040 HOH HOH . Q 5 HOH B 41 2041 2041 HOH HOH . Q 5 HOH B 42 2042 2042 HOH HOH . Q 5 HOH B 43 2043 2043 HOH HOH . Q 5 HOH B 44 2044 2044 HOH HOH . Q 5 HOH B 45 2045 2045 HOH HOH . Q 5 HOH B 46 2046 2046 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K1T . . . O 4 43.276 63.239 -13.947 1 27.71 ? C1 K1T 1216 B 1 HETATM 2 C C2 K1T . . . O 4 43.703 63.98 -15.198 1 27.98 ? C2 K1T 1216 B 1 HETATM 3 C C3 K1T . . . O 4 42.622 63.881 -16.265 1 30.86 ? C3 K1T 1216 B 1 HETATM 4 C C4 K1T . . . O 4 43.978 65.449 -14.915 1 27.65 ? C4 K1T 1216 B 1 HETATM 5 C C5 K1T . . . O 4 44.976 65.72 -13.8 1 27.69 ? C5 K1T 1216 B 1 HETATM 6 C C7 K1T . . . O 4 46.335 65.159 -14.169 1 25.74 ? C7 K1T 1216 B 1 HETATM 7 C C8 K1T . . . O 4 47.393 65.254 -13.101 1 24.31 ? C8 K1T 1216 B 1 HETATM 8 C C9 K1T . . . O 4 48.677 65.738 -13.34 1 25.29 ? C9 K1T 1216 B 1 HETATM 9 C C10 K1T . . . O 4 49.549 65.741 -12.272 1 25.46 ? C10 K1T 1216 B 1 HETATM 10 C C11 K1T . . . O 4 49.2 65.292 -11.037 1 25.82 ? C11 K1T 1216 B 1 HETATM 11 C C12 K1T . . . O 4 47.944 64.81 -10.783 1 25.65 ? C12 K1T 1216 B 1 HETATM 12 C C13 K1T . . . O 4 47.054 64.796 -11.834 1 25.23 ? C13 K1T 1216 B 1 HETATM 13 O O14 K1T . . . O 4 50.22 65.371 -10.139 1 27.36 ? O14 K1T 1216 B 1 HETATM 14 C C15 K1T . . . O 4 51.294 65.571 -11.059 1 29.21 ? C15 K1T 1216 B 1 HETATM 15 O O16 K1T . . . O 4 50.852 66.161 -12.288 1 27.92 ? O16 K1T 1216 B 1 HETATM 16 C C17 K1T . . . O 4 49.163 66.25 -14.654 1 24.98 ? C17 K1T 1216 B 1 HETATM 17 O O18 K1T . . . O 4 50.264 65.803 -15.096 1 24.07 ? O18 K1T 1216 B 1 HETATM 18 O O19 K1T . . . O 4 48.45 67.116 -15.234 1 25.36 ? O19 K1T 1216 B 1 HETATM 19 C C20 K1T . . . O 4 45.087 67.215 -13.612 1 31.85 ? C20 K1T 1216 B 1 HETATM 20 N N21 K1T . . . O 4 45.684 67.858 -14.758 1 31.97 ? N21 K1T 1216 B 1 HETATM 21 C C22 K1T . . . O 4 44.964 68.78 -15.486 1 37.83 ? C22 K1T 1216 B 1 HETATM 22 O O23 K1T . . . O 4 43.783 69.046 -15.323 1 36.3 ? O23 K1T 1216 B 1 HETATM 23 C C24 K1T . . . O 4 45.784 69.463 -16.539 1 40.7 ? C24 K1T 1216 B 1 HETATM 24 C C25 K1T . . . O 4 45.5 68.819 -17.877 1 42.49 ? C25 K1T 1216 B 1 HETATM 25 C C26 K1T . . . O 4 45.539 69.853 -18.985 1 46.63 ? C26 K1T 1216 B 1 HETATM 26 N N27 K1T . . . O 4 46.733 69.664 -19.844 1 47.72 ? N27 K1T 1216 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #