data_4CK8 # _model_server_result.job_id 17N3xiPC-vqR0AgVTk0M4Q _model_server_result.datetime_utc '2024-12-11 09:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ck8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1480}' # _entry.id 4CK8 # _exptl.entry_id 4CK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CK8 _cell.length_a 59.9 _cell.length_b 137.18 _cell.length_c 152.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 395 A CYS 422 1_555 C FE HEM . A HEM 1480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 C FE HEM . A HEM 1480 1_555 D NAX LFD . A LFD 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 B SG CYS 395 B CYS 422 1_555 E FE HEM . B HEM 1480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc4 E FE HEM . B HEM 1480 1_555 F NAX LFD . B LFD 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4CK8 _atom_sites.fract_transf_matrix[1][1] 0.016694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 1480 1480 HEM HEM . D 3 LFD A 1 1490 1490 LFD LFD . E 2 HEM B 1 1480 1480 HEM HEM . F 3 LFD B 1 1490 1490 LFD LFD . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 80.631 23.222 27.644 1 27.05 ? CHA HEM 1480 A 1 HETATM 2 C CHB HEM . . . C 2 81.11 27.362 25.188 1 28.84 ? CHB HEM 1480 A 1 HETATM 3 C CHC HEM . . . C 2 85.873 26.677 25.248 1 29.53 ? CHC HEM 1480 A 1 HETATM 4 C CHD HEM . . . C 2 85.079 22.061 26.138 1 32.08 ? CHD HEM 1480 A 1 HETATM 5 C C1A HEM . . . C 2 80.354 24.43 27.042 1 28.85 ? C1A HEM 1480 A 1 HETATM 6 C C2A HEM . . . C 2 79.11 25.058 26.917 1 27.69 ? C2A HEM 1480 A 1 HETATM 7 C C3A HEM . . . C 2 79.249 26.211 26.229 1 29.1 ? C3A HEM 1480 A 1 HETATM 8 C C4A HEM . . . C 2 80.593 26.324 25.907 1 27.54 ? C4A HEM 1480 A 1 HETATM 9 C CMA HEM . . . C 2 78.206 27.227 25.866 1 26.59 ? CMA HEM 1480 A 1 HETATM 10 C CAA HEM . . . C 2 77.828 24.549 27.46 1 25.57 ? CAA HEM 1480 A 1 HETATM 11 C CBA HEM . . . C 2 77.091 23.89 26.306 1 31.69 ? CBA HEM 1480 A 1 HETATM 12 C CGA HEM . . . C 2 76.337 22.753 26.922 1 38.64 ? CGA HEM 1480 A 1 HETATM 13 O O1A HEM . . . C 2 75.435 22.988 27.739 1 30.92 ? O1A HEM 1480 A 1 HETATM 14 O O2A HEM . . . C 2 76.631 21.579 26.646 1 37.13 ? O2A HEM 1480 A 1 HETATM 15 C C1B HEM . . . C 2 82.475 27.484 25.023 1 27.68 ? C1B HEM 1480 A 1 HETATM 16 C C2B HEM . . . C 2 83.043 28.638 24.472 1 25.64 ? C2B HEM 1480 A 1 HETATM 17 C C3B HEM . . . C 2 84.374 28.447 24.496 1 26.69 ? C3B HEM 1480 A 1 HETATM 18 C C4B HEM . . . C 2 84.595 27.151 25.107 1 28.07 ? C4B HEM 1480 A 1 HETATM 19 C CMB HEM . . . C 2 82.313 29.84 23.963 1 22.23 ? CMB HEM 1480 A 1 HETATM 20 C CAB HEM . . . C 2 85.45 29.312 24.044 1 27 ? CAB HEM 1480 A 1 HETATM 21 C CBB HEM . . . C 2 85.108 30.521 23.651 1 30.52 ? CBB HEM 1480 A 1 HETATM 22 C C1C HEM . . . C 2 86.09 25.352 25.444 1 31.23 ? C1C HEM 1480 A 1 HETATM 23 C C2C HEM . . . C 2 87.319 24.723 25.357 1 31.86 ? C2C HEM 1480 A 1 HETATM 24 C C3C HEM . . . C 2 87.081 23.385 25.603 1 31.48 ? C3C HEM 1480 A 1 HETATM 25 C C4C HEM . . . C 2 85.703 23.232 25.838 1 34.42 ? C4C HEM 1480 A 1 HETATM 26 C CMC HEM . . . C 2 88.603 25.447 25.067 1 27.95 ? CMC HEM 1480 A 1 HETATM 27 C CAC HEM . . . C 2 88.036 22.281 25.709 1 32.3 ? CAC HEM 1480 A 1 HETATM 28 C CBC HEM . . . C 2 89.244 22.491 26.202 1 36.49 ? CBC HEM 1480 A 1 HETATM 29 C C1D HEM . . . C 2 83.794 22.078 26.646 1 27.36 ? C1D HEM 1480 A 1 HETATM 30 C C2D HEM . . . C 2 83.24 20.855 27.181 1 33.22 ? C2D HEM 1480 A 1 HETATM 31 C C3D HEM . . . C 2 82.009 21.142 27.613 1 32.53 ? C3D HEM 1480 A 1 HETATM 32 C C4D HEM . . . C 2 81.821 22.57 27.352 1 27.89 ? C4D HEM 1480 A 1 HETATM 33 C CMD HEM . . . C 2 83.941 19.531 27.217 1 29.53 ? CMD HEM 1480 A 1 HETATM 34 C CAD HEM . . . C 2 81.048 20.162 28.228 1 27.6 ? CAD HEM 1480 A 1 HETATM 35 C CBD HEM . . . C 2 80.54 20.73 29.547 1 30.12 ? CBD HEM 1480 A 1 HETATM 36 C CGD HEM . . . C 2 80.044 19.661 30.478 1 40.41 ? CGD HEM 1480 A 1 HETATM 37 O O1D HEM . . . C 2 80.709 19.384 31.492 1 41.25 ? O1D HEM 1480 A 1 HETATM 38 O O2D HEM . . . C 2 78.97 19.068 30.265 1 38.95 ? O2D HEM 1480 A 1 HETATM 39 N NA HEM . . . C 2 81.248 25.24 26.406 1 24.79 ? NA HEM 1480 A 1 HETATM 40 N NB HEM . . . C 2 83.422 26.661 25.414 1 23.27 ? NB HEM 1480 A 1 HETATM 41 N NC HEM . . . C 2 85.133 24.461 25.766 1 27.67 ? NC HEM 1480 A 1 HETATM 42 N ND HEM . . . C 2 82.925 23.066 26.797 1 29.77 ? ND HEM 1480 A 1 HETATM 43 FE FE HEM . . . C 2 83.142 24.792 26.215 1 31.57 ? FE HEM 1480 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 43 #