data_4CK8
#
_model_server_result.job_id            4luHv3Qz5B8uXuVUwDBYiA 
_model_server_result.datetime_utc      '2024-12-11 09:20:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ck8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1490}' 
#
_entry.id    4CK8 
#
_exptl.entry_id    4CK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              605.342 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl {4-[4-(3,4-dichlorophenyl)piperazin-1-yl]phenyl}carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CK8 
_cell.length_a            59.9 
_cell.length_b            137.18 
_cell.length_c            152.43 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 395 A CYS 422 1_555 C FE HEM . A HEM 1480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc2 C FE HEM . A HEM 1480 1_555 D NAX LFD . A LFD 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc3 B SG CYS 395 B CYS 422 1_555 E FE HEM . B HEM 1480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc4 E FE HEM . B HEM 1480 1_555 F NAX LFD . B LFD 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C28 H25 Cl4 N5 O2' 
_chem_comp.formula_weight    605.342 
_chem_comp.id                LFD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethyl {4-[4-(3,4-dichlorophenyl)piperazin-1-yl]phenyl}carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CBA LFD doub 276 n n 
CLB CBB LFD sing 277 n n 
CLC CBD LFD sing 278 n n 
CLD CBE LFD sing 279 n n 
CLE CBF LFD sing 280 n n 
CAF CAO LFD doub 281 n y 
CAF NAX LFD sing 282 n y 
CAG CAN LFD doub 283 n y 
CAG CBB LFD sing 284 n y 
CAH CAK LFD doub 285 n y 
CAH CBC LFD sing 286 n y 
CAI CAL LFD sing 287 n y 
CAI CBC LFD doub 288 n y 
CAJ CAM LFD doub 289 n y 
CAJ CBD LFD sing 290 n y 
CAK CBG LFD sing 291 n y 
CAL CBG LFD doub 292 n y 
CAM CBH LFD sing 293 n y 
CAN CBI LFD sing 294 n y 
CAO NBM LFD sing 295 n y 
CAP NAX LFD doub 296 n y 
CAP NBM LFD sing 297 n y 
CAQ CBB LFD doub 298 n y 
CAQ CBF LFD sing 299 n y 
CAR CBE LFD sing 300 n y 
CAR CBH LFD doub 301 n y 
CAS CAU LFD sing 302 n n 
CAS NBK LFD sing 303 n n 
CAT CAV LFD sing 304 n n 
CAT NBK LFD sing 305 n n 
CAU NBL LFD sing 306 n n 
CAV NBL LFD sing 307 n n 
CAW CBJ LFD sing 308 n n 
CAW NBM LFD sing 309 n n 
NAY CBA LFD sing 310 n n 
NAY CBC LFD sing 311 n n 
OAZ CBA LFD sing 312 n n 
OAZ CBJ LFD sing 313 n n 
CBD CBE LFD doub 314 n y 
CBF CBI LFD doub 315 n y 
CBG NBK LFD sing 316 n n 
CBH NBL LFD sing 317 n n 
CBI CBJ LFD sing 318 n n 
CAF HAF LFD sing 319 n n 
CAG HAG LFD sing 320 n n 
CAH HAH LFD sing 321 n n 
CAI HAI LFD sing 322 n n 
CAJ HAJ LFD sing 323 n n 
CAK HAK LFD sing 324 n n 
CAL HAL LFD sing 325 n n 
CAM HAM LFD sing 326 n n 
CAN HAN LFD sing 327 n n 
CAO HAO LFD sing 328 n n 
CAP HAP LFD sing 329 n n 
CAQ HAQ LFD sing 330 n n 
CAR HAR LFD sing 331 n n 
CAS HAS LFD sing 332 n n 
CAS HASA LFD sing 333 n n 
CAT HAT LFD sing 334 n n 
CAT HATA LFD sing 335 n n 
CAU HAU LFD sing 336 n n 
CAU HAUA LFD sing 337 n n 
CAV HAV LFD sing 338 n n 
CAV HAVA LFD sing 339 n n 
CAW HAW LFD sing 340 n n 
CAW HAWA LFD sing 341 n n 
NAY HNAY LFD sing 342 n n 
CBJ HBJ LFD sing 343 n n 
#
_atom_sites.entry_id                     4CK8 
_atom_sites.fract_transf_matrix[1][1]    0.016694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00729 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 1480 1480 HEM HEM . 
D 3 LFD A 1 1490 1490 LFD LFD . 
E 2 HEM B 1 1480 1480 HEM HEM . 
F 3 LFD B 1 1490 1490 LFD LFD . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
G 4 HOH A 5 2005 2005 HOH HOH . 
G 4 HOH A 6 2006 2006 HOH HOH . 
G 4 HOH A 7 2007 2007 HOH HOH . 
G 4 HOH A 8 2008 2008 HOH HOH . 
G 4 HOH A 9 2009 2009 HOH HOH . 
G 4 HOH A 10 2010 2010 HOH HOH . 
G 4 HOH A 11 2011 2011 HOH HOH . 
G 4 HOH A 12 2012 2012 HOH HOH . 
G 4 HOH A 13 2013 2013 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
H 4 HOH B 4 2004 2004 HOH HOH . 
H 4 HOH B 5 2005 2005 HOH HOH . 
H 4 HOH B 6 2006 2006 HOH HOH . 
H 4 HOH B 7 2007 2007 HOH HOH . 
H 4 HOH B 8 2008 2008 HOH HOH . 
H 4 HOH B 9 2009 2009 HOH HOH . 
H 4 HOH B 10 2010 2010 HOH HOH . 
H 4 HOH B 11 2011 2011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA LFD . . . D 3 77.671 21.4 21.165 1 135.93 ? OAA LFD 1490 A 1 
HETATM 2 CL CLB LFD . . . D 3 82.271 17.003 25.416 1 61.89 ? CLB LFD 1490 A 1 
HETATM 3 CL CLC LFD . . . D 3 67.839 25.767 11.118 1 71.41 ? CLC LFD 1490 A 1 
HETATM 4 CL CLD LFD . . . D 3 68.26 22.867 11.258 1 88.14 ? CLD LFD 1490 A 1 
HETATM 5 CL CLE LFD . . . D 3 83.031 19.516 21.038 1 74.25 ? CLE LFD 1490 A 1 
HETATM 6 C CAF LFD . . . D 3 83.202 24.219 23.175 1 75.85 ? CAF LFD 1490 A 1 
HETATM 7 C CAG LFD . . . D 3 80.764 18.868 24.688 1 70.6 ? CAG LFD 1490 A 1 
HETATM 8 C CAH LFD . . . D 3 77.297 22.445 17.901 1 92.66 ? CAH LFD 1490 A 1 
HETATM 9 C CAI LFD . . . D 3 76.11 20.466 18.306 1 63.27 ? CAI LFD 1490 A 1 
HETATM 10 C CAJ LFD . . . D 3 69.967 25.842 12.722 1 87.93 ? CAJ LFD 1490 A 1 
HETATM 11 C CAK LFD . . . D 3 76.227 22.944 17.187 1 80.29 ? CAK LFD 1490 A 1 
HETATM 12 C CAL LFD . . . D 3 75.05 20.989 17.59 1 63.72 ? CAL LFD 1490 A 1 
HETATM 13 C CAM LFD . . . D 3 70.981 25.268 13.456 1 80.04 ? CAM LFD 1490 A 1 
HETATM 14 C CAN LFD . . . D 3 80.404 19.828 23.787 1 75.38 ? CAN LFD 1490 A 1 
HETATM 15 C CAO LFD . . . D 3 82.432 23.625 22.303 1 63.39 ? CAO LFD 1490 A 1 
HETATM 16 C CAP LFD . . . D 3 81.601 23.356 24.198 1 70.14 ? CAP LFD 1490 A 1 
HETATM 17 C CAQ LFD . . . D 3 82.557 18.325 23.253 1 68.78 ? CAQ LFD 1490 A 1 
HETATM 18 C CAR LFD . . . D 3 70.268 23.128 12.79 1 63.06 ? CAR LFD 1490 A 1 
HETATM 19 C CAS LFD . . . D 3 72.784 21.969 16.163 1 75.61 ? CAS LFD 1490 A 1 
HETATM 20 C CAT LFD . . . D 3 74.069 24.061 15.699 1 71.99 ? CAT LFD 1490 A 1 
HETATM 21 C CAU LFD . . . D 3 72.155 22.048 14.785 1 76.69 ? CAU LFD 1490 A 1 
HETATM 22 C CAV LFD . . . D 3 73.444 24.127 14.327 1 75.27 ? CAV LFD 1490 A 1 
HETATM 23 C CAW LFD . . . D 3 80.35 22.332 22.429 1 63.69 ? CAW LFD 1490 A 1 
HETATM 24 N NAX LFD . . . D 3 82.678 24.094 24.377 1 82.62 ? NAX LFD 1490 A 1 
HETATM 25 N NAY LFD . . . D 3 78.331 20.736 19.161 1 101.47 ? NAY LFD 1490 A 1 
HETATM 26 O OAZ LFD . . . D 3 79.622 20.353 21.05 1 73.39 ? OAZ LFD 1490 A 1 
HETATM 27 C CBA LFD . . . D 3 78.526 20.883 20.469 1 96.74 ? CBA LFD 1490 A 1 
HETATM 28 C CBB LFD . . . D 3 81.853 18.107 24.412 1 73.49 ? CBB LFD 1490 A 1 
HETATM 29 C CBC LFD . . . D 3 77.258 21.208 18.5 1 89.95 ? CBC LFD 1490 A 1 
HETATM 30 C CBD LFD . . . D 3 69.088 25.069 12.01 1 89.57 ? CBD LFD 1490 A 1 
HETATM 31 C CBE LFD . . . D 3 69.256 23.714 12.059 1 74.54 ? CBE LFD 1490 A 1 
HETATM 32 C CBF LFD . . . D 3 82.199 19.294 22.35 1 74.98 ? CBF LFD 1490 A 1 
HETATM 33 C CBG LFD . . . D 3 75.073 22.229 17.005 1 65.03 ? CBG LFD 1490 A 1 
HETATM 34 C CBH LFD . . . D 3 71.152 23.909 13.511 1 75.11 ? CBH LFD 1490 A 1 
HETATM 35 C CBI LFD . . . D 3 81.11 20.071 22.63 1 83.32 ? CBI LFD 1490 A 1 
HETATM 36 C CBJ LFD . . . D 3 80.684 21.033 21.739 1 82.76 ? CBJ LFD 1490 A 1 
HETATM 37 N NBK LFD . . . D 3 74.034 22.717 16.296 1 72.64 ? NBK LFD 1490 A 1 
HETATM 38 N NBL LFD . . . D 3 72.182 23.394 14.224 1 85.6 ? NBL LFD 1490 A 1 
HETATM 39 N NBM LFD . . . D 3 81.459 23.068 22.943 1 60.73 ? NBM LFD 1490 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#