data_4CKB # _model_server_result.job_id GWthtCu7BgNYSDpOQGLYsQ _model_server_result.datetime_utc '2024-11-05 00:36:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ckb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1845}' # _entry.id 4CKB # _exptl.entry_id 4CKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.13 _cell.angle_beta 109.27 _cell.angle_gamma 94.05 _cell.entry_id 4CKB _cell.length_a 60.34 _cell.length_b 197.73 _cell.length_c 61.11 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,F,G,J,K 1 1 A,B,E,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 327 n n N HN1 SAH sing 328 n n N HN2 SAH sing 329 n n CA CB SAH sing 330 n n CA C SAH sing 331 n n CA HA SAH sing 332 n n CB CG SAH sing 333 n n CB HB1 SAH sing 334 n n CB HB2 SAH sing 335 n n CG SD SAH sing 336 n n CG HG1 SAH sing 337 n n CG HG2 SAH sing 338 n n SD C5' SAH sing 339 n n C O SAH doub 340 n n C OXT SAH sing 341 n n OXT HXT SAH sing 342 n n C5' C4' SAH sing 343 n n C5' "H5'1" SAH sing 344 n n C5' "H5'2" SAH sing 345 n n C4' O4' SAH sing 346 n n C4' C3' SAH sing 347 n n C4' H4' SAH sing 348 n n O4' C1' SAH sing 349 n n C3' O3' SAH sing 350 n n C3' C2' SAH sing 351 n n C3' H3' SAH sing 352 n n O3' HO3' SAH sing 353 n n C2' O2' SAH sing 354 n n C2' C1' SAH sing 355 n n C2' H2' SAH sing 356 n n O2' HO2' SAH sing 357 n n C1' N9 SAH sing 358 n n C1' H1' SAH sing 359 n n N9 C8 SAH sing 360 n y N9 C4 SAH sing 361 n y C8 N7 SAH doub 362 n y C8 H8 SAH sing 363 n n N7 C5 SAH sing 364 n y C5 C6 SAH sing 365 n y C5 C4 SAH doub 366 n y C6 N6 SAH sing 367 n n C6 N1 SAH doub 368 n y N6 HN61 SAH sing 369 n n N6 HN62 SAH sing 370 n n N1 C2 SAH sing 371 n y C2 N3 SAH doub 372 n y C2 H2 SAH sing 373 n n N3 C4 SAH sing 374 n y # _atom_sites.entry_id 4CKB _atom_sites.fract_transf_matrix[1][1] 0.016573 _atom_sites.fract_transf_matrix[1][2] 0.001173 _atom_sites.fract_transf_matrix[1][3] 0.005828 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00507 _atom_sites.fract_transf_matrix[2][3] 0.000138 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SAH A 1 1845 1845 SAH SAH . F 3 SAH D 1 1845 1845 SAH SAH . G 4 GTP D 1 1846 1846 GTP GTP . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH D 1 2001 2001 HOH HOH . J 5 HOH D 2 2002 2002 HOH HOH . J 5 HOH D 3 2003 2003 HOH HOH . J 5 HOH D 4 2004 2004 HOH HOH . J 5 HOH D 5 2005 2005 HOH HOH . J 5 HOH D 6 2006 2006 HOH HOH . J 5 HOH D 7 2007 2007 HOH HOH . J 5 HOH D 8 2008 2008 HOH HOH . J 5 HOH D 9 2009 2009 HOH HOH . J 5 HOH D 10 2010 2010 HOH HOH . K 5 HOH E 1 2001 2001 HOH HOH . K 5 HOH E 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 3 0.911 17.631 6.827 1 50.2 ? N SAH 1845 A 1 HETATM 2 C CA SAH . . . E 3 2.322 17.826 7.325 1 50.99 ? CA SAH 1845 A 1 HETATM 3 C CB SAH . . . E 3 2.92 19.182 6.95 1 50.64 ? CB SAH 1845 A 1 HETATM 4 C CG SAH . . . E 3 2.258 20.389 7.618 1 50.04 ? CG SAH 1845 A 1 HETATM 5 S SD SAH . . . E 3 3.354 21.777 7.466 1 50.42 ? SD SAH 1845 A 1 HETATM 6 C C SAH . . . E 3 2.426 17.708 8.814 1 51.95 ? C SAH 1845 A 1 HETATM 7 O O SAH . . . E 3 1.419 17.675 9.527 1 52.92 ? O SAH 1845 A 1 HETATM 8 O OXT SAH . . . E 3 3.537 17.662 9.345 1 52.43 ? OXT SAH 1845 A 1 HETATM 9 C C5' SAH . . . E 3 2.445 22.875 6.427 1 49.67 ? C5' SAH 1845 A 1 HETATM 10 C C4' SAH . . . E 3 2.595 22.453 4.971 1 49.56 ? C4' SAH 1845 A 1 HETATM 11 O O4' SAH . . . E 3 1.696 23.221 4.173 1 49.44 ? O4' SAH 1845 A 1 HETATM 12 C C3' SAH . . . E 3 3.997 22.686 4.406 1 50.18 ? C3' SAH 1845 A 1 HETATM 13 O O3' SAH . . . E 3 4.57 21.482 3.91 1 49.63 ? O3' SAH 1845 A 1 HETATM 14 C C2' SAH . . . E 3 3.809 23.64 3.259 1 50.63 ? C2' SAH 1845 A 1 HETATM 15 O O2' SAH . . . E 3 4.631 23.318 2.141 1 51.44 ? O2' SAH 1845 A 1 HETATM 16 C C1' SAH . . . E 3 2.337 23.468 2.924 1 50.24 ? C1' SAH 1845 A 1 HETATM 17 N N9 SAH . . . E 3 1.774 24.655 2.246 1 51.17 ? N9 SAH 1845 A 1 HETATM 18 C C8 SAH . . . E 3 0.981 24.612 1.156 1 51.49 ? C8 SAH 1845 A 1 HETATM 19 N N7 SAH . . . E 3 0.626 25.865 0.779 1 52.11 ? N7 SAH 1845 A 1 HETATM 20 C C5 SAH . . . E 3 1.2 26.719 1.637 1 52.15 ? C5 SAH 1845 A 1 HETATM 21 C C6 SAH . . . E 3 1.247 28.179 1.796 1 53.07 ? C6 SAH 1845 A 1 HETATM 22 N N6 SAH . . . E 3 0.571 28.969 0.929 1 53.95 ? N6 SAH 1845 A 1 HETATM 23 N N1 SAH . . . E 3 1.973 28.686 2.815 1 52.94 ? N1 SAH 1845 A 1 HETATM 24 C C2 SAH . . . E 3 2.641 27.901 3.674 1 52.71 ? C2 SAH 1845 A 1 HETATM 25 N N3 SAH . . . E 3 2.642 26.562 3.585 1 52.07 ? N3 SAH 1845 A 1 HETATM 26 C C4 SAH . . . E 3 1.959 25.926 2.604 1 51.78 ? C4 SAH 1845 A 1 # _model_server_stats.io_time_ms 120 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #