data_4CKB
#
_model_server_result.job_id            3WY6QQYju8V04Hij7UUu4A 
_model_server_result.datetime_utc      '2024-11-29 14:28:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ckb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1846}' 
#
_entry.id    4CKB 
#
_exptl.entry_id    4CKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.13 
_cell.angle_beta          109.27 
_cell.angle_gamma         94.05 
_cell.entry_id            4CKB 
_cell.length_a            60.34 
_cell.length_b            197.73 
_cell.length_c            61.11 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,D,F,G,J,K 1 1 
A,B,E,H,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     4CKB 
_atom_sites.fract_transf_matrix[1][1]    0.016573 
_atom_sites.fract_transf_matrix[1][2]    0.001173 
_atom_sites.fract_transf_matrix[1][3]    0.005828 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00507 
_atom_sites.fract_transf_matrix[2][3]    0.000138 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SAH A 1 1845 1845 SAH SAH . 
F 3 SAH D 1 1845 1845 SAH SAH . 
G 4 GTP D 1 1846 1846 GTP GTP . 
H 5 HOH A 1 2001 2001 HOH HOH . 
H 5 HOH A 2 2002 2002 HOH HOH . 
H 5 HOH A 3 2003 2003 HOH HOH . 
H 5 HOH A 4 2004 2004 HOH HOH . 
H 5 HOH A 5 2005 2005 HOH HOH . 
H 5 HOH A 6 2006 2006 HOH HOH . 
H 5 HOH A 7 2007 2007 HOH HOH . 
H 5 HOH A 8 2008 2008 HOH HOH . 
H 5 HOH A 9 2009 2009 HOH HOH . 
I 5 HOH B 1 2001 2001 HOH HOH . 
I 5 HOH B 2 2002 2002 HOH HOH . 
I 5 HOH B 3 2003 2003 HOH HOH . 
I 5 HOH B 4 2004 2004 HOH HOH . 
J 5 HOH D 1 2001 2001 HOH HOH . 
J 5 HOH D 2 2002 2002 HOH HOH . 
J 5 HOH D 3 2003 2003 HOH HOH . 
J 5 HOH D 4 2004 2004 HOH HOH . 
J 5 HOH D 5 2005 2005 HOH HOH . 
J 5 HOH D 6 2006 2006 HOH HOH . 
J 5 HOH D 7 2007 2007 HOH HOH . 
J 5 HOH D 8 2008 2008 HOH HOH . 
J 5 HOH D 9 2009 2009 HOH HOH . 
J 5 HOH D 10 2010 2010 HOH HOH . 
K 5 HOH E 1 2001 2001 HOH HOH . 
K 5 HOH E 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . G 4 -39.633 -49.463 22.639 1 133.35 ? PG GTP 1846 D 1 
HETATM 2 O O1G GTP . . . G 4 -38.622 -49.343 21.517 1 133.38 ? O1G GTP 1846 D 1 
HETATM 3 O O2G GTP . . . G 4 -40.701 -48.4 22.64 1 129.67 ? O2G GTP 1846 D 1 
HETATM 4 O O3G GTP . . . G 4 -40.19 -50.851 22.86 1 138.94 ? O3G GTP 1846 D 1 
HETATM 5 O O3B GTP . . . G 4 -38.753 -49.139 23.953 1 129.21 ? O3B GTP 1846 D 1 
HETATM 6 P PB GTP . . . G 4 -39.274 -49.439 25.45 1 124.29 ? PB GTP 1846 D 1 
HETATM 7 O O1B GTP . . . G 4 -38.743 -48.332 26.337 1 122.19 ? O1B GTP 1846 D 1 
HETATM 8 O O2B GTP . . . G 4 -40.774 -49.624 25.41 1 123.6 ? O2B GTP 1846 D 1 
HETATM 9 O O3A GTP . . . G 4 -38.572 -50.842 25.922 1 126.13 ? O3A GTP 1846 D 1 
HETATM 10 P PA GTP . . . G 4 -37.846 -52.046 25.076 1 123.92 ? PA GTP 1846 D 1 
HETATM 11 O O1A GTP . . . G 4 -38.618 -53.337 25.302 1 126.02 ? O1A GTP 1846 D 1 
HETATM 12 O O2A GTP . . . G 4 -37.522 -51.619 23.662 1 119.5 ? O2A GTP 1846 D 1 
HETATM 13 O O5' GTP . . . G 4 -36.436 -52.232 25.851 1 118.75 ? O5' GTP 1846 D 1 
HETATM 14 C C5' GTP . . . G 4 -35.157 -51.989 25.243 1 112.08 ? C5' GTP 1846 D 1 
HETATM 15 C C4' GTP . . . G 4 -34.78 -50.53 25.428 1 104.63 ? C4' GTP 1846 D 1 
HETATM 16 O O4' GTP . . . G 4 -34.709 -50.247 26.828 1 101.33 ? O4' GTP 1846 D 1 
HETATM 17 C C3' GTP . . . G 4 -33.424 -50.166 24.86 1 100.8 ? C3' GTP 1846 D 1 
HETATM 18 O O3' GTP . . . G 4 -33.514 -49.829 23.472 1 97.21 ? O3' GTP 1846 D 1 
HETATM 19 C C2' GTP . . . G 4 -33.011 -49.015 25.762 1 99.81 ? C2' GTP 1846 D 1 
HETATM 20 O O2' GTP . . . G 4 -33.463 -47.76 25.258 1 99.84 ? O2' GTP 1846 D 1 
HETATM 21 C C1' GTP . . . G 4 -33.709 -49.27 27.093 1 97.91 ? C1' GTP 1846 D 1 
HETATM 22 N N9 GTP . . . G 4 -32.739 -49.754 28.105 1 94.27 ? N9 GTP 1846 D 1 
HETATM 23 C C8 GTP . . . G 4 -32.27 -49.004 29.116 1 91.63 ? C8 GTP 1846 D 1 
HETATM 24 N N7 GTP . . . G 4 -31.382 -49.705 29.859 1 92.1 ? N7 GTP 1846 D 1 
HETATM 25 C C5 GTP . . . G 4 -31.269 -50.936 29.32 1 90.58 ? C5 GTP 1846 D 1 
HETATM 26 C C6 GTP . . . G 4 -30.503 -52.181 29.621 1 90.47 ? C6 GTP 1846 D 1 
HETATM 27 O O6 GTP . . . G 4 -29.724 -52.251 30.598 1 91.31 ? O6 GTP 1846 D 1 
HETATM 28 N N1 GTP . . . G 4 -30.685 -53.248 28.821 1 90.83 ? N1 GTP 1846 D 1 
HETATM 29 C C2 GTP . . . G 4 -31.528 -53.219 27.765 1 89.78 ? C2 GTP 1846 D 1 
HETATM 30 N N2 GTP . . . G 4 -31.647 -54.337 27.008 1 89.54 ? N2 GTP 1846 D 1 
HETATM 31 N N3 GTP . . . G 4 -32.259 -52.115 27.435 1 89.32 ? N3 GTP 1846 D 1 
HETATM 32 C C4 GTP . . . G 4 -32.173 -50.967 28.158 1 90.75 ? C4 GTP 1846 D 1 
#
_model_server_stats.io_time_ms              108 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           654 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#